المؤلفون: Kurzawa N; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.; Institute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, Barcelona, Spain., Leo IR; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden., Stahl M; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden., Kunold E; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden., Becher I; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Audrey A; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden., Mermelekas G; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden., Huber W; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Mateus A; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Savitski MM; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. mikhail.savitski@embl.de., Jafari R; Clinical Proteomics Mass Spectrometry, Department of Oncology-Pathology Karolinska Institutet, Science for Life Laboratory, Solna, Sweden. rozbeh.jafari@ki.se.

المصدر: Nature chemical biology [Nat Chem Biol] 2023 Aug; Vol. 19 (8), pp. 962-971. Date of Electronic Publication: 2023 Mar 20.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101231976 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-4469 (Electronic) Linking ISSN: 15524450 NLM ISO Abbreviation: Nat Chem Biol Subsets: MEDLINE

مواضيع طبية MeSH: Proteome*/metabolism , Tandem Mass Spectrometry*/methods, Cell Line

المؤلفون: Lee JM; Graduate School of Medical Science & Engineering, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea., Hammarén HM; Genome Biology Unit, European Molecular Biology Laboratory, 69117, Heidelberg, Germany., Savitski MM; Genome Biology Unit, European Molecular Biology Laboratory, 69117, Heidelberg, Germany., Baek SH; Creative Research Initiatives Center for Epigenetic Code and Diseases, School of Biological Sciences, Seoul National University, Seoul, 08826, Korea. sbaek@snu.ac.kr.

المصدر: Nature communications [Nat Commun] 2023 Jan 13; Vol. 14 (1), pp. 201. Date of Electronic Publication: 2023 Jan 13.

نوع المنشور: Journal Article; Review; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Protein Processing, Post-Translational* , Proteins*/metabolism, Proteolysis ; Amino Acids/metabolism ; Protein Stability

المؤلفون: Hammarén HM; European Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany. henrik.hammaren@embl.de., Geissen EM; European Molecular Biology Laboratory, Structural and Computational Biology Unit, 69117, Heidelberg, Germany., Potel CM; European Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany., Beck M; Max Planck Institute of Biophysics, Department of Molecular Sociology, 60438, Frankfurt am Main, Germany. martin.beck@biophys.mpg.de., Savitski MM; European Molecular Biology Laboratory, Genome Biology Unit, 69117, Heidelberg, Germany. mikhail.savitski@embl.de.

المصدر: Nature communications [Nat Commun] 2022 Dec 02; Vol. 13 (1), pp. 7431. Date of Electronic Publication: 2022 Dec 02.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Protein Processing, Post-Translational* , Peptides*, Phosphorylation ; Proteolysis ; Peptide Hydrolases

المؤلفون: Sridharan S; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Hernandez-Armendariz A; Cell Biology and Biophysics Unit, EMBL, Heidelberg, Germany.; Collaboration for joint PhD degree between EMBL and Faculty of Biosciences, Heidelberg University, Heidelberg, Germany., Kurzawa N; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Potel CM; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Memon D; European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Beltrao P; European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Bantscheff M; Cellzome, a GSK company, Heidelberg, Germany., Huber W; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Cuylen-Haering S; Cell Biology and Biophysics Unit, EMBL, Heidelberg, Germany., Savitski MM; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. mikhail.savitski@embl.de.

المصدر: Nature chemical biology [Nat Chem Biol] 2022 Oct; Vol. 18 (10), pp. 1104-1114. Date of Electronic Publication: 2022 Jul 21.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101231976 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-4469 (Electronic) Linking ISSN: 15524450 NLM ISO Abbreviation: Nat Chem Biol Subsets: MEDLINE

مواضيع طبية MeSH: Biomolecular Condensates* , Proteome*/metabolism, Nuclear Proteins/metabolism ; Phosphorylation ; RNA/metabolism ; RNA Splicing Factors/metabolism ; Ribonucleoproteins/metabolism

المؤلفون: Kallergi E; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland., Daskalaki AD; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland., Kolaxi A; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland., Camus C; University of Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, F-33000, Bordeaux, France., Ioannou E; School of Biological Sciences, University of Crete, Heraklion, 70013, Greece., Mercaldo V; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland., Haberkant P; Proteomic Core Facility (PCF), European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Stein F; Proteomic Core Facility (PCF), European Molecular Biology Laboratory (EMBL), Heidelberg, Germany., Sidiropoulou K; School of Biological Sciences, University of Crete, Heraklion, 70013, Greece., Dalezios Y; School of Medicine, University of Crete, Heraklion, 71003, Greece.; Institute of Applied and Computational Mathematics (IACM), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece., Savitski MM; Proteomic Core Facility (PCF), European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.; Genome Biology Unit, European Molecular Biology Laboratory (EMBL), University of Rome Tor Vergata, Rome, 00133, Italy., Bagni C; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland.; Department of Biomedicine and Prevention, University of Rome Tor Vergata, Rome, 00133, Italy., Choquet D; University of Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, F-33000, Bordeaux, France.; University of Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UMS 3420, US 4, F-33000, Bordeaux, France., Hosy E; University of Bordeaux, CNRS, Interdisciplinary Institute for Neuroscience, IINS, UMR 5297, F-33000, Bordeaux, France., Nikoletopoulou V; Department of Fundamental Neurosciences, University of Lausanne, Lausanne, 1005, Switzerland. vassiliki.nikoletopoulou@unil.ch.

المصدر: Nature communications [Nat Commun] 2022 Feb 03; Vol. 13 (1), pp. 680. Date of Electronic Publication: 2022 Feb 03.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Autophagy/*physiology , Dendritic Spines/*physiology , Long-Term Synaptic Depression/*physiology , Proteome/*metabolism , Proteomics/*methods , Synaptic Potentials/*physiology, Animals ; Autophagy/genetics ; Autophagy-Related Protein 5/genetics ; Autophagy-Related Protein 5/metabolism ; Cells, Cultured ; Hippocampus/cytology ; Hippocampus/metabolism ; Hippocampus/physiology ; Male ; Mice, Inbred C57BL ; Mice, Knockout ; Mice, Transgenic ; Neuronal Plasticity/physiology ; Neurons/metabolism ; Neurons/physiology ; Pyramidal Cells/metabolism ; Pyramidal Cells/physiology ; Receptors, Metabotropic Glutamate/metabolism ; Receptors, N-Methyl-D-Aspartate/metabolism ; Mice

المؤلفون: Kurzawa N; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany.; Faculty of Biosciences, Heidelberg University, Heidelberg, 69120, Germany., Becher I; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Sridharan S; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany.; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Franken H; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Mateus A; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Anders S; Center for Molecular Biology of Heidelberg University (ZMBH), Im Neuenheimer Feld 282, Heidelberg, 69120, Germany., Bantscheff M; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany. marcus.x.bantscheff@gsk.com., Huber W; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany. wolfgang.huber@embl.org., Savitski MM; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany. mikhail.savitski@embl.de.

المصدر: Nature communications [Nat Commun] 2021 Dec 08; Vol. 12 (1), pp. 7267. Date of Electronic Publication: 2021 Dec 08.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Potel CM; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Kurzawa N; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.; Faculty of Biosciences, Heidelberg University, Heidelberg, Germany., Becher I; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Typas A; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Mateus A; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany. mikhail.savitski@embl.de., Savitski MM; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany. andre.mateus@embl.de.

المصدر: Nature methods [Nat Methods] 2021 Jul; Vol. 18 (7), pp. 757-759. Date of Electronic Publication: 2021 Jun 17.

نوع المنشور: Letter; Research Support, Non-U.S. Gov't; Comment

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: Hot Temperature* , Proteins*, Phosphorylation

المؤلفون: Kalxdorf M; Cellzome GmbH, GlaxoSmithKline (GSK), Heidelberg, Germany., Günthner I; Cellzome GmbH, GlaxoSmithKline (GSK), Heidelberg, Germany., Becher I; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Kurzawa N; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.; Faculty of Biosciences, Joint PhD Degree Program from EMBL and Heidelberg University, Heidelberg, Germany., Knecht S; Cellzome GmbH, GlaxoSmithKline (GSK), Heidelberg, Germany., Savitski MM; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Eberl HC; Cellzome GmbH, GlaxoSmithKline (GSK), Heidelberg, Germany. hans-christian.h.eberl@gsk.com., Bantscheff M; Cellzome GmbH, GlaxoSmithKline (GSK), Heidelberg, Germany. marcus.x.bantscheff@gsk.com.

المصدر: Nature methods [Nat Methods] 2021 Jan; Vol. 18 (1), pp. 84-91. Date of Electronic Publication: 2021 Jan 04.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: Benzamides/*pharmacology , Cell Membrane/*metabolism , Dioxoles/*pharmacology , Membrane Proteins/*metabolism , Proteome/*metabolism , Proteomics/*methods , Receptors, Antigen, T-Cell/*metabolism, Cell Membrane/drug effects ; Humans ; K562 Cells ; Ligands ; Membrane Proteins/analysis ; Membrane Proteins/drug effects ; Protein Binding ; Proteome/analysis ; Proteome/drug effects ; Receptors, Transforming Growth Factor beta/antagonists & inhibitors ; Temperature ; U937 Cells

المؤلفون: Kurzawa N; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany.; Faculty of Biosciences, Heidelberg University, Heidelberg, 69120, Germany., Becher I; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Sridharan S; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany.; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Franken H; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Mateus A; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany., Anders S; Center for Molecular Biology of Heidelberg University (ZMBH), Im Neuenheimer Feld 282, Heidelberg, 69120, Germany., Bantscheff M; Cellzome GmbH, GlaxoSmithKline, Meyerhofstrasse 1, Heidelberg, 69117, Germany. marcus.x.bantscheff@gsk.com., Huber W; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany. wolfgang.huber@embl.org., Savitski MM; European Molecular Biology Laboratory, Genome Biology Unit, Meyerhofstrasse 1, Heidelberg, 69117, Germany. mikhail.savitski@embl.de.

المصدر: Nature communications [Nat Commun] 2020 Nov 13; Vol. 11 (1), pp. 5783. Date of Electronic Publication: 2020 Nov 13.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Proteomics* , Temperature*, Computational Biology/*methods , Proteome/*metabolism, Adenosine Triphosphate/metabolism ; Databases, Protein ; Guanosine Triphosphate/metabolism ; Hep G2 Cells ; Histone Deacetylase Inhibitors/pharmacology ; Histone Deacetylases/metabolism ; Humans ; Hydroxamic Acids/chemistry ; Hydroxamic Acids/pharmacology ; Indoles/chemistry ; Indoles/pharmacology ; Leucyl Aminopeptidase/metabolism ; Ligands ; Pharmaceutical Preparations/chemistry ; Pharmaceutical Preparations/metabolism ; Protein Binding ; Repressor Proteins/antagonists & inhibitors ; Repressor Proteins/metabolism

المؤلفون: Hoermann B; Faculty of Biology, Institute of Biology III, University of Freiburg, Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany.; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.; Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences, Heidelberg, Germany., Kokot T; Faculty of Biology, Institute of Biology III, University of Freiburg, Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany., Helm D; European Molecular Biology Laboratory, Proteomics Core Facility, Heidelberg, Germany., Heinzlmeir S; Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany.; Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany., Chojnacki JE; Faculty of Biology, Institute of Biology III, University of Freiburg, Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany.; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Schubert T; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany.; Signalling Factory, University of Freiburg, Freiburg, Germany., Ludwig C; Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany., Berteotti A; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany., Kurzawa N; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.; Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences, Heidelberg, Germany., Kuster B; Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany.; Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany., Savitski MM; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.; European Molecular Biology Laboratory, Proteomics Core Facility, Heidelberg, Germany., Köhn M; Faculty of Biology, Institute of Biology III, University of Freiburg, Freiburg, Germany. maja.koehn@bioss.uni-freiburg.de.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany. maja.koehn@bioss.uni-freiburg.de.; European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany. maja.koehn@bioss.uni-freiburg.de.

المصدر: Nature communications [Nat Commun] 2020 Jul 17; Vol. 11 (1), pp. 3583. Date of Electronic Publication: 2020 Jul 17.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Protein Phosphatase 1/*chemistry , Protein Phosphatase 1/*metabolism , Protein Phosphatase 2/*chemistry , Protein Phosphatase 2/*metabolism, 14-3-3 Proteins/genetics ; 14-3-3 Proteins/metabolism ; Adaptor Proteins, Signal Transducing/genetics ; Adaptor Proteins, Signal Transducing/metabolism ; Amino Acid Motifs ; Catalytic Domain ; Holoenzymes/chemistry ; Holoenzymes/genetics ; Holoenzymes/metabolism ; Humans ; Phosphorylation ; Protein Binding ; Protein Engineering ; Protein Phosphatase 1/genetics ; Protein Phosphatase 2/genetics ; Protein Subunits/chemistry ; Protein Subunits/genetics ; Protein Subunits/metabolism ; Substrate Specificity