المؤلفون: Ziegler CGK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, Massachusetts, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Owings AH; Department of Medicine, University of Mississippi Medical Center, Jackson, Mississippi, USA., Galeas-Pena M; Department of Medicine, Section of Gastroenterology and Hepatology, Tulane University School of Medicine, New Orleans, Los Angeles, USA., Kazer SW; Program in Immunology, Harvard Medical School, Boston, Massachusetts, USA.; Division of Emergency Medicine, Boston Children's Hospital, Boston, Massachusetts, USA., Miao VN; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, Massachusetts, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Navia AW; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Tang Y; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA., Bromley JD; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Department of Microbiology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Lotfy P; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA., Sloan M; Department of Medicine, University of Mississippi Medical Center, Jackson, Mississippi, USA., Laird H; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Mississippi, USA., Williams HB; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Mississippi, USA., George M; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Drake RS; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA., Pride Y; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Mississippi, USA., Abraham GE 3rd; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, Mississippi, USA., Senitko M; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, Mississippi, USA., Robinson TO; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Mississippi, USA., Diamond G; Department of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA., Lionakis MS; Fungal Pathogenesis Section, Laboratory of Clinical Immunology and Microbiology (LCIM), National Institute of Allergy and Infectious Diseases (NIAID), Bethesda, Maryland, USA., Shalek AK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, Massachusetts, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, Massachusetts, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Program in Immunology, Harvard Medical School, Boston, Massachusetts, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.; Harvard Stem Cell Institute, Cambridge, Massachusetts, USA., Ordovas-Montanes J; Ragon Institute of MGH, MIT, and Harvard, Cambridge, Massachusetts, USA.; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.; Program in Immunology, Harvard Medical School, Boston, Massachusetts, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA.; Harvard Stem Cell Institute, Cambridge, Massachusetts, USA., Horwitz BH; Program in Immunology, Harvard Medical School, Boston, Massachusetts, USA.; Division of Emergency Medicine, Boston Children's Hospital, Boston, Massachusetts, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA., Glover SC; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, Mississippi, USA.; Center for Immunology and Microbial Research, Department of Cell & Molecular Biology, University of Mississippi Medical Center, Jackson, Mississippi, USA.

المصدر: Microbiology spectrum [Microbiol Spectr] 2024 Jun 04; Vol. 12 (6), pp. e0351623. Date of Electronic Publication: 2024 Apr 30.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

مواضيع طبية MeSH: Interleukin-17*/metabolism , Interleukin-17*/genetics , Interleukin-17*/immunology , COVID-19*/immunology , Coinfection*/immunology , Coinfection*/microbiology , Coinfection*/virology , Interferon Type I*/metabolism , Interferon Type I*/immunology , SARS-CoV-2*/immunology , Epithelial Cells*/immunology , Epithelial Cells*/microbiology, Humans ; Male ; Middle Aged ; Female ; Adult ; Nasal Mucosa/immunology ; Nasal Mucosa/microbiology ; Aged ; Nasopharynx/microbiology ; Candidiasis/immunology ; Candidiasis/microbiology ; Mycoses/immunology

المؤلفون: Bromley JD; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Graduate Program in Microbiology, Massachusetts Institute of Technology, Cambridge, MA, USA., Ganchua SKC; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Nyquist SK; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA., Maiello P; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA., Chao M; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Borish HJ; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Rodgers M; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Tomko J; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Kracinovsky K; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Mugahid D; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Nguyen S; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Wang D; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA., Rosenberg JM; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Klein EC; Division of Laboratory Animal Research, University of Pittsburgh, Pittsburgh, PA, USA., Gideon HP; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Floyd-O'Sullivan R; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Berger B; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA., Scanga CA; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA., Lin PL; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA.; Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, University of Pittsburgh School of Medicine., Fortune SM; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Shalek AK; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering and Science (IMES), Massachusetts Institute of Technology, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA., Flynn JL; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh PA USA.; Center for Vaccine Research, University of Pittsburgh, Pittsburgh PA USA.; Lead contact.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Dec 21. Date of Electronic Publication: 2023 Dec 21.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Winchell CG; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Nyquist SK; Program in Computational and Systems Biology, Massachusetts Institute of Technology , Cambridge, MA, USA.; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory and Department of Mathematics, MIT, Cambridge, MA, USA., Chao MC; Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA., Maiello P; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Myers AJ; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Hopkins F; Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA., Chase M; Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA., Gideon HP; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Patel KV; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Bromley JD; Program in Computational and Systems Biology, Massachusetts Institute of Technology , Cambridge, MA, USA.; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory and Department of Mathematics, MIT, Cambridge, MA, USA., Simonson AW; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Floyd-O'Sullivan R; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA., Wadsworth M; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA., Rosenberg JM; Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA.; Division of Infectious Diseases, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA., Uddin R; Division of Infectious Diseases, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA., Hughes T; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA., Kelly RJ; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Griffo J; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Tomko J; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Klein E; Division of Laboratory Animal Research, University of Pittsburgh, Pittsburgh, PA, USA., Berger B; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory and Department of Mathematics, MIT, Cambridge, MA, USA., Scanga CA; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA., Mattila J; Department of Infectious Disease and Microbiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA., Fortune SM; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, USA.; Ragon Institute of MGH, MIT, and Harvard , Cambridge, MA, USA., Shalek AK; Broad Institute, Harvard University and Massachusetts Institute of Technology , Cambridge, MA, USA.; Department of Chemistry, Institute for Medical Engineering and Science, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (MIT), Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory and Department of Mathematics, MIT, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard , Cambridge, MA, USA., Lin PL; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA.; Department of Pediatrics, Children's Hospital of Pittsburgh of the University of Pittsburgh Medical Center, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Flynn JL; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.; Center for Vaccine Research, University of Pittsburgh School of Medicine , Pittsburgh, PA, USA.

المصدر: The Journal of experimental medicine [J Exp Med] 2023 Dec 04; Vol. 220 (12). Date of Electronic Publication: 2023 Oct 16.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Rockefeller University Press Country of Publication: United States NLM ID: 2985109R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1540-9538 (Electronic) Linking ISSN: 00221007 NLM ISO Abbreviation: J Exp Med Subsets: MEDLINE

مواضيع طبية MeSH: Tuberculosis*/microbiology , Mycobacterium tuberculosis*, Animals ; Macaca ; CD8-Positive T-Lymphocytes ; Granuloma ; CD4-Positive T-Lymphocytes

المؤلفون: Peters JM, Irvine EB, Rosenberg JM, Wadsworth MH, Hughes TK, Sutton M, Nyquist SK, Bromley JD, Mondal R, Roederer M, Seder RA, Darrah PA, Alter G, Flynn JL, Shalek AK, Fortune SM, Bryson BD

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 18. Date of Electronic Publication: 2023 Jul 18.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Ziegler CGK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Owings AH; Department of Medicine, University of Mississippi Medical Center, Jackson, MS, USA., Miao VN; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Navia AW; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA., Tang Y; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA, USA., Bromley JD; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Microbiology, Massachusetts Institute of Technology, Cambridge, MA, USA., Lotfy P; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA, USA., Sloan M; Department of Medicine, University of Mississippi Medical Center, Jackson, MS, USA., Laird H; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS, USA., Williams HB; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS, USA., George M; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Drake RS; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Pride Y; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS, USA., Abraham GE 3rd; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS, USA., Senitko M; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS, USA., Robinson TO; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS, USA., Lionakis MS; Fungal Pathogenesis Section, Laboratory of Clinical Immunology and Microbiology (LCIM), National Institute of Allergy and Infectious Diseases (NIAID), Bethesda, MD, USA., Shalek AK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Program in Immunology, Harvard Medical School, Boston, MA, USA.; Harvard Stem Cell Institute, Cambridge, MA, USA., Ordovas-Montanes J; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA, USA.; Program in Immunology, Harvard Medical School, Boston, MA, USA.; Harvard Stem Cell Institute, Cambridge, MA, USA., Horwitz BH; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA, USA.; Program in Immunology, Harvard Medical School, Boston, MA, USA.; Division of Emergency Medicine, Boston Children's Hospital, Boston, MA, USA., Glover SC; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS, USA.; Center for Immunology and Microbial Research, Department of Cell & Molecular Biology, University of Mississippi Medical Center, Jackson, MS, USA.

المصدر: MedRxiv : the preprint server for health sciences [medRxiv] 2022 Oct 26. Date of Electronic Publication: 2022 Oct 26.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

المؤلفون: Jaiswal S; Department of Microbiology and Physiological Systems, Universityof Massachusetts Chan Medical School, Worcester, MA, USA., Nyquist SK; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Boyce S; Department of Microbiology and Physiological Systems, Universityof Massachusetts Chan Medical School, Worcester, MA, USA., Jivanjee T; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Ibrahim S; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Bromley JD; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Microbiology Graduate Program, Massachusetts Institute of Technology, Cambridge, MA, USA., Gatter GJ; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gideon H; Department of Microbiology and Molecular Genetics and Center for Vaccine Research, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Patel K; Department of Microbiology and Molecular Genetics and Center for Vaccine Research, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Ganchua SK; Department of Microbiology and Molecular Genetics and Center for Vaccine Research, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Berger B; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA., Fortune SM; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Ragon Institute of MGH, MIT and Harvard, Boston, MA, USA., Flynn JL; Department of Microbiology and Molecular Genetics and Center for Vaccine Research, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA., Shalek AK; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Ragon Institute of MGH, MIT and Harvard, Boston, MA, USA.; Koch Institute for Integrative Cancer Research, MIT, Cambridge, MA, USA., Behar SM; Department of Microbiology and Physiological Systems, Universityof Massachusetts Chan Medical School, Worcester, MA, USA. samuel.behar@umassmed.edu.

المصدر: BMC genomics [BMC Genomics] 2022 Sep 12; Vol. 23 (1), pp. 647. Date of Electronic Publication: 2022 Sep 12.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

مواضيع طبية MeSH: Genome* , Mycobacterium tuberculosis*/genetics, Animals ; Genomics ; Humans ; Macaca fascicularis/genetics ; Macaca mulatta/genetics

المؤلفون: Jivanjee T; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA., Ibrahim S; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA., Nyquist SK; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA., Gatter GJ; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA., Bromley JD; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA.; Microbiology Graduate Program, Massachusetts Institute of Technology, Cambridge, MA, USA., Jaiswal S; Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA, USA., Berger B; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Behar SM; Department of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, MA, USA., Love JC; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. clove@mit.edu.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA. clove@mit.edu.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA. clove@mit.edu.; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. clove@mit.edu., Shalek AK; Institute for Medical Engineering & Science and Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, USA. shalek@mit.edu.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. shalek@mit.edu.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA, USA. shalek@mit.edu.; Broad Institute of MIT and Harvard, Cambridge, MA, Massachusetts Institute of Technology, Cambridge, MA, USA. shalek@mit.edu.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. shalek@mit.edu.

المصدر: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2574, pp. 159-182.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

مواضيع طبية MeSH: T-Lymphocytes* , Transcriptome*, Receptors, Antigen, T-Cell/genetics ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods

المؤلفون: Ziegler CGK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA 02138, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Miao VN; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Owings AH; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Navia AW; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Tang Y; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA., Bromley JD; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Microbiology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Lotfy P; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA., Sloan M; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Laird H; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Williams HB; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., George M; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Drake RS; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Christian T; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Parker A; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Sindel CB; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Burger MW; Obstetrics and Gynecology, University of Mississippi Medical Center, Jackson, MS 39216, USA., Pride Y; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Hasan M; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Abraham GE 3rd; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Senitko M; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Robinson TO; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Shalek AK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA 02138, USA; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA. Electronic address: shalek@mit.edu., Glover SC; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA. Electronic address: scglover@umc.edu., Horwitz BH; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA; Division of Emergency Medicine, Boston Children's Hospital, Boston, MA 02115, USA; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: bruce.horwitz@childrens.harvard.edu., Ordovas-Montanes J; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA. Electronic address: jose.ordovas-montanes@childrens.harvard.edu.

المصدر: Cell [Cell] 2021 Sep 02; Vol. 184 (18), pp. 4713-4733.e22. Date of Electronic Publication: 2021 Jul 23.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

مواضيع طبية MeSH: Immunity* , Severity of Illness Index*, COVID-19/*immunology , COVID-19/*virology , SARS-CoV-2/*physiology, Adult ; Aged ; Bystander Effect ; COVID-19/genetics ; Cohort Studies ; Female ; Humans ; Male ; Middle Aged ; Nasopharynx/pathology ; Nasopharynx/virology ; RNA, Viral/analysis ; RNA, Viral/genetics ; Respiratory Mucosa/pathology ; Respiratory Mucosa/virology ; Transcription, Genetic ; Viral Load

المؤلفون: Ziegler CGK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA 02138, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Miao VN; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Owings AH; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Navia AW; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Tang Y; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA., Bromley JD; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Microbiology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Lotfy P; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA., Sloan M; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Laird H; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Williams HB; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., George M; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Drake RS; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Christian T; Department of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Parker A; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Sindel CB; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Burger MW; Obstetrics and Gynecology, University of Mississippi Medical Center, Jackson, MS 39216, USA., Pride Y; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Hasan M; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Abraham GE 3rd; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Senitko M; Division of Pulmonary, Critical Care, and Sleep Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA., Robinson TO; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Shalek AK; Program in Health Sciences & Technology, Harvard Medical School & MIT, Boston, MA 02115, USA.; Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Harvard Graduate Program in Biophysics, Harvard University, Cambridge, MA 02138, USA.; Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA.; Harvard Stem Cell Institute, Cambridge, MA 02138, USA., Glover SC; Division of Digestive Diseases, University of Mississippi Medical Center, Jackson, MS 39216, USA., Horwitz BH; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA.; Division of Emergency Medicine, Boston Children's Hospital, Boston, MA 02115, USA.; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA., Ordovas-Montanes J; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital, Boston, MA 02115, USA.; Program in Immunology, Harvard Medical School, Boston, MA 02115, USA.; Harvard Stem Cell Institute, Cambridge, MA 02138, USA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2021 Feb 20. Date of Electronic Publication: 2021 Feb 20.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE