المؤلفون: Sikora M; Centre of New Technologies, University of Warsaw, Warsaw, Poland.; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland., Klimentova E; Central European Institute of Technology, Masaryk University, Brno, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic., Uchal D; Centre of New Technologies, University of Warsaw, Warsaw, Poland.; Faculty of Physics, University of Warsaw, Warsaw, Poland., Sramkova D; Central European Institute of Technology, Masaryk University, Brno, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic., Perlinska AP; Centre of New Technologies, University of Warsaw, Warsaw, Poland., Nguyen ML; Centre of New Technologies, University of Warsaw, Warsaw, Poland., Korpacz M; Centre of New Technologies, University of Warsaw, Warsaw, Poland.; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland., Malinowska R; Centre of New Technologies, University of Warsaw, Warsaw, Poland.; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland., Nowakowski S; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.; Faculty of Physics, University of Warsaw, Warsaw, Poland., Rubach P; Centre of New Technologies, University of Warsaw, Warsaw, Poland.; Warsaw School of Economics, Warsaw, Poland., Simecek P; Central European Institute of Technology, Masaryk University, Brno, Czech Republic., Sulkowska JI; Centre of New Technologies, University of Warsaw, Warsaw, Poland.

المصدر: Protein science : a publication of the Protein Society [Protein Sci] 2024 Jul; Vol. 33 (7), pp. e4998.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

مواضيع طبية MeSH: Machine Learning* , Proteins*/chemistry , Proteins*/genetics , Databases, Protein* , Models, Molecular*, Protein Conformation ; Amino Acid Sequence

المؤلفون: Liang Y; The First Affiliated Hospital, Harbin Medical University, Harbin, 150001, China., Lv D; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Liu K; School of Interdisciplinary Medicine and Engineering, Harbin Medical University, Harbin, 150081, China., Yang L; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Shu H; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Wen L; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Lv C; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Sun Q; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Yin J; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Liu H; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China., Xu J; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China. Electronic address: xujuanbiocc@ems.hrbmu.edu.cn., Liu Z; Affiliated Foshan Maternity&Child Healthcare Hospital, Southern Medical University, Guangzhou, 510000, China. Electronic address: whitexblack@163.com., Ding N; College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, 150081, China. Electronic address: dingnabioinfor@hrbmu.edu.cn.

المصدر: Computers in biology and medicine [Comput Biol Med] 2024 Jul; Vol. 177, pp. 108660. Date of Electronic Publication: 2024 May 27.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

مواضيع طبية MeSH: RNA, Untranslated*/chemistry , RNA, Untranslated*/genetics , Databases, Protein*, Humans ; Proteins/chemistry ; Animals ; Micropeptides

المؤلفون: Liu K; Department of Computer Science, Luddy School of Informatics, Computing and Engineering, Indiana University, IN 47408, United States., Tao C; Department of Computer Science, Luddy School of Informatics, Computing and Engineering, Indiana University, IN 47408, United States., Ye Y; Department of Computer Science, Luddy School of Informatics, Computing and Engineering, Indiana University, IN 47408, United States., Tang H; Department of Computer Science, Luddy School of Informatics, Computing and Engineering, Indiana University, IN 47408, United States.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Supplement_1), pp. i257-i265.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Proteomics*/methods , Peptides*/chemistry , Tandem Mass Spectrometry*/methods , Databases, Protein*, Humans ; Deep Learning ; Software

المؤلفون: Peng Y; Khoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States., Jain S; Khoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States.; The Institute for Experiential AI, Northeastern University, Boston, MA 02115, United States., Radivojac P; Khoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Supplement_1), pp. i428-i436.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Tandem Mass Spectrometry*/methods , Proteomics*/methods , Algorithms* , Databases, Protein*, Peptides/chemistry ; Proteins/chemistry

المؤلفون: Ananth V; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA., Sanders J; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA., Yilmaz M; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA., Wen B; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., Oh S; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA., Noble WS; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA.; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Supplement_1), pp. i410-i417.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Protein* , Peptides*/chemistry, Machine Learning ; Mass Spectrometry/methods ; Algorithms ; Sequence Analysis, Protein/methods ; Tandem Mass Spectrometry/methods

المؤلفون: Lai S; Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong, China., Zhao P; Interdisciplinary Programs Office, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong, China., Zhou C; Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong, China., Li N; Shenzhen-Hong Kong Collaborative Innovation Research Institute, HKUST, Futian, Shenzhen 518000, China.; Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong, China., Yu W; Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, Hong Kong, China.; Shenzhen-Hong Kong Collaborative Innovation Research Institute, HKUST, Futian, Shenzhen 518000, China.

المصدر: Journal of proteome research [J Proteome Res] 2024 Jun 07; Vol. 23 (6), pp. 1960-1969. Date of Electronic Publication: 2024 May 21.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

مواضيع طبية MeSH: Protein Processing, Post-Translational* , Databases, Protein* , Peptides*/chemistry , Peptides*/metabolism , Search Engine* , Proteomics*/methods, Humans ; Software ; Amino Acid Sequence ; Algorithms

المؤلفون: Freestone J; School of Mathematics and Statistics F07, University of Sydney, New South Wales 2006, Australia., Noble WS; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States.; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, United States., Keich U; School of Mathematics and Statistics F07, University of Sydney, New South Wales 2006, Australia.

المصدر: Journal of proteome research [J Proteome Res] 2024 Jun 07; Vol. 23 (6), pp. 1907-1914. Date of Electronic Publication: 2024 Apr 30.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

مواضيع طبية MeSH: Tandem Mass Spectrometry*/methods , Proteomics*/methods , Databases, Protein* , Protein Processing, Post-Translational*, Peptides/analysis ; Peptides/chemistry ; Machine Learning ; Humans ; Algorithms ; Software

المؤلفون: Freestone J; School of Mathematics and Statistics F07, University of Sydney, NSW 2006, Australia., Noble WS; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States.; Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, United States., Keich U; School of Mathematics and Statistics F07, University of Sydney, NSW 2006, Australia.

المصدر: Journal of proteome research [J Proteome Res] 2024 Jun 07; Vol. 23 (6), pp. 1894-1906. Date of Electronic Publication: 2024 Apr 23.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

مواضيع طبية MeSH: Tandem Mass Spectrometry*/methods , Algorithms* , Protein Processing, Post-Translational* , Databases, Protein* , Proteomics*/methods, Peptides/analysis ; Peptides/chemistry ; Humans ; Software ; Amino Acid Sequence

المؤلفون: Baskaran K; Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030-3305, USA. Electronic address: baskaran@uchc.edu., Ploskon E; Department of Molecular and Cell Biology, Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester LE1 7RH, UK., Tejero R; Departamento de Quίmica Fίsica, Universidad de Valencia, Dr. Moliner, 50 46100 Burjassot, Valencia, Spain., Yokochi M; Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan; Protein Data Bank Japan, Protein Research Foundation, Minoh, Osaka 562-8686, Japan., Harrus D; Protein Data Bank in Europe, EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Liang Y; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Peisach E; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Persikova I; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Ramelot TA; Department of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA., Sekharan M; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Tolchard J; Protein Data Bank in Europe, EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Westbrook JD; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Bardiaux B; Department of Structural Biology and Chemistry, Institut Pasteur, Université Paris Cité, CNRS UMR3528, 75015 Paris, France., Schwieters CD; Computational Biomolecular Magnetic Resonance Core, National Institute of Diabetes and Digestive and Kidney Diseases, Bethesda, MD 20892, USA., Patwardhan A; The Electron Microscopy Data Bank, EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Velankar S; Protein Data Bank in Europe, EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, La Jolla, La Jolla, CA, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA; Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA., Kurisu G; Protein Data Bank Japan, Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan; Protein Data Bank Japan, Protein Research Foundation, Minoh, Osaka 562-8686, Japan., Hoch JC; Biological Magnetic Resonance Data Bank, Department of Molecular Biology and Biophysics, UConn Health, Farmington, CT 06030-3305, USA., Montelione GT; Department of Chemistry and Chemical Biology, Center for Biotechnology and Interdisciplinary Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA; Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA. Electronic address: monteg3@rpi.edu., Vuister GW; Department of Molecular and Cell Biology, Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester LE1 7RH, UK. Electronic address: gv29@leicester.ac.uk., Young JY; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: jasmin@rcsb.rutgers.edu.

المصدر: Structure (London, England : 1993) [Structure] 2024 Jun 06; Vol. 32 (6), pp. 824-837.e1. Date of Electronic Publication: 2024 Mar 14.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101087697 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-4186 (Electronic) Linking ISSN: 09692126 NLM ISO Abbreviation: Structure Subsets: MEDLINE

مواضيع طبية MeSH: Nuclear Magnetic Resonance, Biomolecular*/methods , Databases, Protein* , Models, Molecular* , Protein Conformation* , Proteins*/chemistry, Software

المؤلفون: Mesbah I; Aix Marseille Univ, INSERM, DyNaMo, Turing Center of Living Systems (CENTURI), Marseille 13009, France., Habermann B; Aix Marseille Univ, CNRS, IBDM UMR7288, Turing Center of Living Systems (CENTURI), Marseille 13009, France., Rico F; Aix Marseille Univ, INSERM, DyNaMo, Turing Center of Living Systems (CENTURI), Marseille 13009, France.

المصدر: Database : the journal of biological databases and curation [Database (Oxford)] 2024 Jun 05; Vol. 2024.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Protein* , Internet* , Proteins*/chemistry , Proteins*/metabolism, User-Computer Interface ; Protein Unfolding