نتائج البحث - "Gene Transfer, Horizontal."

1

A functional bacterial-derived restriction modification system in the mitochondrion of a heterotrophic protist

المؤلفون: Jeremy G. Wideman, David S. Milner, Cory D. Dunn, Thomas A. Richards, Courtney W. Stairs

المساهمون: Institute of Biotechnology

المصدر: PLoS Biology
PLoS Biology, Vol 19, Iss 4, p e3001126 (2021)

مصطلحات موضوعية: 0301 basic medicine, Artificial Gene Amplification and Extension, Yeast and Fungal Models, Biochemistry, Polymerase Chain Reaction, Genome, Endonuclease, 0302 clinical medicine, Biology (General), Energy-Producing Organelles, Phylogeny, Genetics, 0303 health sciences, Nucleotides, Organic Compounds, General Neuroscience, Eukaryota, Genomics, Mitochondrial DNA, Mitochondria, Enzymes, Nucleic acids, Chemistry, Experimental Organism Systems, Physical Sciences, Horizontal gene transfer, Saccharomyces Cerevisiae, Cellular Structures and Organelles, General Agricultural and Biological Sciences, Gene Transfer, Horizontal, QH301-705.5, Forms of DNA, Discovery Report, Bioenergetics, Biology, Research and Analysis Methods, DNA, Mitochondrial, General Biochemistry, Genetics and Molecular Biology, Evolution, Molecular, Cytosine, Saccharomyces, 03 medical and health sciences, Genetic Elements, Model Organisms, Escherichia coli, DNA Restriction-Modification Enzymes, Molecular Biology Techniques, Molecular Biology, Gene, Repetitive Sequences, Nucleic Acid, 030304 developmental biology, Bacteria, Base Sequence, Organisms, Genetically Modified, General Immunology and Microbiology, Organic Chemistry, Chemical Compounds, Organisms, Fungi, Intron, Biology and Life Sciences, Proteins, Cell Biology, DNA, Methyltransferases, Sequence Analysis, DNA, Yeast, Pyrimidines, 030104 developmental biology, Genome, Mitochondrial, Enzymology, Animal Studies, biology.protein, 1182 Biochemistry, cell and molecular biology, Restriction modification system, Heterologous expression, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6d27db48dd347d04d1289bbd8ac495d
https://doi.org/10.1101/2021.02.01.429123

2

Adaptive evolution of hybrid bacteria by horizontal gene transfer

المؤلفون: Melih Yüksel, Jeffrey J. Power, Isabel Rathmann, Michael Lässig, Viera Kovacova, Simone Pompei, Mona Förster, Fernanda Pinheiro, Berenike Maier

المصدر: Proc Natl Acad Sci U S A

مصطلحات موضوعية: Gene Transfer, Horizontal, Fitness landscape, Population, FOS: Physical sciences, Genomics, Biology, Genome, Evolution, Molecular, 03 medical and health sciences, Quantitative Biology - Genomics, Physics - Biological Physics, Quantitative Biology - Populations and Evolution, education, Gene, Selection (genetic algorithm), 030304 developmental biology, Genomics (q-bio.GN), 0303 health sciences, Experimental evolution, education.field_of_study, Multidisciplinary, 030306 microbiology, Populations and Evolution (q-bio.PE), Biological Sciences, Adaptation, Physiological, Biological Physics (physics.bio-ph), Evolutionary biology, FOS: Biological sciences, Horizontal gene transfer, Epistasis, Genome, Bacterial, Bacillus subtilis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ad41285ca3743291f688c5d0c0a9f0e
https://doi.org/10.1101/2020.04.23.057174

3

panRGP: a pangenome-based method to predict genomic islands and explore their diversity

المؤلفون: Bazin, Adelme, Gautreau, Guillaume, Médigue, Claudine, Vallenet, David, Calteau, Alexandra

المساهمون: Analyse Bio-Informatique pour la Génomique et le Métabolisme (LABGeM), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)-Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), CEA, Genoscope, Institut François Jacob, Université d'Évry, Université Paris-Saclay, CNRS (LABGeM, CNRS UMR8030 Génomique Métabolique)

المصدر: Bioinformatics
Bioinformatics, 2020, 36 (Supplément 2), pp.i651-i658. ⟨10.1093/bioinformatics/btaa792⟩
Bioinformatics, Oxford University Press (OUP), 2020, 36 (Supplément 2), pp.i651-i658. ⟨10.1093/bioinformatics/btaa792⟩

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f5ab3f334277a4b1531f350aa85d3039
https://doi.org/10.1101/2020.03.26.007484

4

Phylogenomics provides new insights into gains and losses of selenoproteins among Archaeplastida

المؤلفون: Xian Fu, Sunil Kumar Sahu, Michael Melkonian, Huan Liu, Hongping Liang, Sibo Wang, Hongli Wang, Linzhou Li, Gengyun Zhang, Haoyuan Li, Xin Liu, Tong Wei, Yan Xu

المصدر: International Journal of Molecular Sciences, Vol 20, Iss 12, p 3020 (2019)
Liang, H, Wei, T, Xu, Y, Li, L, Sahu, S K, Wang, H, Li, H, Fu, X, Zhang, G, Melkonian, M, Liu, X, Wang, S & Liu, H 2019, ' Phylogenomics Provides New Insights into Gains and Losses of Selenoproteins among Archaeplastida ', International Journal of Molecular Sciences (Online), vol. 20, no. 12, 3020 . https://doi.org/10.3390/ijms20123020
International Journal of Molecular Sciences
Volume 20
Issue 12

مصطلحات موضوعية: 0301 basic medicine, Gene Transfer, Horizontal, selenocysteine, Red algae, Genome, Article, Catalysis, Evolution, Molecular, Inorganic Chemistry, lcsh:Chemistry, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, Algae, Chlorophyta, Phylogenetics, Phylogenomics, evolution, Sec machinery, Physical and Theoretical Chemistry, Molecular Biology, lcsh:QH301-705.5, Phylogeny, Spectroscopy, Plant Proteins, integumentary system, biology, Selenocysteine, Archaeplastida, Streptophyta, Organic Chemistry, phylogenomics, Genomics, General Medicine, biology.organism_classification, Computer Science Applications, 030104 developmental biology, lcsh:Biology (General), lcsh:QD1-999, chemistry, Evolutionary biology, Rhodophyta, Horizontal gene transfer, selenoproteins, horizontal gene transfer, Adaptation, Transcriptome, 030217 neurology & neurosurgery

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b43d2199f29a509607a590b86ed969a2
https://doi.org/10.1101/674895

5

Functional genomics of a symbiotic community: shared traits in the olive fruit fly gut microbiota

المؤلفون: Ian Goodhead, John Vontas, Anastasia Kampouraki, Anastasia Gioti, Maria Kalyva, Frances Blow, Alistair C. Darby

المصدر: Genome Biology and Evolution

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0c58e416f7f35de0a9922cbf4a478b0
https://doi.org/10.1101/590489

6

Identifying Genomic Islands with Deep Neural Networks

المؤلفون: Rick Stevens, Rida Assaf, Fangfang Xia

المصدر: BMC Genomics
BMC Genomics, Vol 22, Iss S3, Pp 1-11 (2021)

مصطلحات موضوعية: Gene Transfer, Horizontal, Genomic Islands, Process (engineering), Computer science, media_common.quotation_subject, QH426-470, computer.software_genre, Field (computer science), Adaptability, Inception V3, 03 medical and health sciences, 0302 clinical medicine, Genomic island, Genetics, Gene, 030304 developmental biology, media_common, 0303 health sciences, Artificial neural network, biology, business.industry, Deep learning, Methodology, Eukaryota, Genomics, biology.organism_classification, Transfer learning, Horizontal gene transfer, Deep neural networks, Computer vision, Neural Networks, Computer, Artificial intelligence, Data mining, DNA microarray, business, Transfer of learning, computer, TP248.13-248.65, 030217 neurology & neurosurgery, Bacteria, Biotechnology, Archaea

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57a6f6caef9e0d82348d752cbdec046e
https://doi.org/10.1101/525030

7

Grafting or Pruning in the Animal Tree: Lateral Gene Transfer and Gene Loss?

المؤلفون: Dunning Hotopp, Julie C.

المصدر: BMC Genomics
BMC Genomics, Vol 19, Iss 1, Pp 1-9 (2018)

مصطلحات موضوعية: 0301 basic medicine, 0106 biological sciences, lcsh:QH426-470, Gene Transfer, Horizontal, Gene loss, Evolution, lcsh:Biotechnology, Chordate, Genomics, Hemichordate, 010603 evolutionary biology, 01 natural sciences, Genome, Evolution, Molecular, 03 medical and health sciences, Phylogenetics, lcsh:TP248.13-248.65, ACY3, biology.animal, Genetics, Animals, Humans, ASPA, Gene, Bilateria, Phylogeny, 030304 developmental biology, 0303 health sciences, Bacteria, biology, Vertebrate, Eukaryota, Horizontal gene transfer, biology.organism_classification, Lateral gene transfer, lcsh:Genetics, 030104 developmental biology, Prokaryotic Cells, Evolutionary biology, Human genome, Rate variation, Biotechnology, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3e7c55449a86c1a65e3c07cf708985b
https://doi.org/10.1101/229468

8

Disentangling the effects of selection and loss bias on gene dynamics

المؤلفون: Eugene V. Koonin, José A. Cuesta, Jaime Iranzo, Susanna C. Manrubia, Mikhail I. Katsnelson

المصدر: Proceedings of the National Academy of Sciences USA, 114, E5616-E5624
e-Archivo. Repositorio Institucional de la Universidad Carlos III de Madrid
instname
Proceedings of the National Academy of Sciences USA, 114, 28, pp. E5616-E5624
Repositorio Institucional de la Consejería de Sanidad de la Comunidad de Madrid
Consejería de Sanidad de la Comunidad de Madrid

مصطلحات موضوعية: 0301 basic medicine, Genome evolution, Gene Transfer, Horizontal, Gene loss, Matemáticas, Theory of Condensed Matter, 030106 microbiology, Gene Dosage, Biology, Genome, Host-Parasite Interactions, Evolution, Molecular, 03 medical and health sciences, Effective population size, Genome, Archaeal, Gene duplication, Parasitic Diseases, Gene family, Computer Simulation, Selection, Genetic, Selection, Gene, Genome size, Selection (genetic algorithm), Genetics, Multidisciplinary, Selection coefficient, Computational Biology, Horizontal gene transfer, Genomics, Models, Theoretical, 030104 developmental biology, PNAS Plus, Gene Expression Regulation, Mobile genetic elements, Evolutionary biology, Mutation, DNA Transposable Elements, Antiparasite defense, Genome, Bacterial

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::994662160d741efe2b0d07c687011c0e

9

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus

المؤلفون: Kyoko Ishino, Kazuharu Arakawa, Yuki Yoshida, Daiki D. Horikawa, Dominik R. Laetsch, Sujai Kumar, Masaru Tomita, Takekazu Kunieda, Lewis Stevens, Shiori Komine, Georgios Koutsovoulos, Mark Blaxter

المصدر: PLoS Biology, Vol 15, Iss 7, p e2002266 (2017)
PLoS Biology
Yoshida, Y, Koutsovoulos, G, Laetsch, D R, Stevens, L, Kumar, S, Horikawa, D D, Ishino, K, Komine, S, Kunieda, T, Tomita, M, Blaxter, M & Arakawa, K 2017, ' Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus ', PLoS Biology, vol. 15, no. 7, e2002266 . https://doi.org/10.1371/journal.pbio.2002266

مصطلحات موضوعية: 0301 basic medicine, Nematoda, Proteome, Genetic Linkage, Gene Transfer, Tardigrada, Bird Genomics, Hypsibius dujardini, Database and Informatics Methods, Genome Size, Rotifers, Invertebrate Genomics, Biology (General), Cryptobiosis, Phylogeny, Data Management, Horizontal Gene Transfer, Genomic Library, biology, General Neuroscience, Chromosome Mapping, High-Throughput Nucleotide Sequencing, Eukaryota, Phylogenetic Analysis, Genomics, Genomic Databases, Phylogenetics, Multigene Family, General Agricultural and Biological Sciences, Research Article, Computer and Information Sciences, Evolutionary Processes, Arthropoda, Gene Transfer, Horizontal, QH301-705.5, Zoology, Research and Analysis Methods, General Biochemistry, Genetics and Molecular Biology, Extremophiles, 03 medical and health sciences, Species Specificity, Genetics, Animals, Evolutionary Systematics, Onychophora, Desiccation, Panarthropoda, Taxonomy, Comparative genomics, Evolutionary Biology, Sequence Assembly Tools, Base Sequence, General Immunology and Microbiology, Gene Expression Profiling, Ecology and Environmental Sciences, Organisms, Reproducibility of Results, Biology and Life Sciences, Computational Biology, DNA, Comparative Genomics, Genome Analysis, Genomic Libraries, biology.organism_classification, Invertebrates, Primer, Multicellular organism, Biological Databases, 030104 developmental biology, Gene Expression Regulation, Genetic Loci, Animal Genomics, Evolutionary biology, Tardigrade, Genome-Wide Association Study

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::48e2dd9ae2214d3099d0c6a94d004281
https://doi.org/10.1101/112664

10

Prokaryotic phylogenies inferred from protein structural domains

المؤلفون: Hooman Hennessey, Eugene I. Shakhnovich, Eric J. Deeds

المصدر: Genome Research. 15:393-402

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::83ba233bc2765119a6e828ecfd332a13
https://doi.org/10.1101/gr.3033805

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