المؤلفون: Pardo-Palacios, Francisco J., Wang, Dingjie^{Aff2, Aff3}, Reese, Fairlie^{Aff4, Aff5}, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite^{Aff10, Aff11}, Adams, Matthew S., Balderrama-Gutierrez, Gabriela^{Aff4, Aff5}, Behera, Amit K., Gonzalez Martinez, Jose M., Hunt, Toby, Lagarde, Julien^{Aff7, Aff14}, Liang, Cindy E., Li, Haoran^{Aff2, Aff3}, Meade, Marcus Jerryd, Moraga Amador, David A., Prjibelski, Andrey D.^{Aff17, Aff18}, Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Çelik, Muhammed Hasan^{Aff4, Aff5}, Chen, Ying, Du, Mei R. M., Felton, Colette, Göke, Jonathan^{Aff21, Aff23}, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Li, Jian-Liang, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Nip, Ka Ming, Pertea, Mihaela^{Aff27, Aff28}, Ritchie, Matthew E.^{Aff22, Aff29}, Sim, Andre D., Tang, Alison D., Wan, Yuk Kei^{Aff21, Aff30}, Wang, Changqing, Wong, Brandon Y.^{Aff27, Aff28}, Yang, Chen, Barnes, If, Berry, Andrew E., Capella-Gutierrez, Salvador, Cousineau, Alyssa, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Götz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Ren, Xingjie, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Smith, Melissa Laird, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid A., Carninci, Piero^{Aff40, Aff42}, Denslow, Nancy D.^{Aff10, Aff43}, Guigó, Roderic^{Aff7, Aff44}, Hunter, Margaret E., Maehr, Rene, Shen, Yin, Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher^{Aff13, IDs41592024022983_cor81}, Frankish, Adam^{Aff9, IDs41592024022983_cor82}, Au, Kin Fai^{Aff2, Aff3, IDs41592024022983_cor83}, Sheynkman, Gloria M.^{Aff15, Aff48, Aff49, IDs41592024022983_cor84}, Mortazavi, Ali^{Aff4, Aff5, IDs41592024022983_cor85}, Conesa, Ana^{Aff1, Aff50, IDs41592024022983_cor86}, Brooks, Angela N.^{Aff6, Aff13, IDs41592024022983_cor87}

المصدر: Nature Methods: Techniques for life scientists and chemists. 21(7):1349-1363

المؤلفون: Jain, Shantanu, Bakolitsa, Constantina, Brenner, Steven E, Radivojac, Predrag, Moult, John, Repo, Susanna, Hoskins, Roger A, Andreoletti, Gaia, Barsky, Daniel, Chellapan, Ajithavalli, Chu, Hoyin, Dabbiru, Navya, Kollipara, Naveen K, Ly, Melissa, Neumann, Andrew J, Pal, Lipika R, Odell, Eric, Pandey, Gaurav, Peters-Petrulewicz, Robin C, Srinivasan, Rajgopal, Yee, Stephen F, Yeleswarapu, Sri Jyothsna, Zuhl, Maya, Adebali, Ogun, Patra, Ayoti, Beer, Michael A, Hosur, Raghavendra, Peng, Jian, Bernard, Brady M, Berry, Michael, Dong, Shengcheng, Boyle, Alan P, Adhikari, Aashish, Chen, Jingqi, Hu, Zhiqiang, Wang, Robert, Wang, Yaqiong, Miller, Maximilian, Wang, Yanran, Bromberg, Yana, Turina, Paola, Capriotti, Emidio, Han, James J, Ozturk, Kivilcim, Carter, Hannah, Babbi, Giulia, Bovo, Samuele, Di Lena, Pietro, Martelli, Pier Luigi, Savojardo, Castrense, Casadio, Rita, Cline, Melissa S, De Baets, Greet, Bonache, Sandra, Diez, Orland, Gutierrez-Enriquez, Sara, Fernandez, Alejandro, Montalban, Gemma, Ootes, Lars, Ozkan, Selen, Padilla, Natalia, Riera, Casandra, De la Cruz, Xavier, Diekhans, Mark, Huwe, Peter J, Wei, Qiong, Xu, Qifang, Dunbrack, Roland L, Gotea, Valer, Elnitski, Laura, Margolin, Gennady, Fariselli, Piero, Kulakovskiy, Ivan V, Makeev, Vsevolod J, Penzar, Dmitry D, Vorontsov, Ilya E, Favorov, Alexander V, Forman, Julia R, Hasenahuer, Marcia, Fornasari, Maria S, Parisi, Gustavo, Avsec, Ziga, Celik, Muhammed H, Thi, Yen Duong Nguyen, Gagneur, Julien, Shi, Fang-Yuan, Edwards, Matthew D, Guo, Yuchun, Tian, Kevin, Zeng, Haoyang, Gifford, David K, Goke, Jonathan, Zaucha, Jan, Gough, Julian, Ritchie, Graham RS, Frankish, Adam, Mudge, Jonathan M, Harrow, Jennifer, Young, Erin L, Yu, Yao

المصدر: Genome Biology. 25(1)

مصطلحات موضوعية: Biological Sciences, Genetics, Human Genome, Genetic Testing, 2.1 Biological and endogenous factors, Aetiology, Good Health and Well Being, Humans, Computational Biology, Mutation, Missense, Phenotype, Critical Assessment of Genome Interpretation Consortium, Environmental Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/60j7f44b

المؤلفون: Mudge, Jonathan M, Ruiz-Orera, Jorge, Prensner, John R, Brunet, Marie A, Calvet, Ferriol, Jungreis, Irwin, Gonzalez, Jose Manuel, Magrane, Michele, Martinez, Thomas F, Schulz, Jana Felicitas, Yang, Yucheng T, Albà, M Mar, Aspden, Julie L, Baranov, Pavel V, Bazzini, Ariel A, Bruford, Elspeth, Martin, Maria Jesus, Calviello, Lorenzo, Carvunis, Anne-Ruxandra, Chen, Jin, Couso, Juan Pablo, Deutsch, Eric W, Flicek, Paul, Frankish, Adam, Gerstein, Mark, Hubner, Norbert, Ingolia, Nicholas T, Kellis, Manolis, Menschaert, Gerben, Moritz, Robert L, Ohler, Uwe, Roucou, Xavier, Saghatelian, Alan, Weissman, Jonathan S, van Heesch, Sebastiaan

المصدر: Nature Biotechnology. 40(7)

مصطلحات موضوعية: Molecular Sequence Annotation, Open Reading Frames, Protein Biosynthesis, Ribosomes

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/02j8m4db

المؤلفون: Whited, A.M., Jungreis, Irwin, Allen, Jeffre, Cleveland, Christina L., Mudge, Jonathan M., Kellis, Manolis, Rinn, John L., Hough, Loren E.

المصدر: In Biophysical Reports 11 September 2024 4(3)

المؤلفون: Fedorova, Alla D.^{Aff1, Aff2, IDs41467023444056_cor1}, Kiniry, Stephen J., Andreev, Dmitry E.^{Aff3, Aff4}, Mudge, Jonathan M., Baranov, Pavel V.^{Aff1, IDs41467023444056_cor5}

المصدر: Nature Communications. 15(1)

المؤلفون: Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha

المصدر: Nucleic Acids Research. 49(D1)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Genetics, Animals, Apicomplexa, Base Sequence, Betacoronavirus, Databases, Nucleic Acid, Fungi, Gene Ontology, Humans, Internet, Molecular Sequence Annotation, Nucleic Acid Conformation, RNA, Untranslated, Sequence Analysis, RNA, Software, RNAcentral Consortium, Environmental Sciences, Information and Computing Sciences, Developmental Biology, Biological sciences, Chemical sciences, Environmental sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4mc6x82c

المؤلفون: Sandmann, Clara-L., Schulz, Jana F., Ruiz-Orera, Jorge, Kirchner, Marieluise, Ziehm, Matthias, Adami, Eleonora, Marczenke, Maike, Christ, Annabel, Liebe, Nina, Greiner, Johannes, Schoenenberger, Aaron, Muecke, Michael B., Liang, Ning, Moritz, Robert L., Sun, Zhi, Deutsch, Eric W., Gotthardt, Michael, Mudge, Jonathan M., Prensner, John R., Willnow, Thomas E., Mertins, Philipp, van Heesch, Sebastiaan, Hubner, Norbert

المصدر: In Molecular Cell 16 March 2023 83(6):994-1011

المؤلفون: Prensner, John R., Abelin, Jennifer G., Kok, Leron W., Clauser, Karl R., Mudge, Jonathan M., Ruiz-Orera, Jorge, Bassani-Sternberg, Michal, Moritz, Robert L., Deutsch, Eric W., van Heesch, Sebastiaan

المصدر: In Molecular & Cellular Proteomics

المؤلفون: Silvennoinen, Katri^{Aff1, Aff2}, Gawel, Kinga^{Aff3, Aff4}, Tsortouktzidis, Despina^{Aff5, Aff6}, Pitsch, Julika^{Aff5, Aff6}, Alhusaini, Saud^{Aff7, Aff8}, van Loo, Karen M. J.^{Aff5, Aff9}, Picardo, Richard, Michalak, Zuzanna, Pagni, Susanna^{Aff1, Aff2}, Martins Custodio, Helena^{Aff1, Aff2}, Mills, James^{Aff1, Aff2}, Whelan, Christopher D.^{Aff7, Aff11}, de Zubicaray, Greig I., McMahon, Katie L., van der Ent, Wietske, Kirstein-Smardzewska, Karolina J., Tiraboschi, Ettore, Mudge, Jonathan M., Frankish, Adam, Thom, Maria, Wright, Margaret J., Thompson, Paul M., Schoch, Susanne^{Aff5, Aff6}, Becker, Albert J., Esguerra, Camila V., Sisodiya, Sanjay M.^{Aff1, Aff2, IDs00401022024290_cor26}

المصدر: Acta Neuropathologica: Pathology and Mechanisms of Neurological Disease. 144(1):107-127

المؤلفون: Fedorova, Alla D.^{Aff1, Aff2, IDs41467022355956_cor1}, Kiniry, Stephen J., Andreev, Dmitry E.^{Aff3, Aff4}, Mudge, Jonathan M., Baranov, Pavel V.^{Aff1, IDs41467022355956_cor5}

المصدر: Nature Communications. 13(1)