نتائج البحث - "ISO-seq"

1

Extending rnaSPAdes functionality for hybrid transcriptome assembly

المؤلفون: Andrey D. Prjibelski, G. Puglia, Alla Mikheenko, Daniela Giordano, Alla Lapidus, Domenico Vitale, Dmitry Antipov, Elena Bushmanova

المصدر: BMC Bioinformatics, Vol 21, Iss S12, Pp 1-9 (2020)
BMC bioinformatics 21 (2020). doi:10.1186/s12859-020-03614-2
info:cnr-pdr/source/autori:Prjibelski, Andrey D.; Puglia, Giuseppe D.; Antipov, Dmitry; Bushmanova, Elena; Giordano, Daniela; Mikheenko, Alla; Vitale, Domenico; Lapidus, Alla/titolo:Extending rnaSPAdes functionality for hybrid transcriptome assembly/doi:10.1186%2Fs12859-020-03614-2/rivista:BMC bioinformatics/anno:2020/pagina_da:/pagina_a:/intervallo_pagine:/volume:21
BMC Bioinformatics

مصطلحات موضوعية: Gene isoform, Computer science, Sequence assembly, RNA-Seq, Hybrid assembly, Computational biology, Oxford nanopores, lcsh:Computer applications to medicine. Medical informatics, Biochemistry, Transcriptome, 03 medical and health sciences, Nanopores, Exon, 0302 clinical medicine, Structural Biology, Databases, Genetic, De novo assembly, Humans, Transcriptomics, Molecular Biology, Gene, lcsh:QH301-705.5, 030304 developmental biology, 0303 health sciences, Transcriptome assembly, Applied Mathematics, Iso-seq, Reproducibility of Results, RNA, Pipeline (software), Computer Science Applications, Nanopore, lcsh:Biology (General), MCF-7 Cells, lcsh:R858-859.7, Nanopore sequencing, DNA microarray, 030217 neurology & neurosurgery, Software, Algorithms, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c182b13fc06726929f988a8d014c7b9
http://link.springer.com/article/10.1186/s12859-020-03614-2

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2

PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important Phenotypes

المؤلفون: Ali Ali, Gary H. Thorgaard, Mohamed Salem

المصدر: Frontiers in Genetics
Frontiers in Genetics, Vol 12 (2021)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::39d0f4d0c7745c066d0ea8f3952593ec
http://europepmc.org/articles/PMC8321248

3

Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure

المؤلفون: Xiaoming Zhong, Ni A. An, Wei-Zhen Zhou, Jie Zhang, Mingjun Ji, Yumei Li, Qing Sunny Shen, Wanqiu Ding, Qi Peng, Chuan-Yun Li

المصدر: Briefings in Bioinformatics

مصطلحات موضوعية: Gene isoform, transcriptome evolution, Polyadenylation, AcademicSubjects/SCI01060, Transcription, Genetic, Iso-Seq, Genomics, Computational biology, Macaque, RNA Transport, Transcriptome, Evolution, Molecular, 03 medical and health sciences, 0302 clinical medicine, Species Specificity, biology.animal, Gene expression, subcellular localization, RNA Isoforms, Animals, Humans, RNA, Messenger, Nucleotide Motifs, Molecular Biology, Gene, 3' Untranslated Regions, 030304 developmental biology, 0303 health sciences, biology, Models, Genetic, Gene Expression Profiling, gene models, biology.organism_classification, Macaca mulatta, Rhesus macaque, Gene Expression Regulation, Organ Specificity, Problem Solving Protocol, Poly A, 030217 neurology & neurosurgery, Information Systems, rhesus macaque

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4fdf0cdc66e04842c8006a3141545ae
http://europepmc.org/articles/PMC8574621

4

Comparative Transcriptome Analysis Reveals Sex-Based Differences during the Development of the Adult Parasitic Wasp

المؤلفون: Yuenan Zhou, Huang Jianhua, Zhizhi Wang, Chen Xuexin, Shuang Xie, Min Shi, Pei Yang

المصدر: Genes
Volume 12
Issue 6
Genes, Vol 12, Iss 896, p 896 (2021)

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1df0240dc50d4293757bf150c48947a4
https://pubmed.ncbi.nlm.nih.gov/34200644

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5

Alternative mRNA Processing of Innate Response Pathways in Respiratory Syncytial Virus (RSV) Infection

المؤلفون: Xiaofang Xu, Allan R. Brasier, Dianhua Qiao, Morgan Mann

المصدر: Viruses
Volume 13
Issue 2
Viruses, Vol 13, Iss 218, p 218 (2021)

مصطلحات موضوعية: 0301 basic medicine, Gene isoform, lcsh:QR1-502, Respiratory Syncytial Virus Infections, Biology, lcsh:Microbiology, Article, interferon (IFN), Transcriptome, 03 medical and health sciences, Exon, alternative splicing, 0302 clinical medicine, Virology, Transcriptional regulation, Humans, RNA, Messenger, RNA Processing, Post-Transcriptional, Gene, Alternative splicing, differential polyadenylation, Intron, Transcription Factor RelA, Epithelial Cells, single-molecule, real-time (SMRT), Iso-Seq™, real-time (SMRT), Immunity, Innate, Cell biology, 030104 developmental biology, Infectious Diseases, MRNA Sequencing, 030220 oncology & carcinogenesis, Respiratory Syncytial Virus, Human, interferon regulatory factor (IRF), single-molecule

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca82420de691d0831aa0bfde00e616eb

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6

Guidelines for Setting Up a mRNA Sequencing Experiment and Best Practices for Bioinformatic Data Analysis

المؤلفون: Salvatore Esposito, Teresa Rosa Galise, Nunzio D’Agostino

المساهمون: Galise, Teresa Rosa, Esposito, Salvatore, D'Agostino, Nunzio

المصدر: Methods in Molecular Biology ISBN: 9781071612002

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1eb79142de1907ca481650b6abb20b9
https://doi.org/10.1007/978-1-0716-1201-9_10

7

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

المصدر: Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-14 (2020)

مصطلحات موضوعية: 0301 basic medicine, Male, Lineage (genetic), Science, Iso-Seq, General Physics and Astronomy, Biology, Subspecies, Allelic Imbalance, Long reads, Genome, Polymorphism, Single Nucleotide, General Biochemistry, Genetics and Molecular Biology, Article, Structural variation, 03 medical and health sciences, 0302 clinical medicine, Full-Length Transcriptome, INDEL Mutation, Animals, Copy-number variation, RNA, Messenger, lcsh:Science, Gene, Alleles, Animal breeding, Repetitive Sequences, Nucleic Acid, PacBio, Multidisciplinary, Base Sequence, Haplotype, Genetic Variation, Molecular Sequence Annotation, General Chemistry, Genomics, Chromosomes, Mammalian, Computational biology and bioinformatics, 030104 developmental biology, Haplotypes, Evolutionary biology, Genetic Loci, lcsh:Q, Cattle, Female, 030217 neurology & neurosurgery, Reference genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b6935f12496cd48a6ca830b2c2f8e23f

8

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

المساهمون: The Wellcome Trust Sanger Institute [Cambridge], Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Moredun Research Institute [Penicuik, UK] (MRI), Institute of Parasitology [Ste Anne de Bellevue, Québec], McGill University = Université McGill [Montréal, Canada], Royal (Dick) School of Veterinary Studies, European Molecular Biology Laboratory [Hinxton], Faculty of Veterinary Medicine, University of Calgary, University of Calgary, Infectiologie et Santé Publique (UMR ISP), Université de Tours-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), University of Veterinary and Animal Sciences [Lahore, Pakistan] (UVAS), Wellcome's core funding of the Wellcome Sanger Institute (grant WT206194), Wellcome Trust Project Grant to JSG (grant 067811), the Biotechnology and Biological Sciences Research Council (BBSRC) grants (BB/M003949/1, BB/P024610/1 and BB/K020048/1), Université de Tours (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

المصدر: Communications Biology
Communications Biology, Nature Publishing Group, 2020, 3 (1), 16 p. ⟨10.1038/s42003-020-01377-3⟩
Communications Biology, Vol 3, Iss 1, Pp 1-16 (2020)
Doyle, S R, Tracey, A, Laing, R, Holroyd, N E, Bartley, D, Bazant, W, Beasley, H, Beech, R N, Britton, C, Brooks, K, Chaudhry, U N, Maitland, K, Martinelli, A, Noonan, J, Paulini, M, Quail, M A, Redman, E, Rodgers, F H, Sallé, G, Shabbir, M Z, Sankaranarayanan, G, Wit, J, Howe, K L, Sargison, N, Devaney, E, Berriman, M, Gilleard, J S & Cotton, J A 2020, ' Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm ', Communications biology . https://doi.org/10.1038/s42003-020-01377-3

مصطلحات موضوعية: Male, Population genetics, Medicine (miscellaneous), Sequence assembly, Genome informatics, Population genomics, transcriptomics, 0302 clinical medicine, Haemonchus contortus, Intestinal Diseases, Parasitic, lcsh:QH301-705.5, Caenorhabditis elegans, [SDV.EE]Life Sciences [q-bio]/Ecology, environment, 0303 health sciences, biology, Genomics, Non-model organisms, 3. Good health, Caenorhabditis, Female, Haemonchus, General Agricultural and Biological Sciences, Parasitic infection, population genomics, Computational biology, Models, Biological, Chromosomes, Article, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, parasitic diseases, PacBio long-read sequencing, Animals, Humans, Gene, 030304 developmental biology, Genome, Helminth, Life Cycle Stages, [SDV.GEN]Life Sciences [q-bio]/Genetics, Genetic diversity, [SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health, Comparative genomics, biology.organism_classification, lcsh:Biology (General), chromosomal genome assembly, Iso- Seq cDNA sequencing, genetic variation, Haemonchiasis, Transcriptome, 030217 neurology & neurosurgery, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis