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المؤلفون: Nadimpalli HP; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Katsioudi G; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Arpa ES; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Chikhaoui L; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Arpat AB; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Liechti A; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland., Palais G; German Cancer Research Center (DKFZ), Division of Virus-Associated Carcinogenesis, Im Neuenheimer Feld 280, Heidelberg, 69120, Germany., Tessmer C; German Cancer Research Center (DKFZ), Core Facility Antibodies, Im Neuenheimer Feld 280, Heidelberg, 69120, Germany., Hofmann I; German Cancer Research Center (DKFZ), Core Facility Antibodies, Im Neuenheimer Feld 280, Heidelberg, 69120, Germany., Galy B; German Cancer Research Center (DKFZ), Division of Virus-Associated Carcinogenesis, Im Neuenheimer Feld 280, Heidelberg, 69120, Germany., Gatfield D; Center for Integrative Genomics, University of Lausanne, Lausanne, 1015, Switzerland. david.gatfield@unil.ch.

المصدر: Genome biology [Genome Biol] 2024 May 21; Vol. 25 (1), pp. 128. Date of Electronic Publication: 2024 May 21.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Iron Regulatory Protein 1*/metabolism , Iron Regulatory Protein 1*/genetics , Iron Regulatory Protein 2*/metabolism , Iron Regulatory Protein 2*/genetics , Circadian Rhythm*/genetics , RNA, Messenger*/metabolism , RNA, Messenger*/genetics , Liver*/metabolism , Iron*/metabolism, Animals ; Mice ; Gene Expression Regulation ; Response Elements ; Mice, Inbred C57BL ; Male ; Feeding Behavior

المؤلفون: Arpat AB; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland., Liechti A; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., De Matos M; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Dreos R; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland., Janich P; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Gatfield D; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.

المصدر: Genome research [Genome Res] 2020 Jul; Vol. 30 (7), pp. 985-999. Date of Electronic Publication: 2020 Jul 23.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

مواضيع طبية MeSH: Peptide Chain Elongation, Translational* , Transcriptome*, Ribosomes/*metabolism, Amino Acids ; Animals ; Codon ; Codon Usage ; Evolution, Molecular ; Mice ; Peptides/chemistry ; Protein Biosynthesis ; Protein Sorting Signals ; Protein Structure, Secondary ; Sequence Analysis, RNA

المؤلفون: Tuck AC; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland., Rankova A; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland., Arpat AB; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Liechti LA; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Hess D; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland., Iesmantavicius V; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland., Castelo-Szekely V; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Gatfield D; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Bühler M; Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland; University of Basel, Petersplatz 10, 4003 Basel, Switzerland. Electronic address: marc.buehler@fmi.ch.

المصدر: Molecular cell [Mol Cell] 2020 Mar 19; Vol. 77 (6), pp. 1222-1236.e13. Date of Electronic Publication: 2020 Feb 10.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

مواضيع طبية MeSH: Protein Biosynthesis* , RNA Stability*, Apoptosis Regulatory Proteins/*physiology , DNA-Binding Proteins/*physiology , Exoribonucleases/*physiology , Mouse Embryonic Stem Cells/*metabolism , RNA Helicases/*physiology , RNA, Messenger/*metabolism, Animals ; CRISPR-Cas Systems ; Gene Expression Regulation ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Mouse Embryonic Stem Cells/cytology ; Open Reading Frames ; Proto-Oncogene Proteins/physiology ; RNA, Messenger/chemistry ; RNA, Messenger/genetics ; Ribosomes/genetics ; Ribosomes/metabolism

المؤلفون: Hughes ME; 1 Division of Pulmonary and Critical Care Medicine, Washington University School of Medicine, St. Louis, Missouri, USA., Abruzzi KC; 2 Department of Biology and Howard Hughes Medical Institute, Brandeis University, Waltham, Massachusetts, USA., Allada R; 3 Department of Neurobiology, Northwestern University, Evanston, Illinois, USA., Anafi R; 4 Division of Sleep Medicine, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA., Arpat AB; 5 Center for Integrative Genomics, Génopode, University of Lausanne, Lausanne, Switzerland.; 6 Vital-IT, Swiss Institute of Bioinformatics, Lausanne, Switzerland., Asher G; 7 Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel., Baldi P; 8 Institute for Genomics and Bioinformatics, University of California, Irvine, USA., de Bekker C; 9 Department of Biology, University of Central Florida, Orlando, USA., Bell-Pedersen D; 10 Department of Biology, Texas A&M University, College Station, USA., Blau J; 11 Department of Biology, New York University, New York, USA., Brown S; 12 Institute of Pharmacology and Toxicology, University of Zürich, Switzerland., Ceriani MF; 13 Laboratorio de Genética del Comportamiento, Fundación Instituto Leloir, IIBBA-CONICET, Buenos Aires, Argentina., Chen Z; 14 Department of Biochemistry and Molecular Biology, University of Texas Health Science Center, Houston, USA., Chiu JC; 15 Department of Entomology and Nematology, University of California, Davis, USA., Cox J; 16 Computational Systems Biochemistry, Max-Planck Institute of Biochemistry, Martinsried, Germany., Crowell AM; 17 Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., DeBruyne JP; 18 Department of Pharmacology and Toxicology, Morehouse School of Medicine, Atlanta, Georgia, USA., Dijk DJ; 19 Surrey Sleep Research Centre, University of Surrey, Guildford, UK., DiTacchio L; 20 The University of Kansas Medical Center, University of Kansas, Kansas City, USA., Doyle FJ; 21 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, Massachusetts, USA., Duffield GE; 22 Department of Biological Sciences and Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana, USA., Dunlap JC; 17 Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., Eckel-Mahan K; 23 Institute of Molecular Medicine, McGovern Medical School, UT Health Houston, Houston, Texas, USA., Esser KA; 24 Department of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, USA., FitzGerald GA; 25 Systems Pharmacology and Translational Therapeutics, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA., Forger DB; 26 Department of Mathematics, University of Michigan, Ann Arbor, USA., Francey LJ; 27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA., Fu YH; 28 Kavli Institute for Fundamental Neuroscience, Weill Institute of Neuroscience, Department of Neurology, University of California, San Francisco, USA., Gachon F; 29 Department of Diabetes and Circadian Rhythms, Nestlé Institute of Health Sciences, Lausanne, Switzerland., Gatfield D; 5 Center for Integrative Genomics, Génopode, University of Lausanne, Lausanne, Switzerland., de Goede P; 30 Department of Endocrinology & Metabolism, Academic Medical Center, Amsterdam, the Netherlands., Golden SS; 31 Center for Circadian Biology and Division of Biological Sciences, University of California, San Diego, La Jolla, USA., Green C; 32 Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, USA., Harer J; 33 Department of Mathematics, Duke University, Durham, North Carolina, USA., Harmer S; 34 Department of Plant Biology, University of California, Davis, USA., Haspel J; 1 Division of Pulmonary and Critical Care Medicine, Washington University School of Medicine, St. Louis, Missouri, USA., Hastings MH; 35 Medical Research Council Laboratory of Molecular Biology, Cambridge, UK., Herzel H; 36 Institute for Theoretical Biology, Charité-Universitätsmedizin Berlin, Germany., Herzog ED; 37 Department of Biology, Washington University in St. Louis, Missouri, USA., Hoffmann C; 1 Division of Pulmonary and Critical Care Medicine, Washington University School of Medicine, St. Louis, Missouri, USA., Hong C; 27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA., Hughey JJ; 38 Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee, USA., Hurley JM; 39 Department of Biological Sciences, Rensselaer Polytechnic Institute, Troy, New York, USA., de la Iglesia HO; 40 Department of Biology, University of Washington, Seattle, USA., Johnson C; 41 Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA., Kay SA; 42 Department of Cell and Molecular Biology, The Scripps Research Institute, University of California, San Diego, La Jolla, USA., Koike N; 43 Department of Physiology and Systems Bioscience, Kyoto Prefectural University of Medicine, Japan., Kornacker K; 44 Division of Sensory Biophysics, The Ohio State University, Columbus, USA., Kramer A; 45 Laboratory of Chronobiology, Charité Universitätsmedizin Berlin, Germany., Lamia K; 46 Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California, USA., Leise T; 47 Department of Mathematics and Statistics, Amherst College, Amherst, Massachusetts, USA., Lewis SA; 1 Division of Pulmonary and Critical Care Medicine, Washington University School of Medicine, St. Louis, Missouri, USA., Li J; 1 Division of Pulmonary and Critical Care Medicine, Washington University School of Medicine, St. Louis, Missouri, USA.; 48 Department of Biology, University of Missouri-St. Louis, USA., Li X; 49 Department of Cell Biology, College of Life Sciences at Wuhan University, China., Liu AC; 50 Department of Biological Sciences, University of Memphis, Tennessee, USA., Loros JJ; 51 Department of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA., Martino TA; 52 Centre for Cardiovascular Investigations, Department of Biomedical Sciences, University of Guelph, Guelph, Ontario, Canada., Menet JS; 10 Department of Biology, Texas A&M University, College Station, USA., Merrow M; 53 Institute of Medical Psychology, Faculty of Medicine, LMU Munich, Germany., Millar AJ; 54 SynthSys and School of Biological Sciences, University of Edinburgh, UK., Mockler T; 55 Donald Danforth Plant Science Center, St. Louis, Missouri, USA., Naef F; 56 The Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Switzerland., Nagoshi E; 57 Department of Genetics and Evolution, University of Geneva, Switzerland., Nitabach MN; 58 Department of Cellular and Molecular Physiology, Department of Genetics, Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, Connecticut, USA., Olmedo M; 59 Department of Genetics, University of Seville, Spain., Nusinow DA; 55 Donald Danforth Plant Science Center, St. Louis, Missouri, USA., Ptáček LJ; 60 Department of Neurology, University of California, San Francisco, USA., Rand D; 61 Warwick Systems Biology and Mathematics Institute, University of Warwick, Conventry, UK., Reddy AB; 62 The Francis Crick Institute, London, UK, and UCL Institute of Neurology, Queen Square, London, UK., Robles MS; 53 Institute of Medical Psychology, Faculty of Medicine, LMU Munich, Germany., Roenneberg T; 53 Institute of Medical Psychology, Faculty of Medicine, LMU Munich, Germany., Rosbash M; 2 Department of Biology and Howard Hughes Medical Institute, Brandeis University, Waltham, Massachusetts, USA., Ruben MD; 27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA., Rund SSC; 63 Centre for Immunity, Infection and Evolution, University of Edinburgh, UK., Sancar A; 64 Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, USA., Sassone-Corsi P; 65 Department of Biological Chemistry, Center for Epigenetics and Metabolism, University of California, Irvine, USA., Sehgal A; 66 Howard Hughes Medical Institute, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA., Sherrill-Mix S; 67 Department of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, USA., Skene DJ; 68 Chronobiology, Faculty of Health and Medical Sciences, University of Surrey, Guildford, UK., Storch KF; 69 Department of Psychiatry, Douglas Mental Health University Institute, McGill University, Montreal, Canada., Takahashi JS; 70 Howard Hughes Medical Institute, Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, USA., Ueda HR; 71 Department of Systems Pharmacology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan Laboratory for Synthetic Biology, RIKEN Quantitative Biology Center, Osaka, Japan., Wang H; 72 Center for Circadian Clocks, Soochow University, Suzhou, Jiangsu, China., Weitz C; 73 Department of Neurobiology, Harvard Medical School, Boston, Massachusetts, USA., Westermark PO; 74 Institute of Genetics and Biometry, Leibniz Institute for Farm Animal Biology, Dummerstorf, Germany., Wijnen H; 75 Biological Sciences and Institute for Life Sciences, University of Southampton, UK., Xu Y; 76 Cam-Su GRC, Soochow University, Suzhou, China., Wu G; 27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA., Yoo SH; 14 Department of Biochemistry and Molecular Biology, University of Texas Health Science Center, Houston, USA., Young M; 77 Laboratory of Genetics, Rockefeller University, New York, New York, USA., Zhang EE; 78 National Institute of Biological Sciences, Beijing, China., Zielinski T; 54 SynthSys and School of Biological Sciences, University of Edinburgh, UK., Hogenesch JB; 27 Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.

المصدر: Journal of biological rhythms [J Biol Rhythms] 2017 Oct; Vol. 32 (5), pp. 380-393. Date of Electronic Publication: 2017 Nov 03.

نوع المنشور: Guideline; Journal Article

بيانات الدورية: Publisher: Sage Publishers Country of Publication: United States NLM ID: 8700115 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-4531 (Electronic) Linking ISSN: 07487304 NLM ISO Abbreviation: J Biol Rhythms Subsets: MEDLINE

مواضيع طبية MeSH: Genome* , Genomics*/statistics & numerical data, Circadian Rhythm/*genetics , Statistics as Topic/*methods, Biostatistics ; Computational Biology/methods ; Humans ; Metabolomics ; Proteomics ; Software ; Systems Biology

المؤلفون: Castelo-Szekely V; Center for Integrative Genomics, University of Lausanne, Génopode, 1015, Lausanne, Switzerland., Arpat AB; Center for Integrative Genomics, University of Lausanne, Génopode, 1015, Lausanne, Switzerland.; Vital-IT, Swiss Institute of Bioinformatics, Génopode, 1015, Lausanne, Switzerland., Janich P; Center for Integrative Genomics, University of Lausanne, Génopode, 1015, Lausanne, Switzerland., Gatfield D; Center for Integrative Genomics, University of Lausanne, Génopode, 1015, Lausanne, Switzerland. david.gatfield@unil.ch.

المصدر: Genome biology [Genome Biol] 2017 Jun 16; Vol. 18 (1), pp. 116. Date of Electronic Publication: 2017 Jun 16.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Protein Biosynthesis*, Circadian Clocks/*genetics , Circadian Rhythm/*genetics , Transcriptome/*genetics, Animals ; Gene Expression Regulation, Developmental ; Kidney/metabolism ; Liver/metabolism ; Mice ; RNA, Messenger/genetics ; Ribosomes/genetics

المؤلفون: Zhao H; State Key Laboratory of Rice Biology, Institute of Crop Sciences, Zhejiang University, Hangzhou, 310058, China.; Hubei Collaborative Innovation Center for Grain Industry, Jingzhou, 434025, China., Frank T; Lehrstuhl für Allgemeine Lebensmitteltechnologie, Technische Universität München, Maximum-von-Imhof-Forum 2, Freising-Weihenstephan, D-85354, Germany., Tan Y; State Key Laboratory of Rice Biology, Institute of Crop Sciences, Zhejiang University, Hangzhou, 310058, China., Zhou C; Lehrstuhl für Allgemeine Lebensmitteltechnologie, Technische Universität München, Maximum-von-Imhof-Forum 2, Freising-Weihenstephan, D-85354, Germany., Jabnoune M; Department of Plant Molecular Biology, Biophore, University of Lausanne, Lausanne, CH-1015, Switzerland., Arpat AB; Department of Plant Molecular Biology, Biophore, University of Lausanne, Lausanne, CH-1015, Switzerland., Cui H; Institute of Nuclear Agricultural Sciences, Zhejiang University, Hangzhou, 310029, China., Huang J; Institute of Nuclear Agricultural Sciences, Zhejiang University, Hangzhou, 310029, China., He Z; Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200032, China., Poirier Y; Department of Plant Molecular Biology, Biophore, University of Lausanne, Lausanne, CH-1015, Switzerland., Engel KH; Lehrstuhl für Allgemeine Lebensmitteltechnologie, Technische Universität München, Maximum-von-Imhof-Forum 2, Freising-Weihenstephan, D-85354, Germany., Shu Q; State Key Laboratory of Rice Biology, Institute of Crop Sciences, Zhejiang University, Hangzhou, 310058, China.; Hubei Collaborative Innovation Center for Grain Industry, Jingzhou, 434025, China.

المصدر: The New phytologist [New Phytol] 2016 Aug; Vol. 211 (3), pp. 926-39. Date of Electronic Publication: 2016 Apr 25.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Wiley on behalf of New Phytologist Trust Country of Publication: England NLM ID: 9882884 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1469-8137 (Electronic) Linking ISSN: 0028646X NLM ISO Abbreviation: New Phytol Subsets: MEDLINE

مواضيع طبية MeSH: Metabolomics*, Anion Transport Proteins/*metabolism , Oryza/*metabolism , Phosphorus/*metabolism , Phytic Acid/*metabolism , Plant Proteins/*metabolism , Seeds/*metabolism, Biological Transport ; Chromosome Mapping ; Cloning, Molecular ; Endoplasmic Reticulum/metabolism ; Gene Expression Regulation, Plant ; Genes, Plant ; Glucuronidase/metabolism ; Metabolic Networks and Pathways ; Metabolome ; Mutation/genetics ; Oryza/genetics ; Phytic Acid/biosynthesis ; Plant Vascular Bundle/metabolism ; Subcellular Fractions/metabolism ; Sulfates/metabolism ; Sulfur/metabolism