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المؤلفون: Anna Niarakis, María Rodríguez Martínez, Matteo Barberis, Jonathan R. Karr, Laurence Calzone, Andreas Dräger, Claudine Chaouiya, Marc R. Birtwistle, Julio Saez-Rodriguez, Jan Hasenauer, Juilee Thakar, Tomáš Helikar
المساهمون: Laboratoire de recherche européen pour la polyarthrite rhumatoïde (GenHotel), Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay, Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), M.Ba. was supported by the Systems Biology Grant of the University of Surrey. A.D. was supported by infrastructural funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Cluster of Excellence EXC 2124 Controlling Microbes to Fight Infections. J.R.K. was supported by National Institutes of Health (NIH) [5R35GM119771]. T.H. was supported by NIH [5R35GM119770]. M.R.M. was supported by Horizon 2020 (H2020) [826121, 765158 and 813545]., Institut de Mathématiques de Marseille (I2M), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), University of Tübingen, Diane E. Kovats, Steven Leard, Nicolas Gambardella Le Novère, Libera Lo Presti
المصدر: Bioinformatics
Bioinformatics, 2021, 37 (21), pp.3702-3706. ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, Oxford University Press (OUP), 2021, 37 (21), pp.3702-3706. ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, Oxford University Press (OUP), 2021, ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, 2021, ⟨10.1093/bioinformatics/btab229⟩مصطلحات موضوعية: Statistics and Probability, AcademicSubjects/SCI01060, Exploit, Computer science, Computational Modelling, SysMod, biological systems, computer.software_genre, Biochemistry, GeneralLiterature_MISCELLANEOUS, Ismb 2021, Data-driven, 03 medical and health sciences, 0302 clinical medicine, data-driven computational modelling, Molecular Biology, Multi-scale modelling, 030304 developmental biology, 0303 health sciences, Computational model, Data-driven modelling, Intelligent decision support system, COVID-19, Conference, Online forum, Special Interest Group, Data science, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Computer Science Applications, Computational Mathematics, [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, Computational Theory and Mathematics, ECCB, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], ISMB, computer, 030217 neurology & neurosurgery, Data integration
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f4c891887fb4c5600ca02ba3e2a0467
https://hal.science/hal-03515692 -
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المؤلفون: Isabel Moreno-Indias, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adilovic, Onder Aydemir, Burcu Bakir-Gungor, Enrique Carrillo-de Santa Pau, Domenica D’Elia, Mahesh S. Desai, Laurent Falquet, Aycan Gundogdu, Karel Hron, Thomas Klammsteiner, Marta B. Lopes, Laura Judith Marcos-Zambrano, Cláudia Marques, Michael Mason, Patrick May, Lejla Pašić, Gianvito Pio, Sándor Pongor, Vasilis J. Promponas, Piotr Przymus, Julio Saez-Rodriguez, Alexia Sampri, Rajesh Shigdel, Blaz Stres, Ramona Suharoschi, Jaak Truu, Ciprian-Octavian Truică, Baiba Vilne, Dimitrios Vlachakis, Ercument Yilmaz, Georg Zeller, Aldert L. Zomer, David Gómez-Cabrero, Marcus J. Claesson
المساهمون: Epidemiology, AGÜ, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü, Bakir-Gungor, Burcu, Klinische infectiologie en microb. lab., dI&I I&I-4, NOVALincs, NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)
المصدر: ML4Microbiome 2021, ' Statistical and Machine Learning Techniques in Human Microbiome Studies : Contemporary Challenges and Solutions ', Frontiers in Microbiology, vol. 12, 635781 . https://doi.org/10.3389/fmicb.2021.635781
Frontiers in Microbiology, 12:635781. Frontiers Media S.A.
Frontiers in Microbiology, 12. Frontiers Media S.A.
Frontiers in Microbiology, Vol 12 (2021)
Frontiers in Microbiology
Frontiers in microbiology 12 (2021): 9–1. doi:10.3389/fmicb.2021.635781
info:cnr-pdr/source/autori:Isabel Moreno-Indias1,2*, Leo Lahti3, Miroslava Nedyalkova4, Ilze Elbere5, Gennady Roshchupkin6, Muhamed Adilovic7, Onder Aydemir8, Burcu Bakir-Gungor9, Enrique Carrillo-de Santa Pau10, Domenica D'Elia11, Mahesh S. Desai12,13, Laurent Falquet14,15, Aycan Gundogdu16,17, Karel Hron18, Thomas Klammsteiner19, Marta B. Lopes20,21, Laura Judith Marcos-Zambrano10, Cláudia Marques22, Michael Mason23, Patrick May24, Lejla Pa?i?25, Gianvito Pio26, Sándor Pongor27, Vasilis J. Promponas28, Piotr Przymus29, Julio Saez-Rodriguez30, Alexia Sampri31, Rajesh Shigdel32, Blaz Stres33,34,35, Ramona Suharoschi36, Jaak Truu37, Ciprian-Octavian Truic?38, Baiba Vilne39, Dimitrios Vlachakis40, Ercument Yilmaz41, Georg Zeller42, Aldert L. Zomer43, David Gómez-Cabrero44 and Marcus J. Claesson45 on behalf of ML4Microbiome/titolo:Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions/doi:10.3389%2Ffmicb.2021.635781/rivista:Frontiers in microbiology/anno:2021/pagina_da:9/pagina_a:1/intervallo_pagine:9–1/volume:12
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAPمصطلحات موضوعية: Microbiology (medical), Standardization, Computer science, lcsh:QR1-502, microbiome, Variation (game tree), Machine learning, computer.software_genre, Microbiology, lcsh:Microbiology, 03 medical and health sciences, 0302 clinical medicine, ML4Microbiome, Microbiome, Biomedicine, 030304 developmental biology, 0303 health sciences, Data processing, medical applications, business.industry, Human microbiome, health, bioinformatics, Benchmarking, personalized medicine, machine learning, biomarker identification, Perspective, Artificial intelligence, Personalized medicine, business, computer, 030217 neurology & neurosurgery
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::630282fc1cdfbf74fee209953be4bf91
https://findresearcher.sdu.dk:8443/ws/files/180858097/fmicb_12_635781.pdf -
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المؤلفون: Julio Saez-Rodriguez, Aurelien Dugourd
المصدر: Current Opinion in Systems Biology
مصطلحات موضوعية: Proteomics, Phosphoproteomics, Computer science, Regulator, Footprint, Data analysis, Integration, Computational biology, Data type, General Biochemistry, Genetics and Molecular Biology, Article, 03 medical and health sciences, 0302 clinical medicine, Metabolomics, Drug Discovery, Leverage (statistics), Transcriptomics, 030304 developmental biology, 0303 health sciences, Multi-omics, Functional, Applied Mathematics, Trans-omics, Mechanistic, Computer Science Applications, Modeling and Simulation, Functional analysis (psychology), 030217 neurology & neurosurgery
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المؤلفون: Annika Reinke, Bram van Ginneken, Annette Kopp-Schneider, Tal Arbel, Anne L. Martel, Matthias Eisenmann, Henning Müller, Allan Hanbury, Pierre Jannin, Sinan Onogur, Julio Saez-Rodriguez, Bennett A. Landman, Michal Kozubek, Lena Maier-Hein
المساهمون: German Cancer Research Center - Deutsches Krebsforschungszentrum [Heidelberg] (DKFZ), Masaryk University [Brno] (MUNI), University of Toronto, McGill University = Université McGill [Montréal, Canada], Vienna University of Technology (TU Wien), Laboratoire Traitement du Signal et de l'Image (LTSI), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Institut National de la Santé et de la Recherche Médicale (INSERM), University of Applied Sciences and Arts of Western Switzerland (HES-SO), University of Geneva [Switzerland], Heidelberg University, Radboud University Medical Center [Nijmegen], Vanderbilt University [Nashville], ERC-2015-StG-37960, European Research Council, RGPIN-2016-06283, Natural Sciences and Engineering Research Council of Canada, 705772, Canadian Cancer Society, CZ.02.1.01/0.0/0.0/16_013/0001775, Ministerstvo Školství, Mládeže a Tělovýchovy, 1452485, National Science Foundation, R01-EB017230-01A1, NIH Clinical Center, Université de Rennes (UR)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université de Genève = University of Geneva (UNIGE), HAL UR1, Admin
المصدر: Medical Image Analysis
Medical Image Analysis, Elsevier, 2020, 66, pp.101796. ⟨10.1016/j.media.2020.101796⟩
Medical Image Analysis, 66
Medical Image Analysis, 2020, 66, pp.101796. ⟨10.1016/j.media.2020.101796⟩مصطلحات موضوعية: FOS: Computer and information sciences, Biomedical Research, Computer science, Computer Vision and Pattern Recognition (cs.CV), media_common.quotation_subject, Computer Science - Computer Vision and Pattern Recognition, Good scientific practice, Biomedical challenges, Health Informatics, Guideline, Biomedical image analysis, Article, Field (computer science), Task (project management), Computer Science - Computers and Society, 03 medical and health sciences, 0302 clinical medicine, All institutes and research themes of the Radboud University Medical Center, Computers and Society (cs.CY), FOS: Electrical engineering, electronic engineering, information engineering, Humans, Radiology, Nuclear Medicine and imaging, Quality (business), Set (psychology), 030304 developmental biology, Interpretability, media_common, [SDV.IB] Life Sciences [q-bio]/Bioengineering, 0303 health sciences, Radiological and Ultrasound Technology, Image and Video Processing (eess.IV), Reproducibility of Results, Benchmarking, Electrical Engineering and Systems Science - Image and Video Processing, Prognosis, Computer Graphics and Computer-Aided Design, Data science, Checklist, 3. Good health, Transparency (graphic), [SDV.IB]Life Sciences [q-bio]/Bioengineering, Computer Vision and Pattern Recognition, 030217 neurology & neurosurgery, Rare cancers Radboud Institute for Health Sciences [Radboudumc 9]
وصف الملف: application/pdf
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المؤلفون: Buu Truong, Pham Hv, Nikolaus Rajewsky, Thuc Duy Le, Enrico Glaab, Peter Banda, Duc A. Tran, Disheng Mao, Adi L. Tarca, Gaurav Bhatti, Jovan Tanevski, Chang Shu, K e Xu, Gustavo Stolovitzky, Roberto Romero, Nestoras Karathanasis, Phillipe Loher, Jianhua Ruan, Yuping Zhang, Thanh Nguyen, Ying Hu, Roland Krause, Yang Chen, Peng Qiu, Zhengqing Ouyang, Pablo Meyer, Nikos Karaiskos, Xiaomei L, Maryam Zand, Julio Saez-Rodriguez, Mehmet Eren Ahsen, Thomas Yu, Attila Gábor, Xiaoyu Liang, Xuan Zhang, Christoph Hafemeister
مصطلحات موضوعية: 0303 health sciences, Computer science, Single cell transcriptomics, RNA, Embryo, In situ hybridization, Computational biology, Developmental genes, Transcriptome, 03 medical and health sciences, 0302 clinical medicine, Gene selection, Transcription (biology), Gene, 030217 neurology & neurosurgery, Organism, 030304 developmental biology
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3795c4179049ab2e4d2915f5647fc86b
https://doi.org/10.1101/796029 -
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المؤلفون: Mi Yang, Pooya Zakeri, Julio Saez-Rodriguez, Gerard J. P. van Westen, Yves Moreau, Jaak Simm, Chi Chung Lam
المصدر: Scientific reports 9, 7106 (2019). doi:10.1038/s41598-019-43503-0
Scientific Reports, Vol 9, Iss 1, Pp 1-1 (2019)
Scientific Reportsمصطلحات موضوعية: Computer science, Drug target, lcsh:Medicine, Multi-task learning, Antineoplastic Agents, Machine learning, computer.software_genre, Machine Learning, 03 medical and health sciences, Drug Delivery Systems, 0302 clinical medicine, Text mining, Neoplasms, Drug Discovery, Humans, Author Correction, lcsh:Science, 030304 developmental biology, 0303 health sciences, Multidisciplinary, business.industry, lcsh:R, Drug Repositioning, Computational Biology, Bayes Theorem, 3. Good health, Treatment Outcome, ComputingMethodologies_DOCUMENTANDTEXTPROCESSING, lcsh:Q, Artificial intelligence, business, computer, Algorithms, 030217 neurology & neurosurgery, Signal Transduction
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المؤلفون: Enio Gjerga, Julio Saez-Rodriguez, Athanasios Didangelos, Panuwat Trairatphisan, Jonathan Barratt, Anika Liu
المصدر: npj Systems Biology and Applications, Vol 5, Iss 1, Pp 1-10 (2019)
biorxiv
npj Systems biology and applications 5, 40 (2019). doi:10.1038/s41540-019-0118-z
NPJ Systems Biology and Applications
bioRxiv
npj Systems Biology and Applicationsمصطلحات موضوعية: 0301 basic medicine, Computer science, 030232 urology & nephrology, Computational biology, General Biochemistry, Genetics and Molecular Biology, Article, 03 medical and health sciences, 0302 clinical medicine, ddc:570, Drug Discovery, Humans, Gene Regulatory Networks, Upstream (networking), Transcription factor, lcsh:QH301-705.5, Integer programming, 030304 developmental biology, 0303 health sciences, Network architecture, Applied Mathematics, Gene Expression Profiling, Wnt signaling pathway, Computational Biology, Programming, Linear, Expression (computer science), Microarray Analysis, Regulatory networks, Computer Science Applications, Gene expression profiling, Identification (information), 030104 developmental biology, Expression (architecture), Gene Expression Regulation, lcsh:Biology (General), Modeling and Simulation, Identification (biology), Causal reasoning, Signal transduction, 030217 neurology & neurosurgery, Software, Algorithms, Signal Transduction, Transcription Factors
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6435d8e0a93cfe3a1a28b6a4159c4cd8
https://doi.org/10.1101/541888 -
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المؤلفون: Hanna Najgebauer, Julio Saez-Rodriguez, Clare Pacini, Mi Yang, Mathew J. Garnett, Hayley E. Francies, Francesco Iorio, Euan A. Stronach
المصدر: Cell Systems. 10:424-432.e6
مصطلحات موضوعية: Prioritization, Histology, Future studies, Computer science, Genomics, Computational biology, Models, Biological, Pathology and Forensic Medicine, 03 medical and health sciences, 0302 clinical medicine, Cell Line, Tumor, Neoplasms, medicine, Animals, Humans, Selection (genetic algorithm), 030304 developmental biology, 0303 health sciences, Genome, Cancer, Cell Biology, medicine.disease, R package, Research Design, Pharmacogenomics, Cancer cell lines, Software, 030217 neurology & neurosurgery
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee716f210d5cda788aecb76e24845263
https://doi.org/10.1016/j.cels.2020.04.007 -
9Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis
المساهمون: University of Zurich, Saez-Rodriguez, Julio
المصدر: Cell reports 29(1), 202-211.e6 (2019). doi:10.1016/j.celrep.2019.08.077
Cell Reports, Vol 29, Iss 1, Pp 202-211.e6 (2019)
Cell Reports
Cell Reports, 29 (1)مصطلحات موضوعية: 0301 basic medicine, Multiplexed imaging, Computer science, Gene Expression, Breast Neoplasms, 610 Medicine & health, Genetics and Molecular Biology, Cell Communication, Computational biology, Spatial variance, Article, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, 0302 clinical medicine, Component analysis, 1300 General Biochemistry, Genetics and Molecular Biology, Humans, Mass cytometry, Random effect model, lcsh:QH301-705.5, Spatial analysis, Gaussian Process, Analysis of Variance, Spatial structure, Gene Expression Profiling, Spatially resolved, Protein Expression Profiling, 030104 developmental biology, lcsh:Biology (General), General Biochemistry, RNA, Female, Spatial variability, 11493 Department of Quantitative Biomedicine, Software, 030217 neurology & neurosurgery
وصف الملف: Modeling_Cell-Cell_Interactions_from_Spatial_Molecular_Data_with_Spatial_Variance_Component_Analysis.pdf - application/pdf; application/application/pdf
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المساهمون: University of Zurich
مصطلحات موضوعية: 0303 health sciences, Computer science, Spatially resolved, Cell, 610 Medicine & health, Protein Expression Profiling, Computational biology, Spatial variance, Expression (mathematics), 03 medical and health sciences, 0302 clinical medicine, medicine.anatomical_structure, Component analysis, medicine, Mass cytometry, 11493 Department of Quantitative Biomedicine, 030217 neurology & neurosurgery, Spatial organization, 030304 developmental biology
وصف الملف: 265256v3.full.pdf - application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ca64789bc9ea0c48faf98d32b871064
https://doi.org/10.1101/265256
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