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المؤلفون: Santosh Vempala, Jennifer Modamio, Alejandro Maass, Costas D. Maranas, Sylvain Arreckx, Masoud Ahookhosh, Miguel A.P. Oliveira, Stefania Magnusdottir, Nathan E. Lewis, Chiam Yu Ng, Aarash Bordbar, Bernhard O. Palsson, Inna Kuperstein, Lemmer P. El Assal, Lin Wang, Benjamin Cousins, German Preciat, Sarah M. Keating, Egils Stalidzans, Iñigo Apaolaza, Nicolas Sompairac, William A. Bryant, Vanja Vlasov, Phan Tu Vuong, Siu Hung Joshua Chan, Andrejs Kostromins, Laurent Heirendt, Yuekai Sun, Sebastián N. Mendoza, Ronan M. T. Fleming, Francisco J. Aragón Artacho, Michael Hucka, Hulda S. Haraldsdóttir, Jacek Wachowiak, Susan Ghaderi, Marouen Ben Guebila, Almut Heinken, Ines Thiele, Hoai M. Le, Thomas Sauter, James T. Yurkovich, Alise Žagare, Diana C. El Assal, Maike K. Aurich, H. Scott Hinton, Alberto Noronha, Catherine M. Clancy, Thomas Pfau, Andrei Zinovyev, Michael A. Saunders, Luis Vitores Valcárcel, John T. Sauls, Anne Richelle, Ding Ma, Francisco J. Planes
المساهمون: Laboratoire de Génie Informatique, de Production et de Maintenance (LGIPM), Université de Lorraine (UL), AIMMS, Systems Bioinformatics, Universidad de Alicante. Departamento de Matemáticas, Laboratorio de Optimización (LOPT)
المصدر: Nature Protocols
Nature Protocols, Nature Publishing Group, 2019, 14 (3), pp.639-702. ⟨10.1038/s41596-018-0098-2⟩
Nature Protocols, 14(3), 639-702. Nature Publishing Group
RUA. Repositorio Institucional de la Universidad de Alicante
Universidad de Alicante (UA)
Nature protocols, vol 14, iss 3
Heirendt, L, Arreckx, S, Pfau, T, Mendoza, S N, Richelle, A, Heinken, A, Haraldsdóttir, H S, Wachowiak, J, Keating, S M, Vlasov, V, Magnusdóttir, S, Ng, C Y, Preciat, G, Žagare, A, Chan, S H J, Aurich, M K, Clancy, C M, Modamio, J, Sauls, J T, Noronha, A, Bordbar, A, Cousins, B, El Assal, D C, Valcarcel, L V, Apaolaza, I, Ghaderi, S, Ahookhosh, M, Ben Guebila, M, Kostromins, A, Sompairac, N, Le, H M, Ma, D, Sun, Y, Wang, L, Yurkovich, J T, Oliveira, M A P, Vuong, P T, El Assal, L P, Kuperstein, I, Zinovyev, A, Hinton, H S, Bryant, W A, Aragón Artacho, F J, Planes, F J, Stalidzans, E, Maass, A, Vempala, S, Hucka, M, Saunders, M A, Maranas, C D, Lewis, N E, Sauter, T, Palsson, B, Thiele, I & Fleming, R M T 2019, ' Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 ', Nature Protocols, vol. 14, no. 3, pp. 639-702 . https://doi.org/10.1038/s41596-018-0098-2
Heirendt, L, Arreckx, S, Pfau, T, Mendoza, S N, Richelle, A, Heinken, A, Haraldsdottir, H S, Wachowiak, J, Keating, S M, Vlasov, V, Magnusdottir, S, Ng, C Y, Preciat, G, Zagare, A, Chan, S H J, Aurich, M K, Clancy, C M, Modamio, J, Sauls, J T, Noronha, A, Bordbar, A, Cousins, B, El Assal, D C, Valcarcel, L V, Apaolaza, I, Ghaderi, S, Ahookhosh, M, Ben Guebila, M, Kostromins, A, Sompairac, N, Le, H M, Ma, D, Sun, Y, Wang, L, Yurkovich, J T, Oliveira, M A P, Vuong, P T, El Assal, L P, Kuperstein, I, Zinovyev, A, Hinton, H S, Bryant, W A, Aragon Artacho, F J, Planes, F J, Stalidzans, E, Maass, A, Vempala, S, Hucka, M, Saunders, M A, Maranas, C D, Lewis, N E, Sauter, T, Palsson, B O, Thiele, I & Fleming, R M T 2019, ' Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 ', Nature Protocols, vol. 14, no. 3, pp. 639-702 . https://doi.org/10.1038/s41596-018-0098-2مصطلحات موضوعية: Computer science, Bioinformatics, Systems biology, Interoperability, Cobra, Multidisciplinary, general & others [F99] [Life sciences], computer.software_genre, Models, Biological, Medical and Health Sciences, Article, General Biochemistry, Genetics and Molecular Biology, Multidisciplinaire, généralités & autres [F99] [Sciences du vivant], 03 medical and health sciences, 0302 clinical medicine, Software, [INFO.INFO-LG]Computer Science [cs]/Machine Learning [cs.LG], Models, Estadística e Investigación Operativa, Protocol (object-oriented programming), ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, computer.programming_language, 0303 health sciences, Computational model, Software suite, Genome, q-bio.QM, Biochemical constraint-based models, business.industry, Systems Biology, Biological Sciences, Biological, Toolbox, Chemical Sciences, Systems engineering, Data mining, [MATH.MATH-OC]Mathematics [math]/Optimization and Control [math.OC], business, computer, 030217 neurology & neurosurgery, Metabolic Networks and Pathways, Constraint-based reconstruction and analysis (COBRA), Biotechnology
وصف الملف: application/pdf; Print
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المؤلفون: Ines Thiele, Laurent Heirendt, Ronan M. T. Fleming
المساهمون: National Centre of Excellence in Research (NCER) on Parkinson’s disease [sponsor], Luxembourg National Research Fund (FNR) ATTRACT program grant (FNR/A12/01) [sponsor], U.S. Department of Energy, Offices of Advanced Scientific Computing Research and the Biological and Environmental Research as part of the Scientific Discovery Through Advanced Computing program, grant no. DE-SC0010429 [sponsor], Luxembourg Centre for Systems Biomedicine (LCSB): Systems Biochemistry (Fleming Group) [research center], Luxembourg Centre for Systems Biomedicine (LCSB): Molecular Systems Physiology (Thiele Group) [research center]
المصدر: Bioinformatics, 33(9), 1421-1423. Oxford University Press
Bioinformatics
Bioinformatics. Oxford University Press (2017).مصطلحات موضوعية: Parallel computing, 0301 basic medicine, Statistics and Probability, Computer science, Distributed computing, 0206 medical engineering, Metabolic networks, 02 engineering and technology, Biochemistry, biophysics & molecular biology [F05] [Life sciences], Quantitative Biology - Quantitative Methods, Biochemistry, Models, Biological, Computational science, Multidisciplinaire, généralités & autres [C99] [Ingénierie, informatique & technologie], 03 medical and health sciences, Flux variability analysis, Code (cryptography), Biochimie, biophysique & biologie moléculaire [F05] [Sciences du vivant], Molecular Biology, Quantitative Methods (q-bio.QM), Systems Biology, Multidisciplinary, general & others [C99] [Engineering, computing & technology], Computational Biology, Computational modeling, Applications Notes, Computer Science Applications, Flux balance analysis, Computational Mathematics, 030104 developmental biology, Computational Theory and Mathematics, FOS: Biological sciences, Flux (metabolism), 020602 bioinformatics, Metabolic Networks and Pathways, Software
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::233eccb6c93c0a341f4f21a29ef5f5fb
http://hdl.handle.net/1887/71470 -
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المصدر: Bioinformatics
Bioinformatics, 33(11), 1741-1743. Oxford University Pressمصطلحات موضوعية: 0301 basic medicine, Statistics and Probability, Mathematical optimization, Computer science, Convex set, MathematicsofComputing_NUMERICALANALYSIS, Models, Biological, Biochemistry, Set (abstract data type), 03 medical and health sciences, 0302 clinical medicine, Humans, Molecular Biology, Systems Biology, Rounding, Quantitative Biology::Molecular Networks, Computational Biology, Sampling (statistics), Random walk, Applications Notes, Computer Science Applications, Constraint (information theory), Computational Mathematics, 030104 developmental biology, ComputingMethodologies_PATTERNRECOGNITION, Computational Theory and Mathematics, Sampling distribution, Algorithms, Metabolic Networks and Pathways, Software, 030217 neurology & neurosurgery, Curse of dimensionality
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1751636869fdf2b56dc1c851df9a18e7
https://hdl.handle.net/1887/76708 -
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المؤلفون: Bernhard O. Palsson, Jeffrey D. Orth, Ines Thiele
المصدر: Nature Biotechnology. 28:245-248
مصطلحات موضوعية: Computer science, MathematicsofComputing_NUMERICALANALYSIS, Biomedical Engineering, Metabolic network, Bioengineering, Models, Biological, Applied Microbiology and Biotechnology, Article, Software, Escherichia coli, Biomass, Fluxomics, Basis (linear algebra), business.industry, Systems Biology, Control engineering, Toolbox, Flux balance analysis, Oxygen, Metabolic network modelling, Phenotype, Flow (mathematics), Molecular Medicine, business, Metabolic Networks and Pathways, Biotechnology
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المؤلفون: Nathan D. Price, Bernhard O. Palsson, Ines Thiele
المصدر: Biophysical journal. 90(11)
مصطلحات موضوعية: 0303 health sciences, Helicobacter pylori, Computer science, Monte Carlo method, Biophysics, Regular polygon, Convex set, Metabolic network, Biophysical Theory and Modeling, Space (mathematics), Net (mathematics), Models, Biological, Loop (topology), Constraint (information theory), 03 medical and health sciences, 0302 clinical medicine, Law, Thermodynamics, Monte Carlo Method, 030217 neurology & neurosurgery, Algorithms, Genome, Bacterial, 030304 developmental biology
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المؤلفون: Ronan M. T. Fleming, Ines Thiele
المصدر: Bioinformatics. 27:142-143
مصطلحات موضوعية: Statistics and Probability, Computer science, Quantitative Biology::Tissues and Organs, Pipeline (computing), Metabolite, media_common.quotation_subject, Second law of thermodynamics, Models, Biological, Biochemistry, symbols.namesake, chemistry.chemical_compound, Statistics, Applied mathematics, Molecular Biology, Conservation of mass, media_common, Metabolism, Computer Science Applications, Flux balance analysis, Gibbs free energy, Applications Note, Computational Mathematics, Computational Theory and Mathematics, chemistry, Ionic strength, symbols, Thermodynamics, Steady state (chemistry), Algorithms, Software, Stoichiometry
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53e116f534e2f03a8fe95abf8bb66e6a
https://doi.org/10.1093/bioinformatics/btq607