المؤلفون: Yuan L; Department of Biology and Biological Engineering, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden.; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden., Lu H; School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 200240 Shanghai, China., Li F; Department of Biology and Biological Engineering, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden., Nielsen J; Department of Biology and Biological Engineering, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden.; BioInnovation Institute, Ole Måløes Vej 3 DK-2200 Copenhagen, Denmark., Kerkhoven EJ; Department of Biology and Biological Engineering, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden.; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, Kemivägen 10, SE-412 96 Gothenburg, Sweden.

المصدر: Briefings in bioinformatics [Brief Bioinform] 2023 Mar 19; Vol. 24 (2).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Genomics*, Phylogeny ; Genome ; Evolution, Molecular

المؤلفون: Matlock W; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Lipworth S; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Oxford University Hospitals NHS Foundation Trust, Oxford, UK., Constantinides B; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK., Peto TEA; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Oxford University Hospitals NHS Foundation Trust, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford, UK., Walker AS; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford, UK., Crook D; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Oxford University Hospitals NHS Foundation Trust, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.; NIHR Oxford Biomedical Research Centre, Oxford, UK., Hopkins S; National Infection Service, Public Health England, Colindale, London, UK., Shaw LP; Department of Zoology, University of Oxford, Oxford, UK., Stoesser N; Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Oxford University Hospitals NHS Foundation Trust, Oxford, UK.; NIHR Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.

المصدر: Microbial genomics [Microb Genom] 2021 Sep; Vol. 7 (9).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Genomics*, Klebsiella pneumoniae/*genetics , beta-Lactamases/*genetics, Bacterial Proteins/genetics ; Computational Biology ; Interspersed Repetitive Sequences ; Klebsiella Infections/microbiology ; Plasmids

المؤلفون: Redondo-Salvo S; Instituto de Biomedicina y Biotecnología de Cantabria (IBBTEC), Universidad de Cantabria-CSIC, Santander, Spain., Bartomeus-Peñalver R; Instituto de Biomedicina y Biotecnología de Cantabria (IBBTEC), Universidad de Cantabria-CSIC, Santander, Spain., Vielva L; Departamento de Ingeniería de las Comunicaciones, Universidad de Cantabria, Santander, Spain., Tagg KA; Centers for Disease Control and Prevention, Atlanta, USA.; WDS, Inc., Atlanta, USA., Webb HE; Centers for Disease Control and Prevention, Atlanta, USA.; WDS, Inc., Atlanta, USA., Fernández-López R; Instituto de Biomedicina y Biotecnología de Cantabria (IBBTEC), Universidad de Cantabria-CSIC, Santander, Spain., de la Cruz F; Instituto de Biomedicina y Biotecnología de Cantabria (IBBTEC), Universidad de Cantabria-CSIC, Santander, Spain. delacruz@unican.es.

المصدر: BMC bioinformatics [BMC Bioinformatics] 2021 Jul 31; Vol. 22 (1), pp. 390. Date of Electronic Publication: 2021 Jul 31.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Genomics*, Drug Resistance, Microbial ; Plasmids/genetics ; Virulence Factors

المؤلفون: Kloub L; Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA., Gosselin S; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Fullmer M; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; Bioinformatics Institute, School of Biological Sciences, The University of Auckland, Auckland, New Zealand., Graf J; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; The Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Gogarten JP; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.; The Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA., Bansal MS; Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA.; The Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.

المصدر: Molecular biology and evolution [Mol Biol Evol] 2021 May 19; Vol. 38 (6), pp. 2639-2659.

نوع المنشور: Evaluation Study; Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Software*, Aeromonas/*genetics , Genomics/*methods

المؤلفون: Ocaña-Pallarès E; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain. ed3716@gmail.com.; Department of Biological Physics, Eötvös Lorand University, Budapest, Hungary. ed3716@gmail.com., Williams TA; School of Biological Sciences, University of Bristol, Bristol, UK., López-Escardó D; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.; Ecology of Marine Microbes, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain., Arroyo AS; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain., Pathmanathan JS; Equipe AIRE, UMR 7138, Laboratoire Evolution Paris-Seine, Université Pierre et Marie Curie, Paris, France., Bapteste E; Institut de Systématique, Evolution, Biodiversité (ISYEB), Sorbonne Université, CNRS, Museum National d'Histoire Naturelle, EPHE, Université des Antilles, Paris, France., Tikhonenkov DV; Laboratory of Microbiology, Papanin Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Russia.; AquaBioSafe Laboratory, University of Tyumen, Tyumen, Russia., Keeling PJ; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada., Szöllősi GJ; Department of Biological Physics, Eötvös Lorand University, Budapest, Hungary.; MTA-ELTE 'Lendület' Evolutionary Genomics Research Group, Budapest, Hungary.; Institute of Evolution, Center for Ecological Research, Budapest, Hungary., Ruiz-Trillo I; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Barcelona, Spain. inaki.ruiz@ibe.upf-csic.es.; Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona (UB), Barcelona, Spain. inaki.ruiz@ibe.upf-csic.es.; ICREA, Barcelona, Spain. inaki.ruiz@ibe.upf-csic.es.

المصدر: Nature [Nature] 2022 Sep; Vol. 609 (7928), pp. 747-753. Date of Electronic Publication: 2022 Aug 24.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Fungi*/genetics , Genome*/genetics , Genomics* , Phylogeny*, Animals ; Gene Transfer, Horizontal ; Genes ; Genome, Fungal/genetics ; Metabolism/genetics

المؤلفون: Sánchez-Soto D; Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, Loja 110108, Ecuador., Agüero-Chapin G; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal., Armijos-Jaramillo V; Grupo de Bio-Quimioinformática & Carrera de Ingeniería en Biotecnología, Facultad de Ingeniería y Ciencias Agropecuarias, Universidad de Las Américas, Quito EC170125, Ecuador., Perez-Castillo Y; Grupo de Bio-Quimioinformática & Escuela de Ciencias Físicas y Matemáticas, Universidad de Las Américas, Quito EC170125, Ecuador., Tejera E; Grupo de Bio-Quimioinformática & Carrera de Ingeniería en Biotecnología, Facultad de Ingeniería y Ciencias Agropecuarias, Universidad de Las Américas, Quito EC170125, Ecuador., Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal., Sánchez-Rodríguez A; Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, Loja 110108, Ecuador.

المصدر: Genes [Genes (Basel)] 2020 Jul 07; Vol. 11 (7). Date of Electronic Publication: 2020 Jul 07.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal* , Genome, Archaeal* , Genome, Bacterial* , Software*, Genomics/*methods, Gammaproteobacteria/classification ; Gammaproteobacteria/genetics ; Phylogeny ; Support Vector Machine

SCR Organism: Rhodanobacter denitrificans

المؤلفون: Wang M; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Zhu H; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Kong Z; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Li T; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Ma L; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Liu D; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China., Shen Q; Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers, Nanjing Agricultural University, Nanjing 210095, China.

المصدر: International journal of molecular sciences [Int J Mol Sci] 2020 May 11; Vol. 21 (9). Date of Electronic Publication: 2020 May 11.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

مواضيع طبية MeSH: Gene Transfer, Horizontal*, Composting/*methods , Genome, Bacterial/*genetics , Genomics/*methods , Geobacillus/*genetics, Agriculture/methods ; Biotechnology/methods ; Evolution, Molecular ; Genes, Bacterial/genetics ; Geobacillus/classification ; Phylogeny ; Species Specificity

المؤلفون: Delaye L; Departamento de Ingeniería Genética, CINVESTAV Irapuato, Irapuato, Guanajuato, México., Vargas C; Institute of Integrative Systems Biology, University of València and CSIC, València, Spain., Latorre A; Institute of Integrative Systems Biology, University of València and CSIC, València, Spain.; Joint Unit in Genomics and Health, FISABIO-Public Health - I2Sysbio, University of Valencia and CSIC, València, Spain.; CIBER in Epidemiology and Public Health, Madrid, Spain., Moya A; Institute of Integrative Systems Biology, University of València and CSIC, València, Spain. andres.moya@uv.es.; Joint Unit in Genomics and Health, FISABIO-Public Health - I2Sysbio, University of Valencia and CSIC, València, Spain. andres.moya@uv.es.; CIBER in Epidemiology and Public Health, Madrid, Spain. andres.moya@uv.es.

المصدر: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2020; Vol. 2075, pp. 355-369.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology*/methods , Gene Transfer, Horizontal* , Genome, Bacterial* , Genomics*/methods , Software*, Databases, Genetic ; Evolution, Molecular ; Phylogeny ; Web Browser

المؤلفون: Du H, Ong YS, Knittel M, Mawhorter R, Liu N, Gross G, Tojo R, Libeskind-Hadas R, Wu YC

المصدر: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2021 Nov-Dec; Vol. 18 (6), pp. 2144-2156. Date of Electronic Publication: 2021 Dec 08.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms* , Models, Genetic* , Phylogeny*, Gene Duplication/*genetics , Genomics/*methods, Gene Transfer, Horizontal/genetics ; Genes, Fungal/genetics

المؤلفون: Yoshida S; Nara Institute of Science and Technology, Grad. School Sci. Tech., Ikoma, Nara, Japan; JST, PRESTO, Japan. Electronic address: satokoy@bs.naist.jp., Kee YJ; Nara Institute of Science and Technology, Grad. School Sci. Tech., Ikoma, Nara, Japan.

المصدر: Current opinion in biotechnology [Curr Opin Biotechnol] 2021 Aug; Vol. 70, pp. 248-254. Date of Electronic Publication: 2021 Jul 06.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Review

بيانات الدورية: Publisher: Elsevier Country of Publication: England NLM ID: 9100492 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0429 (Electronic) Linking ISSN: 09581669 NLM ISO Abbreviation: Curr Opin Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Genomics* , Plants*/genetics, Biological Evolution ; Gene Transfer, Horizontal ; Symbiosis