المؤلفون: Pompei S; IFOM ETS - The AIRC Institute of Molecular Oncology, Milan, Italy., Bella E; Dipartimento di Fisica, Università degli Studi di Milano, via Celoria 16 Milano, Italy., Weitz JS; Department of Biology, University of Maryland, College Park, Maryland, United States of America.; Department of Physics, University of Maryland, College Park, Maryland, United States of America.; Institut de Biologie, École Normale Supérieure, Paris, France., Grilli J; Quantitative Life Sciences, The Abdus Salam International Centre for Theoretical Physics (ICTP), Trieste, Italy., Lagomarsino MC; IFOM ETS - The AIRC Institute of Molecular Oncology, Milan, Italy.; Dipartimento di Fisica, Università degli Studi di Milano, via Celoria 16 Milano, Italy.; I.N.F.N, via Celoria 16 Milano, Italy.

المصدر: PLoS computational biology [PLoS Comput Biol] 2023 Oct 04; Vol. 19 (10), pp. e1011532. Date of Electronic Publication: 2023 Oct 04 (Print Publication: 2023).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal*/genetics , Bacteria*/genetics, Humans ; Biological Evolution ; Genome

المؤلفون: Koutsovoulos GD; Institut Sophia Agrobiotech, Université Côte d'Azur, INRAE, CNRS, Sophia Antipolis, France., Granjeon Noriot S; Institut Sophia Agrobiotech, Université Côte d'Azur, INRAE, CNRS, Sophia Antipolis, France., Bailly-Bechet M; Institut Sophia Agrobiotech, Université Côte d'Azur, INRAE, CNRS, Sophia Antipolis, France., Danchin EGJ; Institut Sophia Agrobiotech, Université Côte d'Azur, INRAE, CNRS, Sophia Antipolis, France., Rancurel C; Institut Sophia Agrobiotech, Université Côte d'Azur, INRAE, CNRS, Sophia Antipolis, France.

المصدر: PLoS computational biology [PLoS Comput Biol] 2022 Nov 09; Vol. 18 (11), pp. e1010686. Date of Electronic Publication: 2022 Nov 09 (Print Publication: 2022).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal*/genetics , Biological Evolution*, Phylogeny ; Genome ; Software ; Evolution, Molecular

المؤلفون: Seiler E; Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany.; Efficient Algorithms for Omics Data, Max Planck Institute for Molecular Genetics, and Algorithmic Bioinformatics, Institute for Bioinformatics, Freie Universität Berlin, Berlin, Germany., Trappe K; Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany., Renard BY; Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany.

المصدر: PLoS computational biology [PLoS Comput Biol] 2019 Jul 23; Vol. 15 (7), pp. e1007208. Date of Electronic Publication: 2019 Jul 23 (Print Publication: 2019).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Validation Study

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Gene Transfer, Horizontal* , Metagenome* , Models, Genetic*, Metagenomics/*methods, Computational Biology ; Computer Simulation ; Databases, Genetic/statistics & numerical data ; Disease Outbreaks/statistics & numerical data ; Genetic Variation ; Genome, Bacterial ; Helicobacter pylori/genetics ; Humans ; Metagenomics/statistics & numerical data ; Methicillin-Resistant Staphylococcus aureus/genetics ; Mutation ; Staphylococcal Infections/epidemiology ; Staphylococcal Infections/microbiology

المؤلفون: Yin Y; Department of Computer Science, Rice University, Houston, Texas, United States of America., Ogilvie HA; Department of Computer Science, Rice University, Houston, Texas, United States of America., Nakhleh L; Department of Computer Science, Rice University, Houston, Texas, United States of America.; Department of BioSciences, Rice University, Houston, Texas, United States of America.

المصدر: PLoS computational biology [PLoS Comput Biol] 2022 Jun 08; Vol. 18 (6), pp. e1010216. Date of Electronic Publication: 2022 Jun 08 (Print Publication: 2022).

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Genome, Bacterial*/genetics , Prokaryotic Cells*, Gene Transfer, Horizontal ; Phylogeny ; Sequence Alignment

المؤلفون: Asplund-Samuelsson J; Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Solna, Sweden., Hudson EP; Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Solna, Sweden.

المصدر: PLoS computational biology [PLoS Comput Biol] 2021 Feb 08; Vol. 17 (2), pp. e1008742. Date of Electronic Publication: 2021 Feb 08 (Print Publication: 2021).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Genome, Bacterial*, Photosynthesis/*physiology, Carbon Cycle ; Carbon Dioxide/chemistry ; Escherichia coli/metabolism ; Gene Transfer, Horizontal ; Genetic Engineering/methods ; Genome, Archaeal ; Genome, Microbial ; Open Reading Frames ; Oxygen Consumption ; Photochemistry/methods ; Phylogeny ; Reproducibility of Results ; Ribulose-Bisphosphate Carboxylase/metabolism

المؤلفون: Ravenhall M; University College London, London, United Kingdom., Škunca N; ETH Zurich, Zurich, Switzerland; Swiss Institute of Bioinformatics, Zurich, Switzerland., Lassalle F; University College London, London, United Kingdom., Dessimoz C; University College London, London, United Kingdom; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

المصدر: PLoS computational biology [PLoS Comput Biol] 2015 May 28; Vol. 11 (5), pp. e1004095. Date of Electronic Publication: 2015 May 28 (Print Publication: 2015).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal*, Base Composition ; Computational Biology ; Computer Simulation ; DNA, Bacterial/genetics ; Databases, Genetic ; Drug Resistance, Bacterial/genetics ; Evolution, Molecular ; Genomics/statistics & numerical data ; Humans ; Models, Genetic ; Models, Statistical ; Phylogeny

المؤلفون: Riley DR; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Sieber KB, Robinson KM, White JR, Ganesan A, Nourbakhsh S, Dunning Hotopp JC

المصدر: PLoS computational biology [PLoS Comput Biol] 2013; Vol. 9 (6), pp. e1003107. Date of Electronic Publication: 2013 Jun 20.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal*, Bacteria/*isolation & purification , Neoplasms/*genetics, Bacteria/genetics ; Base Sequence ; DNA, Bacterial/genetics ; Genes, Bacterial ; Genome, Human ; Humans ; Molecular Sequence Data ; Neoplasms/metabolism ; Sequence Homology, Nucleic Acid

المؤلفون: Rappoport N; School of Computer Science and Engineering, Hebrew University of Jerusalem, Jerusalem, Israel., Linial M

المصدر: PLoS computational biology [PLoS Comput Biol] 2012 Feb; Vol. 8 (2), pp. e1002364. Date of Electronic Publication: 2012 Feb 02.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Host-Pathogen Interactions* , Models, Genetic*, Viral Proteins/*chemistry, Amino Acid Sequence ; Animals ; Cluster Analysis ; Conserved Sequence ; DNA, Viral/chemistry ; Humans ; Mammals/genetics ; Molecular Sequence Data ; Mutagenesis, Insertional ; Protein Structure, Tertiary ; RNA, Viral/chemistry ; Sequence Alignment ; Viral Proteins/genetics ; Viruses/chemistry ; Viruses/genetics

المؤلفون: Cámara PG; Department of Systems Biology and Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America., Levine AJ; The Simons Center for Systems Biology, Institute for Advanced Study, Princeton, New Jersey, United States of America., Rabadán R; Department of Systems Biology and Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.

المصدر: PLoS computational biology [PLoS Comput Biol] 2016 Aug 17; Vol. 12 (8), pp. e1005071. Date of Electronic Publication: 2016 Aug 17 (Print Publication: 2016).

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Software*, Computational Biology/*methods , Recombination, Genetic/*genetics, Animals ; Finches/genetics ; Gene Transfer, Horizontal ; Humans ; Models, Genetic ; Phylogeny

المؤلفون: Bromberg R; Department of Biophysics and Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas, United States of America., Grishin NV; Department of Biophysics and Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas, United States of America.; Howard Hughes Medical Institute, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas, United States of America., Otwinowski Z; Department of Biophysics and Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, Dallas, Texas, United States of America.

المصدر: PLoS computational biology [PLoS Comput Biol] 2016 Jun 23; Vol. 12 (6), pp. e1004985. Date of Electronic Publication: 2016 Jun 23 (Print Publication: 2016).

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Archaea/*genetics , Bacteria/*genetics , Computational Biology/*methods , Gene Transfer, Horizontal/*genetics , Genome, Archaeal/*genetics , Genome, Bacterial/*genetics, Algorithms ; Evolution, Molecular ; Phylogeny