المؤلفون: Pedro Carmona-Sáez, Joaquín Dopazo, Víctor González-Rumayor, Adoracion Martin-Gomez, Fatima Al-Shahrour, Gonzalo Gómez-López, Juan Antonio Villatoro-García, Maria Peña-Chilet, Julio Saez-Rodriguez, Guillermo Barturen, Marta E. Alarcón-Riquelme, Jordi Martorell-Marugán, Kevin Troulé, Adrian Garcia-Moreno, Daniel Toro-Domínguez, Raúl López-Domínguez

المساهمون: European Commission, Junta de Andalucía, Innovative Medicines Initiative, Ministerio de Economía, Industria y Competitividad (España), [Martorell-Marugán,J, López-Domínguez,R, García-Moreno,A, Toro-Domínguez,D, Villatoro-García,JA, Carmona-Sáez,P] Bioinformatics Unit, GENYO. Centre for Genomics and Oncological Research: Pfzer/University of Granada/Andalusian Regional Government, PTS Granada, Granada, Spain. [Martorell-Marugán,J, González-Rumayor,V] Atrys Health S.A., Barcelona, Spain. [Toro-Domínguez,D, Barturen,G, Alarcón-Riquelme,ME] Genetics of Complex Diseases, GENYO. Centre for Genomics and Oncological Research: Pfzer/University of Granada/Andalusian Regional Government, PTS Granada, Granada, Spain. [Villatoro-García,JA, Carmona-Sáez,P] Department of Statistics, University of Granada, Granada, Spain. [Martín-Gómez,A] Nephrology Units, AADEA: Asociación Andaluza de Enfermedades Autoinmunes, Hospital de Poniente, Almería, Spain. [Troule,K, Gómez-López,G, Al-Shahrour,F] Bioinformatics Unit, Spanish National Cancer Center, CNIO, Madrid, Spain. [Peña-Chilet,M, Dopazo,J] Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), CDCA, Hospital Virgen del Rocío, Seville, Spain. [Peña-Chilet,M, Dopazo,J] Bioinformatics in Rare Diseases (BiER), Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), FPS, Hospital Virgen del Rocio, Seville, Spain. [Peña-Chilet,M, Dopazo,J] Computational Systems Medicine, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, Seville, Spain. [Dopazo,J] INB ELIXIR es, FPS, Hospital Virgen del Rocío, Seville, Spain. [Sáez-Rodríguez,J] Joint Research Centre for Computational Biomedicine (JRC COMBINE), Faculty of Medicine, RWTH Aachen University, Aachen, Germany. [Sáez-Rodríguez,J] European Molecular Biology Laboratory-The European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridgeshire, UK. [Sáez-Rodríguez,J] Institute for Computational Biomedicine, Bioquant Heidelberg, Faculty of Medicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, Germany. [Alarcón-Riquelme,ME] Unit of Chronic Infammatory Diseases, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden., This work is partially funded by FEDER/Junta de Andalucía-Consejería de Economía y Conocimiento (Grant CV20-36723), Consejería de Salud (Grant PI‐0173‐2017) and by EU/EFPIA Innovative Medicines Initiative Joint Undertaking PRECIS‑ESADS (115565). JMM is partially funded by Ministerio de Economía, Industria y Competitividad. None of the funding bodies played any role in the design of the study and collection, analysis, and interpretation of data nor in writing the manuscript.

المصدر: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
Digibug. Repositorio Institucional de la Universidad de Granada
instname
Digital.CSIC. Repositorio Institucional del CSIC
BMC Bioinformatics
Digibug: Repositorio Institucional de la Universidad de Granada
Universidad de Granada (UGR)

مصطلحات موضوعية: Epigenomics, Databases, Factual, Computer science, computer.software_genre, Biochemistry, Phenomena and Processes::Genetic Phenomena::Genetic Processes::Gene Expression [Medical Subject Headings], Omics data, Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings], 0302 clinical medicine, Phenomena and Processes::Genetic Phenomena::Genetic Processes::DNA Methylation [Medical Subject Headings], Structural Biology, Autoimmune disease, Biology (General), Autoinmune disease, 0303 health sciences, Database, Conjunto de datos, Applied Mathematics, Pathway analysis, Base de datos, GEO, Disciplines and Occupations::Natural Science Disciplines::Biological Science Disciplines::Biology::Genetics::Genomics::Epigenomics [Medical Subject Headings], 3. Good health, Computer Science Applications, Curation, Meta‑analysis, Disciplines and Occupations::Natural Science Disciplines::Biological Science Disciplines::Biology::Computational Biology [Medical Subject Headings], Meta-analysis, Information Science::Information Science::Information Storage and Retrieval::Databases as Topic::Databases, Factual [Medical Subject Headings], DNA microarray, QH301-705.5, Phenomena and Processes::Genetic Phenomena::Genetic Processes::Gene Expression::Transcription, Genetic::Transcriptome [Medical Subject Headings], Computer applications to medicine. Medical informatics, R858-859.7, Autoimmune Diseases, 03 medical and health sciences, Enfermedades autoinmunes, Diseases::Immune System Diseases::Autoimmune Diseases [Medical Subject Headings], medicine, Humans, Differential expression, Metaanálisis, Transcriptomics, Molecular Biology, Interferon signature, 030304 developmental biology, 030203 arthritis & rheumatology, Computational Biology, Omics, medicine.disease, Epigenómica, Gene expression, computer, Expresión génica, Dataset

وصف الملف: application/pdf; application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24f928b0c2a2d06319a7a191667fe457
https://doaj.org/article/9d042e0eda33436597b7e2f20477a1c9

المؤلفون: Vladimir Benes, M. Ballinger, J. J. Jonathan, Bence Szalai, L. Mathur, C. A. Merten, M. Ryckelynck, Ramesh Utharala, Julio Saez-Rodriguez

مصطلحات موضوعية: Drug, Profiling (computer programming), Transcriptome, medicine.anatomical_structure, Computer science, media_common.quotation_subject, Cell, medicine, Drug resistance, Computational biology, ENCODE, Multiplexing, media_common

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::24f86f439ad50c10dc98d3601b11e577
https://doi.org/10.1101/2021.09.16.460212

المؤلفون: Attila Gábor, Jovan Tanevski, Julio Saez-Rodriguez, Ricardo O. Ramirez Flores, Denis Schapiro

مصطلحات موضوعية: Omics data, Spatial contextual awareness, Computer science, Scalability, Leverage (statistics), Data mining, computer.software_genre, Spatial analysis, computer, Multiplexing

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::34e02dae4cd8aa04b7d2f33cc4fdcff4
https://doi.org/10.21203/rs.3.rs-735362/v1

المؤلفون: Aurelien Dugourd, Ivan G. Costa, Ricardo O. Ramirez Flores, James Shiniti Nagai, Bence Szalai, Alberto Valdeolivas, Daniel Dimitrov, Julio Saez Rodriguez, Charlotte Boys, Dénes Türei, Hyojin Kim

مصطلحات موضوعية: Cell signaling, medicine.anatomical_structure, Text mining, Computer science, business.industry, Cell, medicine, Inference, RNA-Seq, Computational biology, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::956297ca46f37bc38f2968676bfc88d3
https://doi.org/10.21203/rs.3.rs-634687/v1

المؤلفون: Anna Niarakis, María Rodríguez Martínez, Matteo Barberis, Jonathan R. Karr, Laurence Calzone, Andreas Dräger, Claudine Chaouiya, Marc R. Birtwistle, Julio Saez-Rodriguez, Jan Hasenauer, Juilee Thakar, Tomáš Helikar

المساهمون: Laboratoire de recherche européen pour la polyarthrite rhumatoïde (GenHotel), Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay, Computational systems biology and optimization (Lifeware), Inria Saclay - Ile de France, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), M.Ba. was supported by the Systems Biology Grant of the University of Surrey. A.D. was supported by infrastructural funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), Cluster of Excellence EXC 2124 Controlling Microbes to Fight Infections. J.R.K. was supported by National Institutes of Health (NIH) [5R35GM119771]. T.H. was supported by NIH [5R35GM119770]. M.R.M. was supported by Horizon 2020 (H2020) [826121, 765158 and 813545]., Institut de Mathématiques de Marseille (I2M), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Centre National de la Recherche Scientifique (CNRS), University of Tübingen, Diane E. Kovats, Steven Leard, Nicolas Gambardella Le Novère, Libera Lo Presti

المصدر: Bioinformatics
Bioinformatics, 2021, 37 (21), pp.3702-3706. ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, Oxford University Press (OUP), 2021, 37 (21), pp.3702-3706. ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, Oxford University Press (OUP), 2021, ⟨10.1093/bioinformatics/btab229⟩
Bioinformatics, 2021, ⟨10.1093/bioinformatics/btab229⟩

مصطلحات موضوعية: Statistics and Probability, AcademicSubjects/SCI01060, Exploit, Computer science, Computational Modelling, SysMod, biological systems, computer.software_genre, Biochemistry, GeneralLiterature_MISCELLANEOUS, Ismb 2021, Data-driven, 03 medical and health sciences, 0302 clinical medicine, data-driven computational modelling, Molecular Biology, Multi-scale modelling, 030304 developmental biology, 0303 health sciences, Computational model, Data-driven modelling, Intelligent decision support system, COVID-19, Conference, Online forum, Special Interest Group, Data science, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Computer Science Applications, Computational Mathematics, [SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics, Computational Theory and Mathematics, ECCB, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], ISMB, computer, 030217 neurology & neurosurgery, Data integration

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f4c891887fb4c5600ca02ba3e2a0467
https://hal.science/hal-03515692

المؤلفون: Ivan G. Costa, Aurelien Dugourd, Alberto Valdeolivas, Hyojin Kim, Julio Saez-Rodriguez, Bence Szalai, James Shiniti Nagai, Ricardo O. Ramirez Flores, Dénes Türei, Daniel Dimitrov, Charlotte Boys

المصدر: bioRxiv

مصطلحات موضوعية: Resource (project management), Computer science, Single cell transcriptomics, Benchmark (computing), Inference, Data mining, computer.software_genre, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::397685e1d50c46cedd451694bd80d3a9
https://doi.org/10.1101/2021.05.21.445160

المؤلفون: Adrien Rougny, Alexander Mazein, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider, Jonathan R. Karr

المصدر: Briefings in Bioinformatics

مصطلحات موضوعية: Databases, Factual, AcademicSubjects/SCI01060, MAP Kinase Signaling System, Computer science, Systems biology, Complex system, process description, compatibility, Reuse, Models, Biological, Modularity, 03 medical and health sciences, 0302 clinical medicine, Composability, Neoplasms, Data Mining, Humans, composability, Phosphorylation, Representation (mathematics), Molecular Biology, modularity, Method Review, 030304 developmental biology, Reusability, Internet, 0303 health sciences, business.industry, Computational Biology, Reproducibility of Results, systems biology, Work in process, quality verification, Signalling, 030220 oncology & carcinogenesis, ras Proteins, reusability, raf Kinases, Software engineering, business, Information Systems

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2497ae460078174759333f42d3efdbfb
https://doi.org/10.1093/bib/bbab103

المؤلفون: Alice Driessen, Jovan Tanevski, Verena Chung, Baosen Guo, Marco Tognetti, Wencai Cao, Julio Saez-Rodriguez, He Shen, Bernd Bodenmiller, Thomas Yu, Attila Gábor

مصطلحات موضوعية: Cell signaling, medicine.anatomical_structure, Breast cancer cell line, Computer science, Cell, Time course, medicine, Mass cytometry, Replicate, Computational biology, Signal transduction, Cellular level

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::62b658b3ff7d9135da5996a42e49712d
https://doi.org/10.1101/2021.03.23.436603

المؤلفون: Enio Gjerga, Aurelien Dugourd, Julio Saez-Rodriguez, Abel Sousa, Luis Tobalina

المصدر: Journal of proteome research. 20(4)

مصطلحات موضوعية: 0301 basic medicine, 030102 biochemistry & molecular biology, Linear programming, Proteome, Computer science, SIGNAL (programming language), Phosphotransferases, Scale (descriptive set theory), Context (language use), General Chemistry, computer.software_genre, Biochemistry, Models, Biological, Mass Spectrometry, Set (abstract data type), 03 medical and health sciences, 030104 developmental biology, Relevance (information retrieval), Data mining, Integer programming, computer, Integer (computer science), Signal Transduction

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c092e386612c4d6a143806541887ba30
https://pubmed.ncbi.nlm.nih.gov/33682416

المؤلفون: Isabel Moreno-Indias, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adilovic, Onder Aydemir, Burcu Bakir-Gungor, Enrique Carrillo-de Santa Pau, Domenica D’Elia, Mahesh S. Desai, Laurent Falquet, Aycan Gundogdu, Karel Hron, Thomas Klammsteiner, Marta B. Lopes, Laura Judith Marcos-Zambrano, Cláudia Marques, Michael Mason, Patrick May, Lejla Pašić, Gianvito Pio, Sándor Pongor, Vasilis J. Promponas, Piotr Przymus, Julio Saez-Rodriguez, Alexia Sampri, Rajesh Shigdel, Blaz Stres, Ramona Suharoschi, Jaak Truu, Ciprian-Octavian Truică, Baiba Vilne, Dimitrios Vlachakis, Ercument Yilmaz, Georg Zeller, Aldert L. Zomer, David Gómez-Cabrero, Marcus J. Claesson

المساهمون: Epidemiology, AGÜ, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü, Bakir-Gungor, Burcu, Klinische infectiologie en microb. lab., dI&I I&I-4, NOVALincs, NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)

المصدر: ML4Microbiome 2021, ' Statistical and Machine Learning Techniques in Human Microbiome Studies : Contemporary Challenges and Solutions ', Frontiers in Microbiology, vol. 12, 635781 . https://doi.org/10.3389/fmicb.2021.635781
Frontiers in Microbiology, 12:635781. Frontiers Media S.A.
Frontiers in Microbiology, 12. Frontiers Media S.A.
Frontiers in Microbiology, Vol 12 (2021)
Frontiers in Microbiology
Frontiers in microbiology 12 (2021): 9–1. doi:10.3389/fmicb.2021.635781
info:cnr-pdr/source/autori:Isabel Moreno-Indias1,2*, Leo Lahti3, Miroslava Nedyalkova4, Ilze Elbere5, Gennady Roshchupkin6, Muhamed Adilovic7, Onder Aydemir8, Burcu Bakir-Gungor9, Enrique Carrillo-de Santa Pau10, Domenica D'Elia11, Mahesh S. Desai12,13, Laurent Falquet14,15, Aycan Gundogdu16,17, Karel Hron18, Thomas Klammsteiner19, Marta B. Lopes20,21, Laura Judith Marcos-Zambrano10, Cláudia Marques22, Michael Mason23, Patrick May24, Lejla Pa?i?25, Gianvito Pio26, Sándor Pongor27, Vasilis J. Promponas28, Piotr Przymus29, Julio Saez-Rodriguez30, Alexia Sampri31, Rajesh Shigdel32, Blaz Stres33,34,35, Ramona Suharoschi36, Jaak Truu37, Ciprian-Octavian Truic?38, Baiba Vilne39, Dimitrios Vlachakis40, Ercument Yilmaz41, Georg Zeller42, Aldert L. Zomer43, David Gómez-Cabrero44 and Marcus J. Claesson45 on behalf of ML4Microbiome/titolo:Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions/doi:10.3389%2Ffmicb.2021.635781/rivista:Frontiers in microbiology/anno:2021/pagina_da:9/pagina_a:1/intervallo_pagine:9–1/volume:12
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP

مصطلحات موضوعية: Microbiology (medical), Standardization, Computer science, lcsh:QR1-502, microbiome, Variation (game tree), Machine learning, computer.software_genre, Microbiology, lcsh:Microbiology, 03 medical and health sciences, 0302 clinical medicine, ML4Microbiome, Microbiome, Biomedicine, 030304 developmental biology, 0303 health sciences, Data processing, medical applications, business.industry, Human microbiome, health, bioinformatics, Benchmarking, personalized medicine, machine learning, biomarker identification, Perspective, Artificial intelligence, Personalized medicine, business, computer, 030217 neurology & neurosurgery

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::630282fc1cdfbf74fee209953be4bf91
https://findresearcher.sdu.dk:8443/ws/files/180858097/fmicb_12_635781.pdf