المؤلفون: Monique A.J. van Eijndhoven, Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Michael Hackenberg, D. Michiel Pegtel

المصدر: STAR Protocols, Vol 4, Iss 4, Pp 102645- (2023)

مصطلحات موضوعية: Bioinformatics, Genetics, Genomics, Biotechnology and Bioengineering, Science (General), Q1-390

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666166723006123; https://doaj.org/toc/2666-1667

URL الوصول: https://doaj.org/article/f333a2f9af6b43af94de6e9a12fc66dd

المؤلفون: Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard R.G.D. Haas, Irene V. Bijnsdorp, Rui Sun, Liang Yue, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. Van Houdt, Tessa Y.S. Le Large, Jacqueline Cloos, Anna Wojtuszkiewicz, Danijela Koppers-Lalic, Franziska Böttger, Chantal Scheepbouwer, Ruud H. Brakenhoff, Geert J.L.H. van Leenders, Jan N.M. Ijzermans, John W.M. Martens, Renske D.M. Steenbergen, Nicole C. Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze S. Lee, Serene J.Y. Yeow, Syed M.F. Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Shaozheng Dai, Wei Liu, Tian Lu, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Qin Yang, Yifan Meng, Cong Lu, Jiang Zhu, Jin'e Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chenhuan Yu, Huazhong Ying, Tony K. Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shi'ang Huang, Zhihua Tao, Narayanan G. Iyer, Shuigeng Zhou, Wenguang Shao, Henry Lam, Ding Ma, Jiafu Ji, Oi L. Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jimenez, Tiannan Guo

المصدر: Genomics, Proteomics & Bioinformatics, Vol 18, Iss 2, Pp 104-119 (2020)

مصطلحات موضوعية: Data-independent acquisition, Parallel reaction monitoring, Spectral library, Prostate cancer, Diffuse large B cell lymphoma, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1672022920300930; https://doaj.org/toc/1672-0229

URL الوصول: https://doaj.org/article/272efeb3b0fc4ac9a3ba92b579d82fb4

المؤلفون: Chantal Scheepbouwer, Sandra Meyer, Maroeska J Burggraaf, Jithin Jose, Carla F M Molthoff

المصدر: PLoS ONE, Vol 11, Iss 8, p e0161284 (2016)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC4988778?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/1871e5db40924b9ba33203425cebec03

المؤلفون: Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Cristina Gomez-Martin, Heleen Verschueren, Monique van Eijndhoven, Laurine E. Wedekind, Stavros Giannoukakos, Nathalie Hijmering, Lisa Gasparotto, Hilde T. van der Galien, Roos S. van Rijn, Eleonora Aronica, Robby Kibbelaar, Vivi M. Heine, Pieter Wesseling, David P. Noske, W. Peter Vandertop, Daphne de Jong, D. Michiel Pegtel, Michael Hackenberg, Tom Wurdinger, Alan Gerber, Danijela Koppers-Lalic

المساهمون: Pathology, AII - Inflammatory diseases, ANS - Cellular & Molecular Mechanisms, Child and Adolescent Psychiatry & Psychosocial Care, Neurosurgery, ANS - Neurovascular Disorders, ANS - Systems & Network Neuroscience, CCA - Cancer Treatment and Quality of Life, Human genetics, Amsterdam Neuroscience - Cellular & Molecular Mechanisms, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, AII - Cancer immunology, CCA - Cancer biology and immunology, CCA - Imaging and biomarkers, Amsterdam Neuroscience - Neurovascular Disorders, Amsterdam Neuroscience - Systems & Network Neuroscience, AII - Infectious diseases

المصدر: Genes & development, 37(5-6), 243-257. Cold Spring Harbor Laboratory Press
Scheepbouwer, C, Aparicio-Puerta, E, Gomez-Martin, C, Verschueren, H, van Eijndhoven, M, Wedekind, L E, Giannoukakos, S, Hijmering, N, Gasparotto, L, van der Galien, H T, van Rijn, R S, Aronica, E, Kibbelaar, R, Heine, V M, Wesseling, P, Noske, D P, Vandertop, W P, de Jong, D, Pegtel, D M, Hackenberg, M, Wurdinger, T, Gerber, A & Koppers-Lalic, D 2023, ' ALL-tRNAseq enables robust tRNA profiling in tissue samples ', Genes and Development, vol. 37, no. 5-6, pp. 243-257 . https://doi.org/10.1101/gad.350233.122
Genes and Development, 37(5-6), 243-257. Cold Spring Harbor Laboratory Press

مصطلحات موضوعية: tissue samples, Genetics, cancer, high-throughput sequencing, transfer RNA, Developmental Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d1b9244df37517aa537b551f1c722c3d
http://www.scopus.com/inward/record.url?scp=85151574209&partnerID=8YFLogxK

المؤلفون: Chantal Scheepbouwer, Michael Hackenberg, Monique A J van Eijndhoven, Alan Gerber, Michiel Pegtel, Cristina Gómez-Martín

المساهمون: Neurosurgery, Pathology, AII - Infectious diseases, CCA - Cancer biology and immunology, CCA - Imaging and biomarkers

المصدر: Nucleic Acids Research. Oxford University Press
Scheepbouwer, C, Hackenberg, M, van Eijndhoven, M A J, Gerber, A, Pegtel, M & Gómez-Martín, C 2023, ' NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods ', Nucleic Acids Research, vol. 51, no. W1, pp. W372-W378 . https://doi.org/10.1093/nar/gkad429

مصطلحات موضوعية: Genetics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f06583959c8a6414751d3f5444ae38b8
https://research.vumc.nl/en/publications/4dbc28a1-b49c-41d1-b0c6-dfd8d63fffa1

المؤلفون: Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg

المساهمون: Pathology, Neurosurgery, AII - Infectious diseases

المصدر: Aparicio-Puerta, E, Gómez-Martín, C, Giannoukakos, S, Medina, J M, Scheepbouwer, C, García-Moreno, A, Carmona-Saez, P, Fromm, B, Pegtel, M, Keller, A, Marchal, J A & Hackenberg, M 2022, ' sRNAbench and sRNAtoolbox 2022 update : accurate miRNA and sncRNA profiling for model and non-model organisms ', Nucleic Acids Research, vol. 50, no. W1, pp. W710-W717 . https://doi.org/10.1093/nar/gkac363
Nucleic Acids Research, 50(W1), W710-W717. Oxford University Press
Digibug. Repositorio Institucional de la Universidad de Granada
instname

مصطلحات موضوعية: MicroRNAs, Databases, Factual, Sequence Analysis, RNA, Genetics, Animals, RNA, Small Untranslated, Molecular Sequence Annotation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c8f5c63c2561f5acff5d45a4af4dd1c6
https://pubmed.ncbi.nlm.nih.gov/35556129

المؤلفون: Tian Lu, Shu Zheng, Xue Cai, Qin Yang, Geert J.L.H. van Leenders, Sangeeta Mantoo, Henry H N Lam, Chantal Scheepbouwer, Jin’e Zheng, Danijela Koppers-Lalic, Xiao Liang, Yi Zhu, Shaozheng Dai, Renske D.M. Steenbergen, Sai Lou, Connie R. Jimenez, Anna Wojtuszkiewicz, Serene Jie Yi Yeow, Tony Kiat Hon Lim, Wenguang Shao, Franziska Böttger, Kailun Xu, Zhihua Tao, Xiao Yi, Nicole Cornelia Theodora van Grieken, Wei Liu, Chenhuan Yu, Yue Zhou, Cong Lu, Mo Hu, Huazhong Ying, Tiansheng Zhu, Liang Yue, Tiannan Guo, Richard R Goeij De Haas, Shiang Huang, Rui Sun, Yue Xuan, Narayanan G. Iyer, Shuigeng Zhou, Huanhuan Gao, Jianmin Wu, John W.M. Martens, Jiang Zhu, Chao Xu, Tim Schelfhorst, Yibei Dai, Sander R. Piersma, Tessa Y S Le Large, Sathiyamoorthy Selvarajan, Sze S. Lee, Xiaofei Gao, Yingkuan Shao, Jiafu Ji, Nan Xiang, Zhongzhi Luan, Winan J. van Houdt, Syed Muhammad Fahmy Alkaff, Oi Lian Kon, Ruud H. Brakenhoff, X D Teng, Yifan Meng, Zhicheng Wu, Ding Ma, Jan N. M. IJzermans, Man Wang, Peng Wu, Yaoting Sun, Jacqueline Cloos, Guan Ruan, Qiushi Zhang, Thang V. Pham, Xi Zheng, Irene V. Bijnsdorp, Bo Wang, Ruedi Aebersold

المساهمون: Medical oncology laboratory, CCA - Imaging and biomarkers, VU University medical center, Urology, Surgery, Hematology laboratory, Neurosurgery, Otolaryngology / Head & Neck Surgery, Pathology, AGEM - Re-generation and cancer of the digestive system, Amsterdam Neuroscience - Neurodegeneration, Medical Oncology, Graduate School, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism

المصدر: Zhu, T, Zhu, Y, Xuan, Y, Gao, H, Cai, X, Piersma, S R, Pham, T V, Schelfhorst, T, Haas, R R G D, Bijnsdorp, I V, Sun, R, Yue, L, Ruan, G, Zhang, Q, Hu, M, Zhou, Y, van Houdt, W J, le Large, T Y S, Cloos, J, Wojtuszkiewicz, A, Koppers-Lalic, D, Böttger, F, Scheepbouwer, C, Brakenhoff, R H, van Leenders, G J L H, Ijzermans, J N M, Martens, J W M, Steenbergen, R D M, Grieken, N C, Selvarajan, S, Mantoo, S, Lee, S S, Yeow, S J Y, Alkaff, S M F, Xiang, N, Sun, Y, Yi, X, Dai, S, Liu, W, Lu, T, Wu, Z, Liang, X, Wang, M, Shao, Y, Zheng, X, Xu, K, Yang, Q, Meng, Y, Lu, C, Zhu, J, Zheng, J, Wang, B, Lou, S, Dai, Y, Xu, C, Yu, C, Ying, H, Lim, T K, Wu, J, Gao, X, Luan, Z, Teng, X, Wu, P, Huang, S, Tao, Z, Iyer, N G, Zhou, S, Shao, W, Lam, H, Ma, D, Ji, J, Kon, O L, Zheng, S, Aebersold, R, Jimenez, C R & Guo, T 2020, ' DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery ', Genomics, Proteomics and Bioinformatics, vol. 18, no. 2, pp. 104-119 . https://doi.org/10.1016/j.gpb.2019.11.008
Genomics, Proteomics and Bioinformatics, 18(2), 104-119. Beijing Genomics Institute
Genomics Proteomics & Bioinformatics, 18(2), 104-119. Beijing Genomics Institute
Genomics, Proteomics and Bioinformatics, 18 (2)
Genomics, Proteomics & Bioinformatics, Vol 18, Iss 2, Pp 104-119 (2020)
Genomics, Proteomics & Bioinformatics
Genomics, proteomics & bioinformatics / Beijing Genomics Institute, 18(2), 104-119. Beijing Genomics Institute

مصطلحات موضوعية: Male, Proteomics, Protein mass spectrometry, Protein biomarkers, Computer science, Data-independent acquisition, Parallel reaction monitoring, Spectral library, Prostate cancer, Diffuse large B cell lymphoma, Computational biology, Biochemistry, Mass Spectrometry, 03 medical and health sciences, 0302 clinical medicine, Cell Line, Tumor, Healthy control, Biomarkers, Tumor, Genetics, Humans, Biomarker discovery, lcsh:QH301-705.5, Molecular Biology, Original Research, 030304 developmental biology, 0303 health sciences, Plasma samples, Selected reaction monitoring, Prostatic Neoplasms, Reproducibility of Results, Neoplasm Proteins, Computational Mathematics, Targeted proteomics, lcsh:Biology (General), Lymphoma, Large B-Cell, Diffuse, Peptides, 030217 neurology & neurosurgery

وصف الملف: application/pdf; application/application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::097cb1215ade35fd835d3115a530cb8a
https://doi.org/10.1016/j.gpb.2019.11.008

المؤلفون: Ernesto Aparicio-Puerta, Bosch L, Michael Hackenberg, Cristina Gómez-Martín, Bradley E, Esther E.E. Drees, Chantal Scheepbouwer, D.M. Pegtel, van Eijndhoven M, José María Medina

مصطلحات موضوعية: chemistry.chemical_classification, Messenger RNA, Small RNA, IsomiR, chemistry, HEK 293 cells, microRNA, RNA, Nucleotide, Cell free, Computational biology, Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2ea2845cc3ae7806ac887d61989ad847
https://doi.org/10.1101/2021.05.04.442244

المؤلفون: Chantal Scheepbouwer, Marlinda Adham, Lisa Beckers, Jan R.T. van Weering, Sandra A. W. M. Verkuijlen, Putri W. Novianti, Jaap M. Middeldorp, Octavia Ramayanti, Danijela Koppers-Lalic, D.M. Pegtel, Debora Martorelli, Branislav Misovic

المساهمون: Functional Genomics, CCA - Cancer biology and immunology, Pathology, Neurosurgery, Human genetics, Amsterdam Neuroscience - Cellular & Molecular Mechanisms, AII - Infectious diseases

المصدر: Ramayanti, O, Verkuijlen, S A W M, Novianti, P, Scheepbouwer, C, Misovic, B, Koppers-Lalic, D, van Weering, J, Beckers, L, Adham, M, Martorelli, D, Middeldorp, J M & Pegtel, D M 2019, ' Vesicle-bound EBV-BART13-3p miRNA in circulation distinguishes nasopharyngeal from other head and neck cancer and asymptomatic EBV-infections ', International Journal of Cancer, vol. 144, no. 10, pp. 2555-2566 . https://doi.org/10.1002/ijc.31967
International Journal of Cancer, 144(10), 2555-2566. International Union Against Cancer
International Journal of Cancer, 144(10), 2555-2566. Wiley-Liss Inc.
International Journal of Cancer

مصطلحات موضوعية: Adult, Male, Epstein-Barr Virus Infections, Herpesvirus 4, Human, Cancer Research, Small RNA, Tumor Markers and Signatures, Adolescent, Biology, medicine.disease_cause, BART‐microRNAs, Serology, Epstein–Barr virus, Extracellular Vesicles, Young Adult, 03 medical and health sciences, 0302 clinical medicine, SDG 3 - Good Health and Well-being, Nasopharynx, microRNA, Biomarkers, Tumor, medicine, otorhinolaryngologic diseases, Humans, Aged, Aged, 80 and over, nasopharyngeal carcinoma, RNA, Nasopharyngeal Neoplasms, Middle Aged, medicine.disease, MicroRNAs, stomatognathic diseases, Epstein-Barr Virus Nuclear Antigens, Oncology, Nasopharyngeal carcinoma, Head and Neck Neoplasms, tumor markers, 030220 oncology & carcinogenesis, Cancer research, RNA, Viral, Biomarker (medicine), Female, Cancer biomarkers, noninvasive diagnosis, BART-microRNAs

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5478b5e61a4b9c9f0177cfc256c546e7
https://doi.org/10.1002/ijc.31967

المؤلفون: Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard R Goeij De Haas, Irene V. Bijnsdorp, Rui Sun, Liang Yue, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. Van Houdt, T.Y.S Lelarge, J. Cloos, Anna Wojtuszkiewicz, Danijela Koppers-Lalic, Franziska Böttger, Chantal Scheepbouwer, R.H Brakenhoff, G.J.L.H. van Leenders, Jan N.M. Ijzermans, J.W.M. Martens, R.D.M. Steenbergen, N.C. Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze Sing Lee, Serene Jie Yi Yeow, Syed Muhammad Fahmy Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Shaozheng Dai, Wei Liu, Tian Lu, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Qin Yang, Yifan Meng, Cong Lu, Jiang Zhu, Jin’e Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chenhuan Yu, Huazhong Ying, Tony Kiat-hon Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shi’ang Huang, Zhihua Tao, N. Gopalakrishna Iyer, Shuigeng Zhou, Wenguang Shao, Henry Lam, Ding Ma, Jiafu Ji, Oi Lian Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jimenez, Tiannan Guo

مصطلحات موضوعية: Oncology, medicine.medical_specialty, business.industry, Colorectal cancer, Cancer, medicine.disease, Prostate cancer, Targeted mass spectrometry, Internal medicine, medicine, Adenocarcinoma, Biomarker (medicine), Data-independent acquisition, Biomarker discovery, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0efeaed59bec37bfbae8b1f7d5e11559