المؤلفون: Mahout M; Université Paris-Saclay, CNRS, Laboratoire Interdisciplinaire des Sciences du Numérique, 91405, Orsay, France., Carlson RP; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Microbiology and Immunology, Montana State University, Bozeman, MT, 59717, USA., Simon L; Bordeaux-INP, Université Bordeaux, LaBRI, 33405, Talence Cedex, France., Peres S; UMR CNRS 5558, Laboratoire de Biométrie et de Biologie Évolutive, Université Claude Bernard Lyon 1, 69100, Villeurbanne, France. sabine.peres@univ-lyon1.fr.; INRIA Lyon Centre, 69100, Villeurbanne, France. sabine.peres@univ-lyon1.fr.

المصدر: NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Apr 02; Vol. 10 (1), pp. 34. Date of Electronic Publication: 2024 Apr 02.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms* , Wound Infection*, Humans ; Models, Biological ; Metabolic Networks and Pathways/genetics ; Genome

المؤلفون: Khaleque HN; Commonwealth Scientific and Industrial Research Organisation (CSIRO) Environment, 147 Underwood Avenue, Floreat, WA, Australia; Synthetic Biology Future Science Platform, CSIRO, Canberra 2601, ACT, Australia; School of Science, Edith Cowan University, Joondalup, WA, Australia. Electronic address: himelnahreen.khaleque@csiro.au., Nazem-Bokaee H; Synthetic Biology Future Science Platform, CSIRO, Canberra 2601, ACT, Australia; Australian National Herbarium, National Research Collections Australia, NCMI, CSIRO, Canberra 2601, ACT, Australia. Electronic address: hadi.nazem-bokaee@csiro.au., Gumulya Y; Commonwealth Scientific and Industrial Research Organisation (CSIRO) Environment, 147 Underwood Avenue, Floreat, WA, Australia; Synthetic Biology Future Science Platform, CSIRO, Canberra 2601, ACT, Australia; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology, Translational Research Institute, Woolloongabba, Queensland, Australia. Electronic address: yosephine.gumulya@qut.edu.au., Carlson RP; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA. Electronic address: rossc@montana.edu., Kaksonen AH; Commonwealth Scientific and Industrial Research Organisation (CSIRO) Environment, 147 Underwood Avenue, Floreat, WA, Australia; Synthetic Biology Future Science Platform, CSIRO, Canberra 2601, ACT, Australia. Electronic address: anna.kaksonen@csiro.au.

المصدر: Research in microbiology [Res Microbiol] 2024 Jan-Feb; Vol. 175 (1-2), pp. 104115. Date of Electronic Publication: 2023 Aug 10.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Country of Publication: France NLM ID: 8907468 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1769-7123 (Electronic) Linking ISSN: 09232508 NLM ISO Abbreviation: Res Microbiol Subsets: MEDLINE

مواضيع طبية MeSH: Trehalose*/metabolism , Acidithiobacillus*/genetics , Acidithiobacillus*/metabolism, Bacteria/metabolism ; Iron/metabolism ; Nitrogen/metabolism

SCR Organism: Acidithiobacillus ferrooxidans

المؤلفون: Beck AE; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA.; Department of Biological and Environmental Sciences, Carroll Collegegrid.253718.a, Helena, Montana, USA., Pintar K; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Schepens D; Department of Mathematics and Statistics, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Schrammeck A; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Johnson T; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Bleem A; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Du M; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Harcombe WR; Department of Ecology, Evolution, and Behavior, University of Minnesotagrid.17635.36, St. Paul, Minnesota, USA., Bernstein HC; Norwegian College of Fisheries Sciences & The Arctic Centre for Sustainable Energy, UiT-The Arctic University of Norway, Tromsø, Norway., Heys JJ; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Gedeon T; Department of Mathematics and Statistics, Montana State Universitygrid.41891.35, Bozeman, Montana, USA., Carlson RP; Department of Chemical and Biological Engineering, Montana State Universitygrid.41891.35, Bozeman, Montana, USA.

المصدر: MSystems [mSystems] 2022 Aug 30; Vol. 7 (4), pp. e0005122. Date of Electronic Publication: 2022 Jun 28.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2379-5077 (Print) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems

مواضيع طبية MeSH: Microbial Consortia* , Ecosystem*, Biomass ; Lactic Acid/metabolism ; Acetates

المؤلفون: Pulukkody AC; Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois, United States of America., Yung YP; Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois, United States of America., Donnarumma F; Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana, United States of America., Murray KK; Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana, United States of America., Carlson RP; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, Montana, United States of America., Hanley L; Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois, United States of America.

المصدر: PloS one [PLoS One] 2021 Jul 22; Vol. 16 (7), pp. e0250911. Date of Electronic Publication: 2021 Jul 22 (Print Publication: 2021).

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

مواضيع طبية MeSH: Lasers, Solid-State*, Biofilms/*radiation effects , Proteome/*analysis , Pseudomonas aeruginosa/*metabolism , Specimen Handling/*methods, Bacterial Proteins/metabolism ; Biofilms/growth & development ; Chromatography, High Pressure Liquid ; Polycarboxylate Cement/chemistry ; Proteomics/methods ; Pseudomonas aeruginosa/physiology ; Specimen Handling/instrumentation ; Tandem Mass Spectrometry

المؤلفون: Hunt KA; Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA.; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA., Mallette ND; Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA.; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA., Peyton BM; Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA.; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA., Carlson RP; Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA.; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA.

المصدر: Journal of fungi (Basel, Switzerland) [J Fungi (Basel)] 2021 May 29; Vol. 7 (6). Date of Electronic Publication: 2021 May 29.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101671827 Publication Model: Electronic Cited Medium: Internet ISSN: 2309-608X (Electronic) Linking ISSN: 2309608X NLM ISO Abbreviation: J Fungi (Basel) Subsets: PubMed not MEDLINE

المؤلفون: Hammarlund SP; Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, USA.; BioTechnology Institute, University of Minnesota, St. Paul, MN, USA., Gedeon T; Department of Mathematical Sciences, Montana State University, Bozeman, MT, USA., Carlson RP; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA., Harcombe WR; Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN, USA. harcombe@umn.edu.; BioTechnology Institute, University of Minnesota, St. Paul, MN, USA. harcombe@umn.edu.

المصدر: Nature communications [Nat Commun] 2021 Jan 27; Vol. 12 (1), pp. 619. Date of Electronic Publication: 2021 Jan 27.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Microbiota*, Escherichia coli/*physiology , Salmonella enterica/*physiology, Amino Acids/biosynthesis ; Models, Biological ; Salmonella enterica/growth & development

المؤلفون: McGill SL; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, MT, 59717, USA.; Department of Microbiology and Immunology, Montana State University, Bozeman, MT, 59717, USA., Yung Y; Department of Chemistry, University of Illinois at Chicago, Chicago, IL, 60607, USA., Hunt KA; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, MT, 59717, USA.; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, 98115, USA., Henson MA; Department of Chemical Engineering, Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA, 01003, USA., Hanley L; Department of Chemistry, University of Illinois at Chicago, Chicago, IL, 60607, USA., Carlson RP; Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, MT, 59717, USA. rossc@montana.edu.; Department of Microbiology and Immunology, Montana State University, Bozeman, MT, 59717, USA. rossc@montana.edu.

المصدر: Scientific reports [Sci Rep] 2021 Jan 14; Vol. 11 (1), pp. 1457. Date of Electronic Publication: 2021 Jan 14.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

مواضيع طبية MeSH: Models, Biological*, Bacterial Proteins/*metabolism , Pseudomonas aeruginosa/*metabolism, Humans ; Pseudomonas aeruginosa/pathogenicity

المؤلفون: Park H; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT, USA.; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA.; Department of Engineering and Technology, University of North Alabama, Florence, AL, USA., Patel A; Department of Chemical Engineering and Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA, USA., Hunt KA; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT, USA.; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA.; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, USA., Henson MA; Department of Chemical Engineering and Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA, USA., Carlson RP; Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT, USA. rossc@montana.edu.; Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA. rossc@montana.edu.

المصدر: NPJ biofilms and microbiomes [NPJ Biofilms Microbiomes] 2020 Dec 02; Vol. 6 (1), pp. 59. Date of Electronic Publication: 2020 Dec 02.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 101666944 Publication Model: Electronic Cited Medium: Internet ISSN: 2055-5008 (Electronic) Linking ISSN: 20555008 NLM ISO Abbreviation: NPJ Biofilms Microbiomes Subsets: MEDLINE

مواضيع طبية MeSH: Microbial Consortia*, Cellobiose/*metabolism , Clostridiales/*growth & development , Escherichia coli/*growth & development , Plankton/*microbiology, Amino Acids/metabolism ; Biofuels ; Biomass ; Clostridiales/metabolism ; Escherichia coli/metabolism ; Peptides/metabolism

SCR Organism: Lachnoclostridium phytofermentans

المؤلفون: Hůlková M; Research Centre for Toxic Compounds in the Environment, Masaryk University Brnob, Kamenice, Brno, Czech Republic; Institute of Botany, Academy of Sciences of the Czech Republic, Lidická 25/27, 602 00, Brno, Czech Republic; Department of Chemical and Biological Engineering, Center for Biofilm Engineering and Thermal Biology Institute, Montana State University, Bozeman, MT, 59717, USA. Electronic address: marketahulkova.1@gmail.com., Soukupová J; Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University in Olomouc, Šlechtitelů 27, 783 71, Olomouc, Czech Republic. Electronic address: jana.soukupova@upol.cz., Carlson RP; Department of Chemical and Biological Engineering, Center for Biofilm Engineering and Thermal Biology Institute, Montana State University, Bozeman, MT, 59717, USA. Electronic address: rossc@montana.edu., Maršálek B; Research Centre for Toxic Compounds in the Environment, Masaryk University Brnob, Kamenice, Brno, Czech Republic; Institute of Botany, Academy of Sciences of the Czech Republic, Lidická 25/27, 602 00, Brno, Czech Republic. Electronic address: blahoslav.marsalek@ibot.cas.cz.

المصدر: Colloids and surfaces. B, Biointerfaces [Colloids Surf B Biointerfaces] 2020 Apr 24; Vol. 192, pp. 111027. Date of Electronic Publication: 2020 Apr 24.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 9315133 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-4367 (Electronic) Linking ISSN: 09277765 NLM ISO Abbreviation: Colloids Surf B Biointerfaces Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Park H; Department of Chemical and Biological Engineering, Montana State University, Bozeman, USA.; Center for Biofilm Engineering, Montana State University, Bozeman, USA., McGill SL; Department of Microbiology and Immunology, Montana State University, Bozeman, USA.; Center for Biofilm Engineering, Montana State University, Bozeman, USA., Arnold AD; Department of Microbiology and Immunology, Montana State University, Bozeman, USA.; Center for Biofilm Engineering, Montana State University, Bozeman, USA., Carlson RP; Department of Chemical and Biological Engineering, Montana State University, Bozeman, USA. rossc@montana.edu.; Department of Microbiology and Immunology, Montana State University, Bozeman, USA. rossc@montana.edu.; Center for Biofilm Engineering, Montana State University, Bozeman, USA. rossc@montana.edu.

المصدر: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2020 Feb; Vol. 77 (3), pp. 395-413. Date of Electronic Publication: 2019 Nov 25.

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Springer Country of Publication: Switzerland NLM ID: 9705402 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1420-9071 (Electronic) Linking ISSN: 1420682X NLM ISO Abbreviation: Cell Mol Life Sci Subsets: MEDLINE

مواضيع طبية MeSH: Carbon/*metabolism , Catabolite Repression/*physiology , Pseudomonadaceae/*metabolism, Escherichia coli/metabolism ; Glucose/metabolism ; Humans ; Phenotype