المؤلفون: Gao GF; Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA; The University of Texas Southwestern Medical School, Dallas, TX 75390, USA., Parker JS; Department of Genetics, Lineberger Comprehensive Cancer Center, the University of North Carolin at Chapel Hill, Chapel Hill, NC 27599, USA., Reynolds SM; Institute for Systems Biology, Seattle, WA 98109, USA., Silva TC; Center for Bioinformatics and Functional Genomics, Department of Biomedical Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, SP 14.040-905, Brazil., Wang LB; Department of Medicine, Washington University in St Louis, Saint Louis, MO 63108, USA; McDonnell Genome Institute, Washington University in St Louis, Saint Louis, MO 63108, USA; Siteman Cancer Center, Washington University in St Louis, Saint Louis, MO 63108, USA., Zhou W; Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA., Akbani R; Department of Bioinformatics and Computational Biology, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Bailey M; Department of Medicine, Washington University in St Louis, Saint Louis, MO 63108, USA; McDonnell Genome Institute, Washington University in St Louis, Saint Louis, MO 63108, USA; Siteman Cancer Center, Washington University in St Louis, Saint Louis, MO 63108, USA., Balu S; Lineberger Comprehensive Cancer Center, Bioinformatics Core, the University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA., Berman BP; Center for Bioinformatics and Functional Genomics, Department of Biomedical Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Faculty of Medicine, Department of Developmental Biology and Cancer Research, the Hebrew University of Jerusalem, Jerusalem 91120, Israel., Brooks D; Canada's Michael Smith Genome Sciences Centre, Vancouver, BC V5Z 4S6, Canada., Chen H; Department of Bioinformatics and Computational Biology, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Graduate Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA., Cherniack AD; Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Demchok JA; National Cancer Institute, Bethesda, MD 20892, USA., Ding L; Department of Medicine, Washington University in St Louis, Saint Louis, MO 63108, USA; McDonnell Genome Institute, Washington University in St Louis, Saint Louis, MO 63108, USA; Siteman Cancer Center, Washington University in St Louis, Saint Louis, MO 63108, USA., Felau I; National Cancer Institute, Bethesda, MD 20892, USA., Gaheen S; Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., Frederick, MD 21702, USA., Gerhard DS; National Cancer Institute, Bethesda, MD 20892, USA., Heiman DI; Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA., Hernandez KM; Department of Pediatrics, the University of Chicago, Chicago, IL 60637, USA; Center for Research Informatics, the University of Chicago, Chicago, IL 60637, USA., Hoadley KA; Department of Genetics, Lineberger Comprehensive Cancer Center, the University of North Carolin at Chapel Hill, Chapel Hill, NC 27599, USA., Jayasinghe R; Department of Medicine, Washington University in St Louis, Saint Louis, MO 63108, USA., Kemal A; National Cancer Institute, Bethesda, MD 20892, USA., Knijnenburg TA; Institute for Systems Biology, Seattle, WA 98109, USA., Laird PW; Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA., Mensah MKA; National Cancer Institute, Bethesda, MD 20892, USA., Mungall AJ; Canada's Michael Smith Genome Sciences Centre, Vancouver, BC V5Z 4S6, Canada., Robertson AG; Canada's Michael Smith Genome Sciences Centre, Vancouver, BC V5Z 4S6, Canada., Shen H; Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA., Tarnuzzer R; National Cancer Institute, Bethesda, MD 20892, USA., Wang Z; National Cancer Institute, Bethesda, MD 20892, USA., Wyczalkowski M; Department of Medicine, Washington University in St Louis, Saint Louis, MO 63108, USA; McDonnell Genome Institute, Washington University in St Louis, Saint Louis, MO 63108, USA; Siteman Cancer Center, Washington University in St Louis, Saint Louis, MO 63108, USA., Yang L; National Cancer Institute, Bethesda, MD 20892, USA., Zenklusen JC; National Cancer Institute, Bethesda, MD 20892, USA., Zhang Z; Center for Translational Data Science, the University of Chicago, Chicago, IL 60615, USA., Liang H; Department of Bioinformatics and Computational Biology, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Graduate Program in Quantitative and Computational Biosciences, Baylor College of Medicine, Houston, TX 77030, USA; Department of Systems Biology, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address: hliang1@mdanderson.org., Noble MS; Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA. Electronic address: mnoble@cogenimmune.com.

مؤلفون مشاركون: Genomic Data Analysis Network

المصدر: Cell systems [Cell Syst] 2019 Jul 24; Vol. 9 (1), pp. 24-34.e10.

نوع المنشور: Comparative Study; Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101656080 Publication Model: Print Cited Medium: Internet ISSN: 2405-4720 (Electronic) Linking ISSN: 24054712 NLM ISO Abbreviation: Cell Syst Subsets: MEDLINE

مواضيع طبية MeSH: Software*, Genome/*genetics , MicroRNAs/*genetics , Neoplasms/*genetics, Controlled Before-After Studies ; Datasets as Topic ; Gene Expression Profiling ; Genome, Human ; Genomics ; Health Information Exchange ; High-Throughput Nucleotide Sequencing ; Humans ; Molecular Sequence Annotation ; Reproducibility of Results

المؤلفون: Thorsson V; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: vesteinn.thorsson@systemsbiology.org., Gibbs DL; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA., Brown SD; Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada., Wolf D; University of California, San Francisco, Box 0808, 2340 Sutter Street, S433, San Francisco, CA 94115, USA., Bortone DS; Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA., Ou Yang TH; Department of Systems Biology and Department of Electrical Engineering, Columbia University, New York, NY 10027, USA., Porta-Pardo E; Barcelona Supercomputing Centre, c/Jordi Girona, 29, 08034 Barcelona, Spain; SBP Medical Discovery Institute, La Jolla, CA 92037, USA., Gao GF; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA., Plaisier CL; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA; School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 85281, USA., Eddy JA; Sage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA., Ziv E; Department of Medicine, Institute for Human Genetics, Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, 1450 3rd St, San Francisco, CA 94143, USA., Culhane AC; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Paull EO; Irving Cancer Research Center, Room 913,1130 St. Nicholas Avenue, New York, NY 10032, USA., Sivakumar IKA; Department of Computer Science, Institute for Computational Medicine; Johns Hopkins University, Baltimore, MD 21218, USA., Gentles AJ; Departments of Medicine and Biomedical Data Science, Stanford University, Stanford, CA 94305, USA., Malhotra R; Seven Bridges Genomics, Cambridge, MA 02142, USA., Farshidfar F; Department of Oncology, University of Calgary, Calgary, AB T2N 4N1, Canada., Colaprico A; Universite libre de Bruxelles (ULB), Computer Science Department, Faculty of Sciences, Boulevard du Triomphe - CP212, 1050 Bruxelles, Belgium., Parker JS; Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA., Mose LE; Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA., Vo NS; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Liu J; Chan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA., Liu Y; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Rader J; Medical College of Wisconsin, 9200 Wisconsin Avenue, Milwaukee, WI 53226 USA., Dhankani V; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA., Reynolds SM; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA., Bowlby R; Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada., Califano A; Irving Cancer Research Center, Room 913,1130 St. Nicholas Avenue, New York, NY 10032, USA., Cherniack AD; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02142, USA., Anastassiou D; Department of Systems Biology and Department of Electrical Engineering, Columbia University, New York, NY 10027, USA., Bedognetti D; Division of Translational Medicine, Research Branch, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar., Mokrab Y; Division of Translational Medicine, Research Branch, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar., Newman AM; Institute for Stem Cell Biology and Regenerative Medicine and Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA., Rao A; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Chen K; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Krasnitz A; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA., Hu H; Chan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA., Malta TM; Department of Neurosurgery, Henry Ford Hospital, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of São Paulo, São Paulo, Brazil., Noushmehr H; Department of Neurosurgery, Henry Ford Hospital, Detroit, MI 48202, USA; Department of Genetics, Ribeirao Preto Medical School, University of São Paulo, São Paulo, Brazil., Pedamallu CS; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Bullman S; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Ojesina AI; University of Alabama at Birmingham, Birmingham, AL 35294, USA., Lamb A; Sage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA., Zhou W; Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA., Shen H; Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, USA., Choueiri TK; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Weinstein JN; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Guinney J; Sage Bionetworks, 2901 Third Ave, Suite 330, Seattle, WA 98121, USA., Saltz J; Department of Biomedical Informatics, Stony Brook Medicine, 100 Nicolls Rd, Stony Brook, NY 11794, USA., Holt RA; Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, BC V5Z 4S6, Canada., Rabkin CS; Division of Cancer Epidemiology and Genetics, National Cancer Institute, 9609 Medical Center Dr., Bethesda, MD 20892, USA., Lazar AJ; Departments of Pathology, Genomics Medicine and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd-Unit 85, Houston, TX 77030, USA., Serody JS; Department of Medicine and Microbiology and Lineberger Comprehensive Cancer Center, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA., Demicco EG; Mount Sinai Hospital, Department of Pathology and Laboratory Medicine, 600 University Ave., Toronto, ON M5G 1X5, Canada., Disis ML; UW Medicine Cancer Vaccine Institute, 850 Republican Street, Brotman Building, 2nd Floor, Room 221, Box 358050, University of Washington, Seattle, WA 98109-4714, USA., Vincent BG; Lineberger Comprehensive Cancer Center, Curriculum in Bioinformatics and Computational Biology, University of North Carolina, 125 Mason Farm Road, Chapel Hill, NC 27599-7295, USA. Electronic address: benjamin.vincent@unchealth.unc.edu., Shmulevich I; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA. Electronic address: ilya.shmulevich@systemsbiology.org.

مؤلفون مشاركون: Cancer Genome Atlas Research Network

المصدر: Immunity [Immunity] 2018 Apr 17; Vol. 48 (4), pp. 812-830.e14. Date of Electronic Publication: 2018 Apr 05.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 9432918 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4180 (Electronic) Linking ISSN: 10747613 NLM ISO Abbreviation: Immunity Subsets: MEDLINE

مواضيع طبية MeSH: Neoplasms*/classification , Neoplasms*/genetics , Neoplasms*/immunology, Genomics/*methods, Adolescent ; Adult ; Aged ; Aged, 80 and over ; Child ; Female ; Humans ; Interferon-gamma/genetics ; Interferon-gamma/immunology ; Macrophages/immunology ; Male ; Middle Aged ; Prognosis ; Th1-Th2 Balance/physiology ; Transforming Growth Factor beta/genetics ; Transforming Growth Factor beta/immunology ; Wound Healing/genetics ; Wound Healing/immunology ; Young Adult

المؤلفون: Jayasinghe RG; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Cao S; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Gao Q; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Wendl MC; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Mathematics, Washington University in St. Louis, St. Louis, MO 63130, USA., Vo NS; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Reynolds SM; Institute for Systems Biology, Seattle, WA 98109, USA., Zhao Y; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Climente-González H; Institut Curie, 75248 Paris Cedex, France; MINES ParisTech, PSL-Research University, CBIO-Centre for Computational Biology, 77300 Fontainebleau, France; INSERM U900, 75248 Paris Cedex, France., Chai S; Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Curriculum in Bioinformatics and Computational Biology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Wang F; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Varghese R; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Division of Nephrology, Washington University in St. Louis, St. Louis, MO 63110, USA., Huang M; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Liang WW; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Wyczalkowski MA; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Sengupta S; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA., Li Z; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Institute for Systems Genetics, New York University School of Medicine, New York, NY 10016, USA., Payne SH; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Fenyö D; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA; Institute for Systems Genetics, New York University School of Medicine, New York, NY 10016, USA., Miner JH; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Division of Nephrology, Washington University in St. Louis, St. Louis, MO 63110, USA., Walter MJ; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA., Vincent B; Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Curriculum in Bioinformatics and Computational Biology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Eyras E; Catalan Institution of Research and Advanced Studies (ICREA), 08010 Barcelona, Spain; Computational RNA Biology Group, Pompeu Fabra University (UPF), 08003 Barcelona, Spain., Chen K; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Shmulevich I; Institute for Systems Biology, Seattle, WA 98109, USA. Electronic address: ilya.shmulevich@systemsbiology.org., Chen F; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Division of Nephrology, Washington University in St. Louis, St. Louis, MO 63110, USA. Electronic address: fchen@wustl.edu., Ding L; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Division of Oncology, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA. Electronic address: lding@wustl.edu.

مؤلفون مشاركون: Cancer Genome Atlas Research Network

المصدر: Cell reports [Cell Rep] 2018 Apr 03; Vol. 23 (1), pp. 270-281.e3.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

مواضيع طبية MeSH: Mutation* , RNA Splice Sites*, Neoplasms/*genetics, BRCA1 Protein/genetics ; GATA3 Transcription Factor/genetics ; HEK293 Cells ; Humans ; Poly (ADP-Ribose) Polymerase-1/genetics ; Programmed Cell Death 1 Receptor/genetics ; Tumor Suppressor Protein p53/genetics ; X-linked Nuclear Protein/genetics

المؤلفون: Gao Q; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Liang WW; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Foltz SM; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Mutharasu G; Institute of Signal Processing, Tampere University of Technology, 33101, Tampere, Finland., Jayasinghe RG; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Cao S; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Liao WW; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Reynolds SM; Institute for Systems Biology, Seattle, WA 98109, USA., Wyczalkowski MA; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Yao L; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Yu L; H3 Biomedicine, Inc., Cambridge, MA 02139, USA., Sun SQ; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA., Chen K; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77230, USA., Lazar AJ; Departments of Pathology, Genomic Medicine, and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77230, USA., Fields RC; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Surgery, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA., Wendl MC; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Department of Mathematics, Washington University in St. Louis, St. Louis, MO 63130, USA., Van Tine BA; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA., Vij R; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA., Chen F; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA., Nykter M; Institute for Biosciences and Medical Technology, University of Tampere, 33520 Tampere, Finland., Shmulevich I; Institute for Systems Biology, Seattle, WA 98109, USA., Ding L; Department of Medicine, Washington University in St. Louis, St. Louis, MO 63110, USA; McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA; Department of Genetics, Washington University in St. Louis, St. Louis, MO 63110, USA; Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63110, USA. Electronic address: lding@wustl.edu.

مؤلفون مشاركون: Fusion Analysis Working Group, Cancer Genome Atlas Research Network

المصدر: Cell reports [Cell Rep] 2018 Apr 03; Vol. 23 (1), pp. 227-238.e3.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

مواضيع طبية MeSH: Oncogene Fusion*, Antineoplastic Agents/*pharmacology , Carcinogenesis/*genetics , Neoplasms/*genetics, Antineoplastic Agents/therapeutic use ; Carcinogenesis/drug effects ; Carcinogenesis/metabolism ; Cell Line, Tumor ; Humans ; Molecular Targeted Therapy/methods ; Neoplasms/drug therapy ; Neoplasms/pathology ; Oncogene Proteins, Fusion/chemistry ; Oncogene Proteins, Fusion/genetics ; Oncogene Proteins, Fusion/metabolism

المؤلفون: Reynolds SM; Institute for Systems Biology, Seattle, Washington. sreynolds@systemsbiology.org ilya.shmulevich@systemsbiology.org., Miller M; Institute for Systems Biology, Seattle, Washington., Lee P; Institute for Systems Biology, Seattle, Washington., Leinonen K; Institute for Systems Biology, Seattle, Washington., Paquette SM; Institute for Systems Biology, Seattle, Washington., Rodebaugh Z; Institute for Systems Biology, Seattle, Washington., Hahn A; Institute for Systems Biology, Seattle, Washington., Gibbs DL; Institute for Systems Biology, Seattle, Washington., Slagel J; Institute for Systems Biology, Seattle, Washington., Longabaugh WJ; Institute for Systems Biology, Seattle, Washington., Dhankani V; Institute for Systems Biology, Seattle, Washington., Reyes M; CSRA Inc., Falls Church, Virginia., Pihl T; CSRA Inc., Falls Church, Virginia., Backus M; CSRA Inc., Falls Church, Virginia., Bookman M; Google, Mountain View, California.; Verily Life Sciences, South San Francisco, California., Deflaux N; Google, Mountain View, California.; Verily Life Sciences, South San Francisco, California., Bingham J; Google, Mountain View, California.; Verily Life Sciences, South San Francisco, California., Pot D; CSRA Inc., Falls Church, Virginia., Shmulevich I; Institute for Systems Biology, Seattle, Washington. sreynolds@systemsbiology.org ilya.shmulevich@systemsbiology.org.

المصدر: Cancer research [Cancer Res] 2017 Nov 01; Vol. 77 (21), pp. e7-e10.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 2984705R Publication Model: Print Cited Medium: Internet ISSN: 1538-7445 (Electronic) Linking ISSN: 00085472 NLM ISO Abbreviation: Cancer Res Subsets: MEDLINE

مواضيع طبية MeSH: Cloud Computing* , Computational Biology* , Genomics*, Neoplasms/*genetics, Datasets as Topic ; Genome, Human ; Humans ; Internet ; National Cancer Institute (U.S.) ; Research/trends ; Software ; United States

المؤلفون: Gao, Galen F., Parker, Joel S., Reynolds, Sheila M., Silva, Tiago C., Wang, Liang-Bo, Zhou, Wanding, Akbani, Rehan, Bailey, Matthew, Balu, Saianand, Berman, Benjamin P., Brooks, Denise, Chen, Hu, Cherniack, Andrew D., Demchok, John A., Ding, Li, Felau, Ina, Gaheen, Sharon, Gerhard, Daniela S., Heiman, David I., Hernandez, Kyle M., Hoadley, Katherine A., Jayasinghe, Reyka, Kemal, Anab, Knijnenburg, Theo A., Laird, Peter W., Mensah, Michael K.A., Mungall, Andrew J., Gordon Robertson, A., Shen, Hui, Tarnuzzer, Roy, Wang, Zhining, Wyczalkowski, Matthew, Yang, Liming, Zenklusen, Jean C., Zhang, Zhenyu, Liang, Han, Noble, Michael S.

المصدر: Cell Syst

مصطلحات موضوعية: Genome, Health Information Exchange, Genome, Human, Gene Expression Profiling, Datasets as Topic, High-Throughput Nucleotide Sequencing, Reproducibility of Results, Molecular Sequence Annotation, Genomics, Article, MicroRNAs, Controlled Before-After Studies, Neoplasms, Humans, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::b9dd9ca47405dfbd6dec4940c876310d
https://europepmc.org/articles/PMC6707074/

المؤلفون: Thorsson, Vésteinn, Gibbs, David L, Brown, Scott D, Wolf, Denise, Bortone, Dante S, Ou Yang, Tai-Hsien, Porta-Pardo, Eduard, Gao, Galen F, Plaisier, Christopher L, Eddy, James A, Ziv, Elad, Culhane, Aedin C, Paull, Evan O, Sivakumar, IK Ashok, Gentles, Andrew J, Malhotra, Raunaq, Farshidfar, Farshad, Colaprico, Antonio, Parker, Joel S, Mose, Lisle E, Vo, Nam Sy, Liu, Jianfang, Liu, Yuexin, Rader, Janet, Dhankani, Varsha, Reynolds, Sheila M, Bowlby, Reanne, Califano, Andrea, Cherniack, Andrew D, Anastassiou, Dimitris, Bedognetti, Davide, Mokrab, Younes, Newman, Aaron M, Rao, Arvind, Chen, Ken, Krasnitz, Alexander, Hu, Hai, Malta, Tathiane M, Noushmehr, Houtan, Pedamallu, Chandra Sekhar, Bullman, Susan, Ojesina, Akinyemi I, Lamb, Andrew, Zhou, Wanding, Shen, Hui, Choueiri, Toni K, Weinstein, John N, Guinney, Justin, Saltz, Joel, Holt, Robert A, Rabkin, Charles S, Cancer Genome Atlas Research Network, Lazar, Alexander J, Serody, Jonathan S, Demicco, Elizabeth G, Disis, Mary L, Vincent, Benjamin G, Shmulevich, Ilya

المصدر: Immunity, vol 48, iss 4

مصطلحات موضوعية: Adult, Male, Adolescent, Immunology, Cancer Genome Atlas Research Network, Interferon-gamma, Young Adult, Transforming Growth Factor beta, Neoplasms, 80 and over, immune subtypes, Genetics, Humans, tumor microenvironment, tumor immunology, Child, Th1-Th2 Balance, immuno-oncology, immunomodulatory, Aged, Cancer, Wound Healing, cancer genomics, Macrophages, Inflammatory and immune system, Genomics, Middle Aged, Prognosis, integrative network analysis, Female, immunotherapy

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od_______325::d6df7f67e9b1e715f0a207f439f81d05
https://escholarship.org/uc/item/4wd3s0b1

المؤلفون: Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Sam, Ng, Leiserson, Max D. M., Niu, Beifang, Mclellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan, Kandoth, Cyriac, Akbani, Rehan, Shen, Hui, Omberg, Larsson, Chu, Andy, Margolin, Adam A., Van'T Veer, Laura J., Lopez Bigas, Nuria, Laird, Peter W., Raphael, Benjamin J., Ding, Li, Robertson, A. Gordon, Byers, Lauren A., Mills, Gordon B., Weinstein, John N., Van Waes, Carter, Chen, Zhong, Collisson, Eric A., Benz, Christopher C, Perou, Charles M., Stuart, Joshua M., Rachel, Abbott, Scott, Abbott, Arman Aksoy, B., Kenneth, Aldape, Adrian, Ally, Samirku mar Amin, Dimitris, Anastassiou, Todd Auman, J., Baggerly, Keith A., Miruna, Balasundaram, Saianand, Balu, Baylin, Stephen B., Benz, Stephen C., Berman, Benjamin P., Brady, Bernard, Bhatt, Ami S., Inanc, Birol, Black, Aaron D., Tom, Bodenheimer, Bootwalla, Moiz S., Jay, Bowen, Ryan, Bressler, Bristow, Christopher A., Brooks, Angela N., Bradley, Broom, Elizabeth, Buda, Robert, Burton, Butterfield, Yaron S. N., Daniel, Carlin, Carter, Scott L., Casasent, Tod D., Kyle, Chang, Stephen, Chanock, Lynda, Chin, Dong Yeon Cho, Juok, Cho, Eric, Chuah, Chun, Hye Jung E., Kristian, Cibulskis, Giovanni, Ciriello, James Cle land, Melisssa, Cline, Brian, Craft, Creighton, Chad J., Ludmila, Danilova, Tanja, Davidsen, Caleb, Davis, Dees, Nathan D., Kim, Delehaunty, Demchok, John A., Noreen, Dhalla, Daniel, Dicara, Huyen, Dinh, Dobson, Jason R., Deepti, Dodda, Harshavardhan, Doddapaneni, Lawrence, Donehower, Dooling, David J., Gideon, Dresdner, Jennifer, Drummond, Andrea, Eakin, Mary, Edgerton, Eldred, Jim M., Greg, Eley, Kyle, Ellrott, Cheng, Fan, Suzanne, Fei, Ina, Felau, Scott, Frazer, Freeman, Samuel S., Jessica, Frick, Fronick, Catrina C., Ful ton, Lucinda L., Robert, Fulton, Gabriel, Stacey B., Jianjiong, Gao, Gastier Foster, Julie M., Nils, Gehlenborg, Myra, George, Gad, Getz, Richard, Gibbs, Mary, Goldman, Abel Gonzalez Perez, Benjamin, Gross, Ranabir, Guin, Preethi, Gunaratne, Angela, Hadjipanayis, Hamilton, Mark P., Hamilton, Stanley R., Leng, Han, Han, Yi, Harper, Hollie A., Psalm, Haseley, David, Haussler, Neil Hayes, D., Heiman, David I., Elena, Helman, Carmen, Helsel, Herbrich, Shelley M., Her man, James G., Toshinori, Hinoue, Carrie, Hirst, Martin, Hirst, Holt, Robert A., Hoyle, Alan P., Lisa, Iype, Anders, Jacobsen, Jeffreys, Stuart R., Jensen, Mark A., Jones, Corbin D., Jones, Steven J. M., Zhenlin, Ju, Joonil, Jung, Andre, Kahles, Ari, Kahn, Joelle Kalicki Veizer, Divya, Kalra, Krishna Latha Kanchi, Kane, David W., Hoon, Kim, Jaegil, Kim, Theo, Knijnenburg, Koboldt, Daniel C., Christie, Kovar, Roger, Kramer, Richard, Kreisberg, Raju, Kucherlapati, Marc, Ladanyi, Lander, Eric S., Larson, David E., Lawrence, Michael S., Darlene, Lee, Eunjung, Lee, Semin, Lee, William, Lee, Kjong Van Lehmann, Kalle, Leinonen, Ler aas, Kristen M., Seth, Lerner, Levine, Douglas A., Lora, Lewis, Ley, Timothy J., Haiyan I., Li, Jun, Li, Wei, Li, Han, Liang, Lichtenberg, Tara M., Jake, Lin, Ling, Lin, Pei, Lin, Wen bin Liu, Yingchun, Liu, Yuexin, Liu, Lorenzi, Philip L., Charles, Lu, Yiling, Lu, Luquette, Love lace J., Singer, Ma, Magrini, Vincent J., Mahadeshwar, Harshad S., Mardis, Elaine R., Adam, Margolin, Marra, Marco A., Michael, Mayo, Cynthia, Mcallister, Mcguire, Sean E., Mcmichael, Joshua F., James, Melott, Shaowu, Meng, Matthew, Meyerson, Mieczkowski, Piotr A., Miller, Christopher A., Miller, Martin L., Michael, Miller, Moore, Richard A., Margaret, Morgan, Donna, Morton, Mose, Lisle E., Mungall, Andrew J., Donna, Muzny, Lam, Nguyen, Noble, Michael S., Houtan, Noushmehr, Michelle, O’Laughlin, Ojesina, Akinyemi I., Tai Hsien Ou Yang, Brad, Ozenberger, Angeliki, Pantazi, Michael, Parfenov, Park, Peter J., Parker, Joel S., Evan, Paull, Chandra Sekhar Pedamallu, Todd, Pihl, Craig, Pohl, David, Pot, Alexei, Protopopov, Teresa, Przytycka, Amie Raden baugh, Ramirez, Nilsa C., Ricardo, Ramirez, Gunnar Ra, ̈ tsch, Jeffrey, Reid, Xiao jia Ren, Boris, Reva, Reynolds, Sheila M., Rhie, Suhn K., Jeffrey, Roach, Hector, Rovira, Michael, Ryan, Gordon, Saksena, Sofie, Salama, Chris, Sander, Netty, Santoso, Schein, Jacqueline E., Heather, Schmidt, Nikolaus, Schultz, Schumacher, Steven E., Jonathan, Seidman, Yasin, Senbabaoglu, Sahil, Seth, Saman tha Sharpe, Ronglai, Shen, Margi, Sheth, Yan, Shi, Ilya, Shmulevich, Silva, Grace O., Simons, Janae V., Rileen, Sinha, Payal, Sipahimalani, Smith, Scott M., Sofia, Heidi J., Artem, Sokolov, Soloway, Mathew G., Xingzhi, Song, Carrie Soug nez, Paul, Spellman, Louis, Staudt, Chip, Stewart, Petar, Stojanov, Xiaoping, Su, Onur Sumer, S., Yichao, Sun, Teresa, Swatloski, Barbara, Tabak, Angela, Tam, Donghui, Tan, Jiabin, Tang, Roy, Tarnuzzer, Taylor, Barry S., Nina, Thiessen, Ves teinn Thorsson, Timothy Triche, J. r., Van Den Berg, David J., Vandin, Fabio, Varhol, Richard J., Vaske, Charles J., Umadevi, Veluvolu, Roeland, Verhaak, Doug, Voet, Jason, Walker, Wallis, John W., Peter, Waltman, Yunhu, Wan, Min, Wang, Wenyi, Wang, Zhining, Wang, Scot, Waring, Nils, Weinhold, Weisenberger, Daniel J., Wendl, Michael C., David, Wheeler, Wilkerson, Matthew D., Wilson, Richard K., Lisa, Wise, Andrew, Wong, Chang Jiun Wu, Chia Chin Wu, Hsin Ta Wu, Junyuan, Wu, Todd, Wylie, Liu, Xi, Ruibin, Xi, Zheng, Xia, Andrew W., Xu, Yang, Da, Liming, Yang, Lixing, Yang, Yang, Yang, Jun, Yao, Rong, Yao, Kai, Ye, Ko suke Yoshihara, Yuan, Yuan, Yung, Alfred K., Travis, Zack, Dong, Zeng, Jean Claude Zenklusen, Hailei, Zhang, Jianhua, Zhang, Nianxiang, Zhang, Qunyuan, Zhang, Wei, Zhang, Wei, Zhao, Siyuan, Zheng, Jing, Zhu, Erik, Zmuda, Lihua, Zou

المصدر: Hoadley, K A, Yau, C, Wolf, D M, Cherniack, A D, Tamborero, D, Ng, S, Leiserson, M D M, Niu, B, McLellan, M D, Uzunangelov, V, Zhang, J, Kandoth, C, Akbani, R, Shen, H, Omberg, L, Chu, A, Margolin, A A, Van't Veer, L J, Lopez-Bigas, N, Laird, P W, Raphael, B J, Ding, L, Robertson, A G, Byers, L A, Mills, G B, Weinstein, J N, Van Waes, C, Chen, Z, Collisson, E A, Benz, C C, Perou, C M, Stuart, J M & Cancer Genome Atlas Research Network 2014, ' Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin ', Cell, vol. 158, no. 4, pp. 929-944 . https://doi.org/10.1016/j.cell.2014.06.049
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

مصطلحات موضوعية: Genetics and Molecular Biology (all), Cluster Analysis, Humans, Neoplasms, Transcriptome, Biochemistry, Genetics and Molecular Biology (all), Extramural, Biochemistry, Genetics and Molecular Biology(all), Cancer, Computational biology, Disease, Biology, medicine.disease, Bioinformatics, Biochemistry, General Biochemistry, Genetics and Molecular Biology, Article, 3. Good health, Molecular classification, TP63, CLUSTERS (ANÁLISE), medicine, Head and neck, Gene

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55d3033c7d0c9bd49782db5cfb6fdc9a
https://portal.findresearcher.sdu.dk/da/publications/d4264962-e084-4972-b00a-d302f8dbea8a