المؤلفون: Schirrmeister Bettina E, Dalquen Daniel A, Anisimova Maria, Bagheri Homayoun C

المصدر: BMC Microbiology, Vol 12, Iss 1, p 177 (2012)

مصطلحات موضوعية: Prokaryotic phylogenetics, Concerted evolution, Gene copy number variation, Ribosomal rRNA, Cyanobacterial morphology, Gloeobacter violaceus, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: http://www.biomedcentral.com/1471-2180/12/177; https://doaj.org/toc/1471-2180

URL الوصول: https://doaj.org/article/ee9a234162b3482d9af0a40e378f46f2

المؤلفون: Altenhoff AM; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland., Levy J; Centre for Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, London WC1E 6BT, United Kingdom.; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom., Zarowiecki M; Genomics England, Queen Mary University of London, London EC1M 6BQ, United Kingdom., Tomiczek B; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom.; Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 80-307 Gdansk, Poland., Warwick Vesztrocy A; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom., Dalquen DA; Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland., Müller S; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom., Telford MJ; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom., Glover NM; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Dylus D; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Dessimoz C; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.; Centre for Life's Origins and Evolution, Department of Genetics, Evolution & Environment, University College London, London WC1E 6BT, United Kingdom.; Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.; Department of Computer Science, University College London, London WC1E 6BT, United Kingdom.

المصدر: Genome research [Genome Res] 2019 Jul; Vol. 29 (7), pp. 1152-1163. Date of Electronic Publication: 2019 Jun 24.

نوع المنشور: Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Genetic* , Genome* , Software* , Transcriptome*, Invertebrates/*classification, Animals ; Invertebrates/genetics ; Phylogeny

المؤلفون: Dalquen DA; Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK., Zhu T; Center for Computational Genomics, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China., Yang Z; Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.; Center for Computational Genomics, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.

المصدر: Systematic biology [Syst Biol] 2017 May 01; Vol. 66 (3), pp. 379-398.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9302532 Publication Model: Print Cited Medium: Internet ISSN: 1076-836X (Electronic) Linking ISSN: 10635157 NLM ISO Abbreviation: Syst Biol Subsets: MEDLINE

مواضيع طبية MeSH: Models, Biological* , Phylogeny*, Classification/*methods, Animal Migration ; Animals ; Computer Simulation ; Drosophila/classification ; Drosophila/genetics ; Gene Flow ; Likelihood Functions

المؤلفون: Altenhoff AM; Department of Computer Science, ETH Zurich, Zurich, Switzerland.; Computational Biochemistry Research Group, Swiss Institute of Bioinformatics, Zurich, Switzerland., Boeckmann B; Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva, Switzerland., Capella-Gutierrez S; Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain.; Yeast and Basidiomycete Research Group, CBS Fungal Biodiversity Centre, Utrecht, the Netherlands., Dalquen DA; Department of Genetics, Evolution, and Environment, University College London, London, UK., DeLuca T; Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, USA., Forslund K; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Huerta-Cepas J; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Linard B; Department of Life Sciences, Natural History Museum, London, UK., Pereira C; Université Paris-Sud, Laboratoire de Recherche en Informatique, Orsay, France.; Université Paris-Sud, Institute for Integrative Biology of the Cell, Orsay, France., Pryszcz LP; Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain., Schreiber F; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK., da Silva AS; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK., Szklarczyk D; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.; Bioinformatics Systems Biology Group, Swiss Institute of Bioinformatics, Zurich, Switzerland., Train CM; Department of Computer Science, ETH Zurich, Zurich, Switzerland., Bork P; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.; Germany Molecular Medicine Partnership Unit, University Hospital Heidelberg and European Molecular Biology Laboratory, Heidelberg, Germany.; Max Delbrück Centre for Molecular Medicine, Berlin, Germany., Lecompte O; LBGI, Computer Science Department, ICube, University of Strasbourg, Strasbourg, France., von Mering C; Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.; Bioinformatics Systems Biology Group, Swiss Institute of Bioinformatics, Zurich, Switzerland., Xenarios I; Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva, Switzerland.; Vital-IT, Swiss Institute of Bioinformatics, Lausanne, Switzerland.; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland., Sjölander K; Department of Bioengineering, University of California, Berkeley, California, USA., Jensen LJ; The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK., Muffato M; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK., Gabaldón T; Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain.; Institució Catalana de Recerca I Estudis Avançats, Barcelona, Spain., Lewis SE; Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Thomas PD; Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, California, USA., Sonnhammer E; Stockholm Bioinformatics Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Solna, Sweden., Dessimoz C; Department of Genetics, Evolution, and Environment, University College London, London, UK.; Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.; Department of Computer Science, University College London, London, UK.; Swiss Institute of Bioinformatics, Biophore Building, Lausanne, Switzerland.

مؤلفون مشاركون: Quest for Orthologs consortium

المصدر: Nature methods [Nat Methods] 2016 May; Vol. 13 (5), pp. 425-30. Date of Electronic Publication: 2016 Apr 04.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: Phylogeny*, Computational Biology/*standards , Genomics/*standards , Proteomics/*standards, Archaea/classification ; Archaea/genetics ; Bacteria/classification ; Bacteria/genetics ; Computational Biology/methods ; Databases, Genetic ; Eukaryota/classification ; Eukaryota/genetics ; Gene Ontology ; Genomics/methods ; Models, Genetic ; Proteomics/methods ; Sequence Analysis, Protein ; Sequence Homology ; Species Specificity

المؤلفون: Dalquen DA; Eldgenössische Technische Hochschule Zurich, Department of Computer Science, Zürich, Switzerland. ddalquen@ethz.ch, Altenhoff AM, Gonnet GH, Dessimoz C

المصدر: PloS one [PLoS One] 2013; Vol. 8 (2), pp. e56925. Date of Electronic Publication: 2013 Feb 25.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

مواضيع طبية MeSH: Gene Duplication/*genetics , Gene Transfer, Horizontal/*genetics , Mutagenesis, Insertional/*genetics, Genomics/methods

المؤلفون: Dalquen DA; Computational Biochemistry Research Group, ETH Zurich, Zürich, Switzerland., Dessimoz C

المصدر: Genome biology and evolution [Genome Biol Evol] 2013; Vol. 5 (10), pp. 1800-6.

نوع المنشور: Letter; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Gene Duplication*, Plants/*genetics, Algorithms ; Animals ; Conserved Sequence/genetics ; Phylogeny

المؤلفون: Dalquen DA; Computational Biochemistry Research Group, Department of Computer Science, ETH Zurich, Universitätstrasse 6, Zürich, Switzerland. ddalquen@inf.ethz.ch, Anisimova M, Gonnet GH, Dessimoz C

المصدر: Molecular biology and evolution [Mol Biol Evol] 2012 Apr; Vol. 29 (4), pp. 1115-23. Date of Electronic Publication: 2011 Dec 08.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Genome* , Models, Genetic* , Software*, Computational Biology/*methods, Algorithms ; Base Composition ; Computer Simulation ; Gene Transfer, Horizontal ; Genetic Speciation ; Mutagenesis