المؤلفون: Smith LP; 7284 University of Washington , Seattle, USA., Bergmann FT; BioQUANT/COS, 132140 Heidelberg University , Heidelberg, Germany., Garny A; Auckland Bioengineering Institute, 428614 The University of Auckland , Auckland, New Zealand., Helikar T; University of Nebraska, Lincoln, USA., Karr J; 5925 Icahn School of Medicine at Mount Sinai , New York, USA., Nickerson D; Auckland Bioengineering Institute, 428614 The University of Auckland , Auckland, New Zealand., Sauro H; 7284 University of Washington , Seattle, USA., Waltemath D; University of Greifswald, Greifswald, Germany., König M; 9373 Humboldt University , Berlin, Germany.

المصدر: Journal of integrative bioinformatics [J Integr Bioinform] 2024 Apr 15; Vol. 21 (1). Date of Electronic Publication: 2024 Apr 15 (Print Publication: 2024).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: De Gruyter Open Country of Publication: Germany NLM ID: 101503361 Publication Model: eCollection Cited Medium: Internet ISSN: 1613-4516 (Electronic) Linking ISSN: 16134516 NLM ISO Abbreviation: J Integr Bioinform Subsets: MEDLINE

مواضيع طبية MeSH: Programming Languages* , Computer Simulation* , Software*, Algorithms ; Models, Biological ; Humans ; Computational Biology/methods

المؤلفون: Bendig T; BioQuant, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany., Ulmer A; Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany., Luzia L; Systems Biology Lab, Vrije Universiteit, Amsterdam, the Netherlands., Müller S; Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany., Sahle S; BioQuant, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany., Bergmann FT; BioQuant, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany., Lösch M; Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany., Erdemann F; Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany., Zeidan AA; Systems Biology, R&D Discovery, Chr. Hansen A/S, Hørsholm, Denmark., Mendoza SN; Systems Biology Lab, Vrije Universiteit, Amsterdam, the Netherlands., Teusink B; Systems Biology Lab, Vrije Universiteit, Amsterdam, the Netherlands., Takors R; Institute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany., Kummer U; BioQuant, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany. Electronic address: ursula.kummer@bioquant.uni-heidelberg.de., Figueiredo AS; BioQuant, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany. Electronic address: sofia.figueiredo@alumni.uni-heidelberg.de.

المصدر: Journal of biotechnology [J Biotechnol] 2023 Sep 10; Vol. 374, pp. 90-100. Date of Electronic Publication: 2023 Aug 10.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Science Publishers Country of Publication: Netherlands NLM ID: 8411927 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-4863 (Electronic) Linking ISSN: 01681656 NLM ISO Abbreviation: J Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Lactobacillus delbrueckii*/metabolism, Lactose ; Carbohydrate Metabolism ; Fermentation ; Hydrogen-Ion Concentration

المؤلفون: Lauterbach S; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany., Dienhart H; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany., Range J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany., Malzacher S; Institute of Bio- and Geosciences 1, Forschungszentrum Jülich, Jülich, Germany.; Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany., Spöring JD; Institute of Bio- and Geosciences 1, Forschungszentrum Jülich, Jülich, Germany.; Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany., Rother D; Institute of Bio- and Geosciences 1, Forschungszentrum Jülich, Jülich, Germany.; Aachen Biology and Biotechnology, RWTH Aachen University, Aachen, Germany., Pinto MF; i3S, Instituto de Investigação e Inovação em Saúde da Universidade do Porto, University of Porto, Porto, Portugal., Martins P; i3S, Instituto de Investigação e Inovação em Saúde da Universidade do Porto, University of Porto, Porto, Portugal., Lagerman CE; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA., Bommarius AS; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, USA., Høst AV; Department of Chemical and Biochemical Engineering, Technical University of Denmark, Kgs Lyngby, Denmark., Woodley JM; Department of Chemical and Biochemical Engineering, Technical University of Denmark, Kgs Lyngby, Denmark., Ngubane S; Department of Biotechnology and Food Science, Durban University of Technology, Durban, South Africa., Kudanga T; Department of Biotechnology and Food Science, Durban University of Technology, Durban, South Africa., Bergmann FT; BioQUANT/COS, Heidelberg University, Heidelberg, Germany., Rohwer JM; Department of Biochemistry, Stellenbosch University, Stellenbosch, South Africa., Iglezakis D; Information and Communication Center, University of Stuttgart, Stuttgart, Germany., Weidemann A; Heidelberg Institute for Theoretical Studies, Heidelberg, Germany., Wittig U; Heidelberg Institute for Theoretical Studies, Heidelberg, Germany., Kettner C; Beilstein-Institut, Frankfurt am Main, Germany., Swainston N; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK., Schnell S; Department of Biological Sciences and Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN, USA., Pleiss J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Stuttgart, Germany. Juergen.Pleiss@itb.uni-stuttgart.de.

المصدر: Nature methods [Nat Methods] 2023 Mar; Vol. 20 (3), pp. 400-402. Date of Electronic Publication: 2023 Feb 09.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, P.H.S.; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: Data Management* , Metadata*, Reproducibility of Results ; Databases, Factual ; Kinetics

المؤلفون: Range J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Germany., Halupczok C; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Germany., Lohmann J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Germany., Swainston N; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, UK., Kettner C; Beilstein-Institut, Frankfurt am Main, Germany., Bergmann FT; BioQUANT/COS, Heidelberg University, Germany., Weidemann A; Heidelberg Institute for Theoretical Studies, Germany., Wittig U; Heidelberg Institute for Theoretical Studies, Germany., Schnell S; Department of Molecular & Integrative Physiology, University of Michigan Medical School, Ann Arbor, MI, USA.; Department of Computational Medicine & Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA., Pleiss J; Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Germany.

المصدر: The FEBS journal [FEBS J] 2022 Oct; Vol. 289 (19), pp. 5864-5874. Date of Electronic Publication: 2021 Dec 26.

نوع المنشور: Journal Article; Review; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Published by Blackwell Pub. on behalf of the Federation of European Biochemical Societies Country of Publication: England NLM ID: 101229646 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1742-4658 (Electronic) Linking ISSN: 1742464X NLM ISO Abbreviation: FEBS J Subsets: MEDLINE

مواضيع طبية MeSH: Software*, Biocatalysis ; Databases, Factual

المؤلفون: Shaikh B; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Smith LP; University of Washington, Seattle, WA 98105, USA., Vasilescu D; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Marupilla G; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Wilson M; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Agmon E; Stanford University, Stanford, CA 94305, USA., Agnew H; LibreTexts, USA., Andrews SS; University of Washington, Seattle, WA 98105, USA., Anwar A; New York University, Brooklyn, NY 11201, USA., Beber ME; Unseen Bio ApS, 2100 København Ø, Denmark., Bergmann FT; Heidelberg University, 69120 Heidelberg, Germany., Brooks D; University of Auckland, 1010 Auckland, New Zealand., Brusch L; Technical University of Dresden, 01187 Dresden, Germany., Calzone L; Institut Curie, 75248 Paris, France., Choi K; Korea Institute for Advanced Study, 02455 Seoul, South Korea., Cooper J; University of North Carolina, Asheville, Ashville, NC 28804, USA., Detloff J; Independent, Madison, WI 53705, USA., Drawert B; University of North Carolina, Asheville, Ashville, NC 28804, USA., Dumontier M; Maastricht University, 6200 Maastricht, Netherlands., Ermentrout GB; University of Pittsburgh, Pittsburgh, PA 15260, USA., Faeder JR; University of Pittsburgh, Pittsburgh, PA 15260, USA., Freiburger AP; University of Victoria, Victoria, BC V8P 5C2, Canada., Fröhlich F; Harvard Medical School, Boston, MA 02115, USA., Funahashi A; Keio University, Yokohama 223-8522, Japan., Garny A; University of Auckland, 1010 Auckland, New Zealand., Gennari JH; University of Washington, Seattle WA 98019, USA., Gleeson P; University College London, London WC1E 6BT, UK., Goelzer A; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Haiman Z; University of California, San Diego, La Jolla, CA 92093, USA., Hasenauer J; Universität Bonn, 53115 Bonn, Germany., Hellerstein JL; University of Washington, Seattle, WA 98105, USA., Hermjakob H; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Hoops S; University of Virginia, Charlottesville, VA 22904, USA., Ison JC; CNRS, UMS 3601, Institut Français de Bioinformatique, IFB-core, 91000 Évry-Courcouronnes, France., Jahn D; Technical University of Dresden, 01187 Dresden, Germany., Jakubowski HV; College of Saint Benedict and Saint John's University, St. Joseph, MN 56374, USA., Jordan R; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Kalaš M; University of Bergen, 5020 Bergen, Norway., König M; Humboldt University of Berlin, 10115 Berlin, Germany., Liebermeister W; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Sheriff RSM; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Mandal S; Technical University of Dresden, 01069 Dresden, Germany., McDougal R; Yale University, New Haven, CT 06511, USA., Medley JK; Autodesk, Inc., San Rafael, CA 94903, USA., Mendes P; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Müller R; Technical University of Dresden, 01187 Dresden, Germany., Myers CJ; University of Colorado at Boulder, Boulder CO, 80309, USA., Naldi A; Inria Saclay - Île-de-France Research Centre, 91120 Palaiseau, France., Nguyen TVN; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Nickerson DP; University of Auckland, 1010 Auckland, New Zealand., Olivier BG; Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, Netherlands., Patoliya D; Sarvajanik College of Engineering & Technology, Surat, Gujarat 395001, India., Paulevé L; Centre National de la Recherche Scientifique, 33400 Talence, France., Petzold LR; University of California, Santa Barbara, Santa Barbara, CA 93106, USA., Priya A; Birla Institute of Technology, Mesra, Jharkhand 835215, India., Rampadarath AK; University of Auckland, 1010 Auckland, New Zealand., Rohwer JM; Stellenbosch University, Stellenbosch, 7600, South Africa., Saglam AS; University of Pittsburgh, Pittsburgh, PA 15260, USA., Singh D; Subconscious Compute Pvt. Ltd., Bangalore, India., Sinha A; University College London, London, WC1E 6BT, UK., Snoep J; Stellenbosch University, Stellenbosch, 7600, South Africa., Sorby H; University of Auckland, 1010 Auckland, New Zealand., Spangler R; Allen Institute for Cell Science, Seattle, WA 98109, USA., Starruß J; Technical University of Dresden, 01187 Dresden, Germany., Thomas PJ; University of Utah, Salt Lake City, UT 84112, USA., van Niekerk D; Stellenbosch University, Stellenbosch, 7600, South Africa., Weindl D; Helmholtz Zentrum München GmbH and German Research Center for Environmental Health, 85764 Neuherberg, Germany., Zhang F; National Institutes of Health, Bethesda, MD 20892, USA., Zhukova A; Institut Pasteur, 75015 Paris, France., Goldberg AP; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Schaff JC; University of Connecticut School of Medicine, Farmington, CT 06030, USA.; Applied BioMath LLC, Concord, MA 01742, USA., Blinov ML; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Sauro HM; University of Washington, Seattle, WA 98105, USA., Moraru II; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Karr JR; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

المصدر: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W108-W114.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: Computer Simulation* , Software*, Humans ; Bioengineering ; Models, Biological ; Registries ; Research Personnel

المؤلفون: Loghmani SB; Department of Modelling of Biological Processes, BioQuant/COS Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Veith N; Department of Modelling of Biological Processes, BioQuant/COS Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Sahle S; Department of Modelling of Biological Processes, BioQuant/COS Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Bergmann FT; Department of Modelling of Biological Processes, BioQuant/COS Heidelberg, Heidelberg University, 69120 Heidelberg, Germany., Olivier BG; Systems Biology Lab, AIMMS, Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, The Netherlands., Kummer U; Department of Modelling of Biological Processes, BioQuant/COS Heidelberg, Heidelberg University, 69120 Heidelberg, Germany.

المصدر: Metabolites [Metabolites] 2022 Jan 05; Vol. 12 (1). Date of Electronic Publication: 2022 Jan 05.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101578790 Publication Model: Electronic Cited Medium: Print ISSN: 2218-1989 (Print) Linking ISSN: 22181989 NLM ISO Abbreviation: Metabolites Subsets: PubMed not MEDLINE

المؤلفون: Smith LP; University of Washington, Seattle, USA., Bergmann FT; BioQUANT/COS, Heidelberg University, Heidelberg, Germany., Garny A; Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand., Helikar T; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, USA., Karr J; Icahn School of Medicine at Mount Sinai, New York, USA., Nickerson D; Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand., Sauro H; University of Washington, Seattle, USA., Waltemath D; University of Greifswald, Greifswald, Germany., König M; Institute for Theoretical Biology, Institute for Biology, Humboldt University, Berlin, Germany.

المصدر: Journal of integrative bioinformatics [J Integr Bioinform] 2021 Oct 05; Vol. 18 (3), pp. 20210021. Date of Electronic Publication: 2021 Oct 05.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: De Gruyter Open Country of Publication: Germany NLM ID: 101503361 Publication Model: Electronic Cited Medium: Internet ISSN: 1613-4516 (Electronic) Linking ISSN: 16134516 NLM ISO Abbreviation: J Integr Bioinform Subsets: MEDLINE

مواضيع طبية MeSH: Language* , Programming Languages*, Ecosystem ; Models, Biological ; Systems Biology

المؤلفون: Förster J; Immunotherapy and Immunoprevention, German Cancer Research Center (DKFZ), INF280, 69120 Heidelberg, Germany., Bergmann FT; Modelling of Biological Processes, BioQuant/COS, Heidelberg University, INF267, 69120 Heidelberg, Germany., Pahle J; Biological Information Processing Group, BioQuant, Heidelberg University, INF267, 69120 Heidelberg, Germany.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Sep 09; Vol. 37 (17), pp. 2778-2779.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Schmiester L; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Schälte Y; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Bergmann FT; BioQUANT/COS, Heidelberg University, Heidelberg, Germany., Camba T; Department of Applied Mathematics II, University of Vigo, Vigo, Galicia, Spain.; BioProcess Engineering Group, IIM-CSIC, Vigo, Galicia, Spain., Dudkin E; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Egert J; Faculty of Medicine and Medical Center, Institute of Medical Biometry and Statistics, University of Freiburg, Freiburg, Germany.; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany., Fröhlich F; Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA., Fuhrmann L; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Hauber AL; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Institute of Physics, University of Freiburg, Freiburg, Germany., Kemmer S; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Institute of Physics, University of Freiburg, Freiburg, Germany., Lakrisenko P; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Loos C; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany.; Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Merkt S; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Müller W; Heidelberg Institute for Theoretical Studies (HITS gGmbH), Heidelberg, Germany., Pathirana D; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Raimúndez E; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany.; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Refisch L; Faculty of Medicine and Medical Center, Institute of Medical Biometry and Statistics, University of Freiburg, Freiburg, Germany.; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany., Rosenblatt M; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Institute of Physics, University of Freiburg, Freiburg, Germany., Stapor PL; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Städter P; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Wang D; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Wieland FG; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Institute of Physics, University of Freiburg, Freiburg, Germany., Banga JR; BioProcess Engineering Group, IIM-CSIC, Vigo, Galicia, Spain., Timmer J; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Institute of Physics, University of Freiburg, Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany., Villaverde AF; BioProcess Engineering Group, IIM-CSIC, Vigo, Galicia, Spain., Sahle S; BioQUANT/COS, Heidelberg University, Heidelberg, Germany., Kreutz C; Faculty of Medicine and Medical Center, Institute of Medical Biometry and Statistics, University of Freiburg, Freiburg, Germany.; Freiburg Center for Data Analysis and Modeling (FDM), University of Freiburg, Freiburg, Germany.; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Freiburg, Germany., Hasenauer J; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany.; Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany., Weindl D; Institute of Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany.

المصدر: PLoS computational biology [PLoS Comput Biol] 2021 Jan 26; Vol. 17 (1), pp. e1008646. Date of Electronic Publication: 2021 Jan 26 (Print Publication: 2021).

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Programming Languages*, Systems Biology/*methods, Algorithms ; Databases, Factual ; Models, Biological ; Models, Statistical ; Reproducibility of Results

المؤلفون: Keating SM; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK.; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Waltemath D; Medical Informatics, Institute for Community Health, University Medicine Greifswald, Greifswald, Germany., König M; Institute for Theoretical Biology, Humboldt-University Berlin, Berlin, Germany., Zhang F; Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Dräger A; Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Institute for Biomedical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany.; German Center for Infection Research (DZIF), Tübingen, Germany., Chaouiya C; Aix-Marseille Université, CNRS, Centrale Marseille, Marseille, France.; Instituto Gulbenkian de Ciência, Oeiras, Portugal., Bergmann FT; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Finney A; ANSYS UK Ltd, Milton Park, Oxfordshire, UK., Gillespie CS; School of Mathematics, Statistics and Physics, Newcastle University, Newcastle upon Tyne, UK., Helikar T; Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA., Hoops S; Biocomplexity Institute & Initiative, University of Virginia, Charlottesville, VA, USA., Malik-Sheriff RS; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK., Moodie SL; Eight Pillars Ltd, Edinburgh, UK., Moraru II; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Myers CJ; Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA., Naldi A; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France., Olivier BG; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; BioQuant/COS, Heidelberg University, Heidelberg, Germany.; SysBioLab, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands., Sahle S; BioQuant/COS, Heidelberg University, Heidelberg, Germany., Schaff JC; Applied BioMath, LLC, Concord, MA, USA., Smith LP; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.; Department of Bioengineering, University of Washington, Seattle, WA, USA., Swat MJ; Simcyp (a Certara company), Sheffield, South Yorkshire, UK., Thieffry D; Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France., Watanabe L; Department of Electrical and Computer Engineering, University of Utah, Salt Lake City, UT, USA., Wilkinson DJ; School of Mathematics, Statistics and Physics, Newcastle University, Newcastle upon Tyne, UK.; The Alan Turing Institute, British Library, London, UK., Blinov ML; Center for Cell Analysis and Modeling, UConn Health, Farmington, CT, USA., Begley K; California Institute of Technology, Pasadena, CA, USA., Faeder JR; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA., Gómez HF; Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland., Hamm TM; Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens, Institute for Biomedical Informatics (IBMI), University of Tübingen, Tübingen, Germany.; Department of Computer Science, University of Tübingen, Tübingen, Germany., Inagaki Y; Management & IT Consulting Division, Mizuho Information & Research Institute, Inc., Tokyo, Japan., Liebermeister W; Université Paris-Saclay, INRAE, MaIAGE, Jouy-en-Josas, France., Lister AL; Oxford e-Research Centre (OeRC), Department of Engineering Science, University of Oxford, Oxford, UK., Lucio D; College of Sciences, NC State University, Raleigh, NC, USA., Mjolsness E; Department of Computer Science, University of California, Irvine, CA, USA., Proctor CJ; Institute of Cellular Medicine, Newcastle University, Newcastle upon Tyne, UK., Raman K; Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology (IIT) Madras, Chennai, India.; Initiative for Biological Systems Engineering (IBSE), IIT Madras, Chennai, India.; Robert Bosch Centre for Data Science and Artificial Intelligence (RBC-DSAI), IIT Madras, Chennai, India., Rodriguez N; The Babraham Institute, Cambridge, UK., Shaffer CA; Department of Computer Science, Virginia Tech, Blacksburg, VA, USA., Shapiro BE; Department of Mathematics, California State University, Northridge, CA, USA., Stelling J; Department of Biosystems Science and Engineering, SIB Swiss Institute of Bioinformatics, ETH Zürich, Basel, Switzerland., Swainston N; Institute of Integrative Biology, University of Liverpool, Liverpool, UK., Tanimura N; Science Solutions Division, Mizuho Information & Research Institute, Inc., Tokyo, Japan., Wagner J; IBM Research Australia, Melbourne, Vic., Australia., Meier-Schellersheim M; Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Sauro HM; Department of Bioengineering, University of Washington, Seattle, WA, USA., Palsson B; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Bolouri H; Systems Immunology, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA., Kitano H; The Systems Biology Institute, Tokyo, Japan.; Okinawa Institute of Science and Technology, Okinawa, Japan., Funahashi A; Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan., Hermjakob H; European Bioinformatics Institute, European Molecular Biology Laboratory (EMBL-EBI), Hinxton, UK., Doyle JC; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA., Hucka M; Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.

مؤلفون مشاركون: SBML Level 3 Community members

المصدر: Molecular systems biology [Mol Syst Biol] 2020 Aug; Vol. 16 (8), pp. e9110.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review

بيانات الدورية: Publisher: EMBO Press Country of Publication: England NLM ID: 101235389 Publication Model: Print Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

مواضيع طبية MeSH: Systems Biology/*methods, Animals ; Humans ; Logistic Models ; Models, Biological ; Software