المؤلفون: De Meulenaere K; Department of Computer Science, Adrem Data Lab, University of Antwerp, Wilrijk, Belgium.; Department of Biomedical Sciences, Malariology Unit, Institute of Tropical Medicine, Antwerp, Belgium., Cuypers WL; Department of Computer Science, Adrem Data Lab, University of Antwerp, Wilrijk, Belgium., Gauglitz JM; Department of Computer Science, Adrem Data Lab, University of Antwerp, Wilrijk, Belgium., Guetens P; Department of Biomedical Sciences, Malariology Unit, Institute of Tropical Medicine, Antwerp, Belgium., Rosanas-Urgell A; Department of Biomedical Sciences, Malariology Unit, Institute of Tropical Medicine, Antwerp, Belgium., Laukens K; Department of Computer Science, Adrem Data Lab, University of Antwerp, Wilrijk, Belgium.; Excellence centre for Microbial Systems Technology, University of Antwerp, Wilrijk, Belgium., Cuypers B; Department of Computer Science, Adrem Data Lab, University of Antwerp, Wilrijk, Belgium.; Excellence centre for Microbial Systems Technology, University of Antwerp, Wilrijk, Belgium.

المصدر: MBio [mBio] 2024 Jan 16; Vol. 15 (1), pp. e0196723. Date of Electronic Publication: 2023 Dec 06.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE

مواضيع طبية MeSH: Parasites*/genetics , Nanopores* , Plasmodium*/genetics, Animals ; Humans ; Whole Genome Sequencing/methods ; DNA, Protozoan/genetics ; Plasmodium falciparum/genetics

المؤلفون: Van Puyvelde S; Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK. sandra.vanpuyvelde@uantwerpen.be.; Parasites and Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. sandra.vanpuyvelde@uantwerpen.be.; Laboratory of Medical Microbiology, Vaccine & Infectious Disease Institute, University of Antwerp, Antwerp, Belgium. sandra.vanpuyvelde@uantwerpen.be., de Block T; Institute of Tropical Medicine, Antwerp, Belgium., Sridhar S; Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK.; Parasites and Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Division of Infectious Disease, Massachusetts General Hospital, Boston, MA, USA.; Department of Medicine, Harvard Medical School, Boston, MA, USA., Bawn M; Quadram Institute Bioscience, Norwich, UK.; Earlham Institute, Norwich, UK.; Faculty of Biological Sciences, University of Leeds, Leeds, UK., Kingsley RA; Quadram Institute Bioscience, Norwich, UK.; School of Biological Science, University of East Anglia, Norwich, UK., Ingelbeen B; Institute of Tropical Medicine, Antwerp, Belgium.; Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands., Beale MA; Parasites and Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK., Barbé B; Institute of Tropical Medicine, Antwerp, Belgium., Jeon HJ; Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK.; International Vaccine Institute, 1 Gwanak-ro, Seoul, 08826, Republic of Korea.; Madagascar Institute for Vaccine Research, University of Antananarivo, Antananarivo, Madagascar., Mbuyi-Kalonji L; Department of Medical Biology, University Teaching Hospital of Kinshasa, Kinshasa, Democratic Republic of the Congo.; National Institute for Biomedical Research, Kinshasa, Democratic Republic of the Congo., Phoba MF; Department of Medical Biology, University Teaching Hospital of Kinshasa, Kinshasa, Democratic Republic of the Congo.; National Institute for Biomedical Research, Kinshasa, Democratic Republic of the Congo., Falay D; Department of Pediatrics, University Hospital of Kisangani, Kisangani, Democratic Republic of the Congo., Martiny D; Department of Microbiology, Laboratoire Hospitalier Universitaire de Bruxelles-Universitair Laboratorium Brussel (LHUB-ULB), Université Libre de Bruxelles (ULB), 1000, Brussels, Belgium.; Faculty of Medicine and Pharmacy, University of Mons (UMONS), 7000, Mons, Belgium., Vandenberg O; Department of Microbiology, Laboratoire Hospitalier Universitaire de Bruxelles-Universitair Laboratorium Brussel (LHUB-ULB), Université Libre de Bruxelles (ULB), 1000, Brussels, Belgium.; Division of Infection and Immunity, Faculty of Medical Sciences, University College London, London, UK., Affolabi D; Centre National Hospitalier Universitaire Hubert Koutoukou Maga, Cotonou, Benin., Rutanga JP; Institute of Tropical Medicine, Antwerp, Belgium.; College of Science and Technology, University of Rwanda, Kigali, Rwanda., Ceyssens PJ; National Reference Center for Salmonella, Unit of Human Bacterial Diseases, Sciensano, J. Wytsmanstraat 14, B-1050, Brussels, Belgium., Mattheus W; National Reference Center for Salmonella, Unit of Human Bacterial Diseases, Sciensano, J. Wytsmanstraat 14, B-1050, Brussels, Belgium., Cuypers WL; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Computer Science, University of Antwerp, Antwerp, Belgium., van der Sande MAB; Institute of Tropical Medicine, Antwerp, Belgium.; Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht University, Utrecht, the Netherlands., Park SE; International Vaccine Institute, 1 Gwanak-ro, Seoul, 08826, Republic of Korea.; Yonsei University Graduate School of Public Health, Seodaemun-gu, Seoul, 03722, Republic of Korea., Kariuki S; Kenya Medical Research Institute/Centre for Global Health Research, Kisumu, Kenya., Otieno K; Kenya Medical Research Institute/Centre for Global Health Research, Kisumu, Kenya., Lusingu JPA; National Institute for Medical Research, Tanga, Tanzania.; Center for Medical Parasitology, Department of Immunology and Microbiology, University of Copenhagen, København, Denmark., Mbwana JR; National Institute for Medical Research, Tanga, Tanzania., Adjei S; University of Health & Allied Sciences, Ho, Volta Region, Ghana., Sarfo A; University of Health & Allied Sciences, Ho, Volta Region, Ghana., Agyei SO; University of Health & Allied Sciences, Ho, Volta Region, Ghana., Asante KP; Kintampo Health Research Centre, Research and Development Division, Ghana Health Service, Kintampo North Municipality, Ho, Volta Region, Ghana., Otieno W; KEMRI/Walter Reed Project, Kombewa, Kenya., Otieno L; KEMRI/Walter Reed Project, Kombewa, Kenya., Tahita MC; Institut de Recherche en Science de la Santé, Direction Régionale du Centre-Ouest/ClinicalResearch Unit of Nanoro, Nanoro, Burkina Faso., Lompo P; Institut de Recherche en Science de la Santé, Direction Régionale du Centre-Ouest/ClinicalResearch Unit of Nanoro, Nanoro, Burkina Faso., Hoffman IF; University of North Carolina Project, Lilongwe, Malawi., Mvalo T; University of North Carolina Project, Lilongwe, Malawi.; Department of Pediatrics, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Msefula C; Malawi Liverpool Wellcome Research Programme, Kamuzu University of Health Sciences, Blantyre, Malawi., Hassan-Hanga F; Department of Paediatrics, Bayero University, Kano, Nigeria.; Aminu Kano Teaching Hospital, Kano, Nigeria., Obaro S; University of Nebraska Medical Center, Omaha, NE, USA.; International Foundation Against Infectious Diseases in Nigeria (IFAIN), Abuja, Nigeria., Mackenzie G; Medical Research Council Unit The Gambia at London School of Hygiene & Tropical Medicine, Fajara, The Gambia.; London School of Hygiene and Tropical Medicine, Keppel St, Bloomsbury, London, WC1E 7HT, UK.; Murdoch Children's Research Institute, Melbourne, VIC, Australia., Deborggraeve S; Institute of Tropical Medicine, Antwerp, Belgium., Feasey N; University of North Carolina Project, Lilongwe, Malawi.; Department of Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, UK., Marks F; Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK.; International Vaccine Institute, 1 Gwanak-ro, Seoul, 08826, Republic of Korea.; Madagascar Institute for Vaccine Research, University of Antananarivo, Antananarivo, Madagascar.; Heidelberg Institute of Global Health, University of Heidelberg, Heidelberg, Germany., MacLennan CA; The Jenner Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK.; Enteric and Diarrheal Diseases, Global Health, Bill & Melinda Gates Foundation, Seattle, WA, USA., Thomson NR; Parasites and Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; London School of Hygiene and Tropical Medicine, Keppel St, Bloomsbury, London, WC1E 7HT, UK., Jacobs J; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium., Dougan G; Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge School of Clinical Medicine, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK., Kariuki S; Centre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya., Lunguya O; Department of Medical Biology, University Teaching Hospital of Kinshasa, Kinshasa, Democratic Republic of the Congo.; National Institute for Biomedical Research, Kinshasa, Democratic Republic of the Congo.

المصدر: Nature communications [Nat Commun] 2023 Oct 23; Vol. 14 (1), pp. 6392. Date of Electronic Publication: 2023 Oct 23.

نوع المنشور: Journal Article; Review; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Salmonella Infections*/epidemiology , Salmonella typhimurium*/genetics, Humans ; Africa South of the Sahara/epidemiology ; Drug Resistance, Microbial ; Genomics

المؤلفون: Rutanga JP; College of Science and Technology, University of Rwanda, Kigali, Rwanda.; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium., de Block T; Institute of Tropical Medicine, Antwerp, Belgium., Cuypers WL; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Computer Science, University of Antwerp, Antwerp, Belgium., Cafmeyer J; Institute of Tropical Medicine, Antwerp, Belgium., Peeters M; Institute of Tropical Medicine, Antwerp, Belgium., Umumararungu E; Rwanda Biomedical Centre, Kigali, Rwanda., Ngabonziza JCS; Rwanda Biomedical Centre, Kigali, Rwanda.; Department of Clinical Biology, University of Rwanda, Kigali, Rwanda., Rucogoza A; Rwanda Biomedical Centre, Kigali, Rwanda., Vandenberg O; Department of Microbiology, Laboratoire Hospitalier Universitaire de Bruxelles (LHUB-ULB), Hôpital Erasme-Cliniques universitaires de Bruxelles, Université Libre de Bruxelles, Brussels, Belgium., Martiny D; Department of Microbiology, Laboratoire des Hôpitaux Universitaires de Bruxelles - Universitaire Laboratorium Brussel (LHUB-ULB), Brussels, Belgium.; National Reference Centre for Campylobacter, CHU Saint-Pierre, Brussels, Belgium.; Faculté de Médecine et Pharmacie, Université de Mons (UMONS), Mons, Belgium., Dusabe A; Centre Hospitalier Universtaire de Kigali (CHUK), Kigali, Rwanda., Nkubana T; Centre Hospitalier Universtaire de Kigali (CHUK), Kigali, Rwanda., Dougan G; Department of Medicine, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, United Kingdom., Muvunyi CM; College of Medicine and Health Sciences, University of Rwanda, Kigali, Rwanda., Mwikarago IE; Rwanda Biomedical Centre, Kigali, Rwanda., Jacobs J; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium., Deborggraeve S; Institute of Tropical Medicine, Antwerp, Belgium., Van Puyvelde S; Institute of Tropical Medicine, Antwerp, Belgium.; Department of Medicine, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, United Kingdom.; Wellcome Trust Sanger Institute, Hinxton, United Kingdom.; Laboratory of Medical Microbiology, Vaccine & Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.

المصدر: PLoS neglected tropical diseases [PLoS Negl Trop Dis] 2023 Jun 16; Vol. 17 (6), pp. e0011285. Date of Electronic Publication: 2023 Jun 16 (Print Publication: 2023).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101291488 Publication Model: eCollection Cited Medium: Internet ISSN: 1935-2735 (Electronic) Linking ISSN: 19352727 NLM ISO Abbreviation: PLoS Negl Trop Dis Subsets: MEDLINE

مواضيع طبية MeSH: Salmonella typhi*/genetics , Typhoid Fever*/epidemiology, Humans ; Haplotypes ; Anti-Bacterial Agents/therapeutic use ; Rwanda ; Whole Genome Sequencing ; Microbial Sensitivity Tests

المؤلفون: Cuypers WL; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium. wim.cuypers@uantwerpen.be.; Unit of Tropical Bacteriology, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium. wim.cuypers@uantwerpen.be., Meysman P; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium., Weill FX; Institut Pasteur, Université Paris Cité, Unité des bactéries pathogènes entériques, F-75015, Paris, France., Hendriksen RS; Technical University of Denmark, National Food Institute (DTU-Food), Research Group of Global Capacity Building, Kgs., Lyngby, Denmark., Beyene G; Department of Medical Laboratory Sciences, Faculty of Health Sciences, Jimma University, Jimma, Ethiopia., Wain J; Quadram Institute Bioscience, Norwich Research Park, Norwich, UK.; Norwich Medical School, University of East Anglia, Norwich, UK., Nair S; Gastrointestinal Bacterial Reference Unit, United Kingdom Health Security Agency, Colindale, London, UK., Chattaway MA; Gastrointestinal Bacterial Reference Unit, United Kingdom Health Security Agency, Colindale, London, UK., Perez-Sepulveda BM; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK., Ceyssens PJ; Division of Human Bacterial Diseases, Sciensano, Brussels, Belgium., de Block T; Clinical Reference Laboratory, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium., Lee WWY; Gastrointestinal Bacterial Reference Unit, United Kingdom Health Security Agency, Colindale, London, UK.; MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK., Pardos de la Gandara M; Institut Pasteur, Université Paris Cité, Unité des bactéries pathogènes entériques, F-75015, Paris, France., Kornschober C; Austrian Agency for Health and Food Safety (AGES), Institute for Medical Microbiology and Hygiene, 8010, Graz, Austria., Moran-Gilad J; Department of Health Policy and Management, School of Public Health, Faculty of Health Sciences, Ben Gurion University of the Negev, Beer Sheva, Israel., Veldman KT; Department of Bacteriology, Host Pathogen Interaction & Diagnostics, Wageningen Bioveterinary Research, Lelystad, The Netherlands., Cormican M; Antimicrobial Resistance and Microbial Ecology Group, School of Medicine, University of Galway, Galway, Ireland., Torpdahl M; Department of Bacteriology, Mycology & Parasitology, Statens Serum Institut, 5 Artillerivej, DK-2300, Copenhagen S, Denmark., Fields PI; Division of Foodborne, Waterborne and Environmental Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA., Černý T; National Reference Laboratory for salmonella, State Veterinary Institute Prague, Prague, Czech Republic., Hardy L; Unit of Tropical Bacteriology, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium., Tack B; Unit of Tropical Bacteriology, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.; Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium., Mellor KC; London School of Hygiene and Tropical Medicine, Bloomsbury, London, UK.; Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom., Thomson N; London School of Hygiene and Tropical Medicine, Bloomsbury, London, UK.; Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom., Dougan G; Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID),Department of Medicine, University of Cambridge, Cambridge, CB2 0SP, United Kingdom., Deborggraeve S; Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium., Jacobs J; Unit of Tropical Bacteriology, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.; Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium., Laukens K; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium., Van Puyvelde S; Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom. sandra.vanpuyvelde@uantwerpen.be.; Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID),Department of Medicine, University of Cambridge, Cambridge, CB2 0SP, United Kingdom. sandra.vanpuyvelde@uantwerpen.be.; Laboratory of Medical Microbiology, Vaccine & Infectious Disease Institute, University of Antwerp, Antwerp, Belgium. sandra.vanpuyvelde@uantwerpen.be.

المصدر: Nature communications [Nat Commun] 2023 Jun 14; Vol. 14 (1), pp. 3517. Date of Electronic Publication: 2023 Jun 14.

نوع المنشور: Journal Article; Review; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Anti-Bacterial Agents*/pharmacology , Drug Resistance, Bacterial*/genetics, Humans ; Ethiopia/epidemiology ; Genomics ; Salmonella/genetics

SCR Organism: Salmonella enterica subsp. enterica

المؤلفون: Cuypers WL; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium.; Tropical Bacteriology Unit, Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium., Dönertaş HM; European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK., Grewal JK; Canada's Michael Smith Genome Sciences Centre, BC Cancer Research Institute, Vancouver, British Columbia, Canada., Fatima N; ISCB Student Council, NA, Sweden., Donnelly C; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium., Mer AS; Princess Margaret Cancer Centre, University Health Network, Toronto, Canada., Krieger S; Department of Computer Science, University of Arizona, Tucson, Arizona, USA., Cuypers B; Adrem Data Lab, Department of Computer Science, University of Antwerp, Antwerp, Belgium.; Molecular Parasitology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium., Rahman F; School of Human and Life Sciences, Canterbury Christ Church University, Canterbury, UK.

المصدر: F1000Research [F1000Res] 2021 Jun 04; Vol. 10. Date of Electronic Publication: 2021 Jun 04 (Print Publication: 2021).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: F1000 Research Ltd Country of Publication: England NLM ID: 101594320 Publication Model: eCollection Cited Medium: Internet ISSN: 2046-1402 (Electronic) Linking ISSN: 20461402 NLM ISO Abbreviation: F1000Res Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology* , Students*, Humans ; Research Personnel

المؤلفون: Cuypers WL; 1​Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerpen, Belgium.; 2​Department of Mathematics and Computer Science, University of Antwerp, Antwerpen, Belgium., Jacobs J; 3​Department of Clinical Sciences, Institute of Tropical Medicine, Antwerpen, Belgium.; 4​Department of Microbiology and Immunology, Katholieke Universiteit Leuven (KU Leuven), Leuven, Belgium., Wong V; 5​Department of Medicine, University of Cambridge, Addenbrooke's Hospital, Cambridge, UK.; 6​Wellcome Trust Sanger Institute, Hinxton, UK., Klemm EJ; 6​Wellcome Trust Sanger Institute, Hinxton, UK., Deborggraeve S; 1​Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerpen, Belgium., Van Puyvelde S; 6​Wellcome Trust Sanger Institute, Hinxton, UK.; 1​Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerpen, Belgium.

المصدر: Microbial genomics [Microb Genom] 2018 Jul; Vol. 4 (7). Date of Electronic Publication: 2018 Jul 05.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Review

بيانات الدورية: Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE

مواضيع طبية MeSH: Anti-Bacterial Agents/*therapeutic use , Drug Resistance, Bacterial/*genetics , Drug Resistance, Multiple, Bacterial/*genetics , Fluoroquinolones/*therapeutic use , Salmonella/*drug effects , Salmonella/*genetics , Salmonella Infections/*drug therapy, Anti-Bacterial Agents/pharmacology ; Ciprofloxacin/therapeutic use ; Fluoroquinolones/pharmacology ; Genetic Markers ; Genome, Bacterial ; Humans ; Phylogeny ; Salmonella/classification ; Salmonella Infections/microbiology ; Typhoid Fever/microbiology ; Whole Genome Sequencing