المؤلفون: Egill Richard, Baptiste Darracq, Eloi Littner, Gael A Millot, Valentin Conte, Thomas Cokelaer, Jan Engelstädter, Eduardo P C Rocha, Didier Mazel, Céline Loot

المصدر: PLoS Genetics, Vol 20, Iss 4, p e1011231 (2024)

مصطلحات موضوعية: Genetics, QH426-470

وصف الملف: electronic resource

Relation: https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1011231&type=printable; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

URL الوصول: https://doaj.org/article/7858995495e6436592d51e1f865adab5

المؤلفون: Egill Richard, Baptiste Darracq, Céline Loot, Didier Mazel

المصدر: Cells, Vol 11, Iss 6, p 925 (2022)

مصطلحات موضوعية: integron, bacterial genetics, mobile elements, site specific recombination, host factors, bacterial evolution, Cytology, QH573-671

وصف الملف: electronic resource

Relation: https://www.mdpi.com/2073-4409/11/6/925; https://doaj.org/toc/2073-4409

URL الوصول: https://doaj.org/article/5578f519b7174e52bccaea312d1e99f1

المؤلفون: Céline Loot, Gael A. Millot, Egill Richard, Eloi Littner, Claire Vit, Frédéric Lemoine, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo PC Rocha, Didier Mazel

المساهمون: Plasticité du Génome Bactérien - Bacterial Genome Plasticity (PGB), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Collège Doctoral, Sorbonne Université (SU), Microbiologie Fondamentale et Pathogénicité (MFP), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Viral DNA Integration and Chromatin Dynamics Network (DyNAVir), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS)-Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Recherche en Informatique (LRI), CentraleSupélec-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Génomique évolutive des Microbes / Microbial Evolutionary Genomics, This work was supported by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS-UMR 3525), the Fondation pour la Recherche Médicale (FRM Grant No. EQU202103012569), ANR Chromintevol (ANR-21-CE12-0002-01), and by the French Government’s Investissement d’Avenir program Laboratoire d’Excellence ‘Integrative Biology of Emerging Infectious Diseases’ [ANR-10-LABX-62-IBEID]., We would like to thank Gaspard Macaux for its experimental help. We also thank Jason Bland, a native English speaker, for helpful reading of the manuscript and all the lab members for helpful discussion., C.L and D.M designed the research. C.L, E.R, C.V, B.D, V.P, F.L and T.N performed the experiments. G.M and F. L performed the computational analysis of Deep sequencing data. J.C and E.P.C.R performed the bioinformatics genomics analysis. C.L and G. M wrote the draft of the manuscript. All authors read, amended the manuscript, and approved its final version., ANR-21-CE12-0002,Chromintevol,Etude de l'impact des intégrons chromosiques sur l'évolution des bactéries(2021), ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)

مصطلحات موضوعية: Bacterial evolution, genome-wide mapping, antibiotic resistance, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, site-specific recombination, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, cassette dynamics, attC sites, Integron

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::58a0cdfc222f67e58bbadd860da648ec
https://doi.org/10.1101/2022.09.11.507474

المؤلفون: Egill Richard, Baptiste Darracq, Eloi Littner, Claire Vit, Clémence Whiteway, Julia Bos, Florian Fournes, Geneviève Garriss, Valentin Conte, Delphine Lapaillerie, Vincent Parissi, François Rousset, Ole Skovgaard, David Bikard, Eduardo P. C. Rocha, Didier Mazel, Céline Loot

المساهمون: Plasticité du Génome Bactérien - Bacterial Genome Plasticity (PGB), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Ecole Doctorale Complexité du Vivant (ED515), Sorbonne Université (SU), Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Direction générale de l'Armement (DGA), Microbiologie Fondamentale et Pathogénicité (MFP), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Viral DNA Integration and Chromatin Dynamics Network (DyNAVir), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS)-Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Biologie de Synthèse - Synthetic biology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Department of Science, Systems and Models, Roskilde Universitet [Roskilde], This work was supported by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS-UMR 3525), the Fondation pour la Recherche Médicale (FRM Grant No. EQU202103012569), the ANR Chromintevol (ANR-21-CE12-0002-01), the French Government’s Investissement d’Avenir program Laboratoire d’Excellence ‘Integrative Biology of Emerging Infectious Diseases’ [ANR-10-LABX-62-IBEID], the Ministère de l’Enseignement Supérieur et de la Recherche and the Direction Générale de l’Armement (DGA), We thank Jun Teramoto and Akihiko Kondo for sharing their construct for base-editing. We thank Marc Monot, Laurence Ma, Juliana Pipoli Da Fonseca and Thomas Cocklaer from the Biomics platform, C2RT, Institut Pasteur, Paris, France, ANR-21-CE12-0002,Chromintevol,Etude de l'impact des intégrons chromosiques sur l'évolution des bactéries(2021), ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)

مصطلحات موضوعية: sitespecific recombination, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, mobile elements, genetic stability, bacterial evolution and plasticity, genome organization, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, toxin-antitoxin cassettes, sedentary chromosomal integron

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92f096d46eab638a46a7778b380b54e0
https://doi.org/10.1101/2022.08.03.502626