-
1دورية أكاديمية
المؤلفون: Amanda Hurley, Marc G. Chevrette, Deepa D. Acharya, Gabriel L. Lozano, Manuel Garavito, Jen Heinritz, Luis Balderrama, Mara Beebe, Martel L. DenHartog, Kamiyah Corinaldi, Renee Engels, Alyssa Gutierrez, Orli Jona, Josephine H. I. Putnam, Brody Rhodes, Tiffany Tsang, Simon Hernandez, Carol Bascom-Slack, Jessamina E. Blum, Paul A. Price, Debra Davis, Joanna Klein, Joshua Pultorak, Nora L. Sullivan, Nigel J. Mouncey, Pieter C. Dorrestein, Sarah Miller, Nichole A. Broderick, Jo Handelsman
المصدر: mBio, Vol 12, Iss 1 (2021)
مصطلحات موضوعية: Microbiology, QR1-502
وصف الملف: electronic resource
-
2
المؤلفون: Alan K. Jarmusch, Allegra T. Aron, Daniel Petras, Vanessa V. Phelan, Wout Bittremieux, Deepa D. Acharya, Mohammed M. A. Ahmed, Anelize Bauermeister, Matthew J. Bertin, Paul D. Boudreau, Ricardo M. Borges, Benjamin P. Bowen, Christopher J. Brown, Fernanda O. Chagas, Kenneth D. Clevenger, Mario S. P. Correia, William J. Crandall, Max Crüsemann, Tito Damiani, Oliver Fiehn, Neha Garg, William H Gerwick, Jeffrey R. Gilbert, Daniel Globisch, Paulo Wender P. Gomes, Steffen Heuckeroth, C. Andrew James, Scott A. Jarmusch, Sarvar A. Kakhkhorov, Kyo Bin Kang, Roland D Kersten, Hyunwoo Kim, Riley D. Kirk, Oliver Kohlbacher, Eftychia E. Kontou, Ken Liu, Itzel Lizama-Chamu, Gordon T. Luu, Tal Luzzatto Knaan, Michael T. Marty, Andrew C. McAvoy, Laura-Isobel McCall, Osama G. Mohamed, Omri Nahor, Timo H.J. Niedermeyer, Trent R. Northen, Kirsten E. Overdahl, Tomáš Pluskal, Johannes Rainer, Raphael Reher, Elys Rodriguez, Timo T. Sachsenberg, Laura M. Sanchez, Robin Schmid, Cole Stevens, Zhenyu Tian, Ashootosh Tripathi, Hiroshi Tsugawa, Kozo Nishida, Yuki Matsuzawa, Justin J.J. van der Hooft, Andrea Vicini, Axel Walter, Tilmann Weber, Quanbo Xiong, Tao Xu, Haoqi Nina Zhao, Pieter C. Dorrestein, Mingxun Wang
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a8f988ad1b439278436871971e6c216c
https://doi.org/10.1101/2022.08.06.503000 -
3
المؤلفون: Trent R. Northen, Carlos Molina-Santiago, Aaron W. Puri, Deepa D. Acharya, Jessica M Deutsch, Shankar Subramaniam, Mirtha Navarro-Hoyos, Dale A. Cummings, Katherine N. Maloney, Alan K. Jarmusch, Mingxun Wang, Benjamin Pullman, Felipe Vasquez-Castro, Michael M. Meijler, Jo Handelsman, Michael T. Marty, Scott A Jarmusch, Eoin Fahy, Neha Garg, Pieter C. Dorrestein, Monica Thukral, Katherine B. Louie, Itzhak Mizrahi, Vanessa V. Phelan, Robin Schmid, Benjamin P. Bowen, Andrew E. Allen, Simon Boecker, Morgan Panitchpakdi, Rachel L. Neve, Rachel Gregor, Deirdre Belle-Oudry, Allegra T. Aron, Nuno Bandeira, Daniel Petras
المصدر: Petras, D, Phelan, V V, Acharya, D, Allen, A E, Aron, A T, Bandeira, N, Bowen, B P, Belle-Oudry, D, Boecker, S, Cummings, D A, Deutsch, J M, Fahy, E, Garg, N, Gregor, R, Handelsman, J, Navarro-Hoyos, M, Jarmusch, A K, Jarmusch, S A, Louie, K, Maloney, K N, Marty, M T, Meijler, M M, Mizrahi, I, Neve, R L, Northen, T R, Molina-Santiago, C, Panitchpakdi, M, Pullman, B, Puri, A W, Schmid, R, Subramaniam, S, Thukral, M, Vasquez-Castro, F, Dorrestein, P C & Wang, M 2022, ' GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser ', Nature Methods, vol. 19, pp. 134-136 . https://doi.org/10.1038/s41592-021-01339-5
Nat Methodsمصطلحات موضوعية: World Wide Web, Computer science, Data Visualization, Dashboard (business), Cell Biology, Web Browser, Mass spectrometry, Molecular Biology, Biochemistry, Mass Spectrometry, Software, Article, Biotechnology
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8951885f29ecd4a50b26ca084f8da30f
https://orbit.dtu.dk/en/publications/8a312ea0-8907-4066-ad14-f245c2b4afe4 -
4
-
5
المؤلفون: Tim S. Bugni, Li F, Su-Chun Zhang, Federico E. Rey, Jens Walter, Ruiz-Ramírez S, Cheng Cc, Deepa D. Acharya, Restituto Tocmo, Mustafa Özçam, Jan Claesen, van Pijkeren Jp, Jee-Hwan Oh, Eugenio I. Vivas
مصطلحات موضوعية: Genetics, biology, Mutant, Secondary metabolite, Genome, chemistry.chemical_compound, chemistry, Polyketide synthase, Acyltransferase, polycyclic compounds, biology.protein, medicine, Peptidoglycan, Microbiome, Gene, medicine.drug
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::87d0d14b2de30edbb742507bf5351310
https://doi.org/10.1101/2021.06.11.448121 -
6
المؤلفون: Julia Oh, Yan-Ni Shi, Pavel A. Pevzner, Hosein Mohimani, Helge B. Bode, Florian Grundmann, Alexey Gurevich, Changhui Guan, Morgan Panitchpakdi, Amina Bouslimani, Edna Bode, Andrés Mauricio Caraballo-Rodríguez, Bahar Behsaz, Deepa D. Acharya, Annabell Linck, Pieter C. Dorrestein
المصدر: Nature communications, vol 12, iss 1
Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)
Nature Communicationsمصطلحات موضوعية: 0301 basic medicine, General Physics and Astronomy, Datasets as Topic, Peptide, 01 natural sciences, Genome, Mass Spectrometry, Drug Discovery, Peptide Synthases, Soil Microbiology, chemistry.chemical_classification, Natural products, Multidisciplinary, Microbiota, Nuclear magnetic resonance spectrometry, Anti-Bacterial Agents, Infectious Diseases, Multigene Family, Algorithms, Metabolic Networks and Pathways, Biotechnology, Peptide Biosynthesis, Science, Genomics, Computational biology, Biology, 010402 general chemistry, General Biochemistry, Genetics and Molecular Biology, Article, 03 medical and health sciences, Metabolomics, Genetics, Humans, Amino Acid Sequence, Gene, Data mining, Biological Products, Human Genome, Computational Biology, General Chemistry, Ribosomal RNA, 0104 chemical sciences, 030104 developmental biology, chemistry, Genome mining, Metagenomics, Peptides, Software
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7dd970b465997bb9044645ce14f6402
https://escholarship.org/uc/item/8j5742vh -
7
المؤلفون: Daniel Petras, Jessica M Deutsch, Morgan Panitchpakdi, Scott A Jarmusch, Michael T. Marty, Benjamin Pullman, Trent R. Northen, Katherine B. Louie, Nuno Bandeira, Michael M. Meijler, Monica Thukral, Shankar Subramaniam, Vanessa V. Phelan, Robin Schmid, Rachel L. Neve, Carlos Molina-Santiago, Simon Boecker, Aaron W. Puri, Andrew E. Allen, Mirtha Navarro-Hoyos, Deepa D. Acharya, Mingxun Wang, Itzhak Mizrahi, Rachel Gregor, Allegra T. Aron, Jo Handelsman, Alan K. Jarmusch, Dale A. Cummings, Katherine N. Maloney, Benjamin P. Bowen, Deirdre Belle-Oudry, Eoin Fahy, Neha Garg, Pieter C. Dorrestein, Felipe Vasquez-Castro
مصطلحات موضوعية: Data visualization, business.industry, media_common.quotation_subject, Dashboard (business), Art history, Art, business, media_common, Visualization
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::33d08156a21fde7255bd49f00406269c
https://doi.org/10.1101/2021.04.05.438475 -
8
المؤلفون: Nora L. Sullivan, Josephine H. I. Putnam, Deepa D. Acharya, Nigel J. Mouncey, Luis Balderrama, Pieter C. Dorrestein, Jen Heinritz, Joanna Klein, Renee Engels, Sarah Miller, Amanda Hurley, Manuel F. Garavito, Paul A. Price, Alyssa Gutierrez, Jessamina E. Blum, Martel L. DenHartog, Joshua D. Pultorak, Carol A. Bascom-Slack, Kamiyah Corinaldi, Jo Handelsman, Gabriel L. Lozano, Tiffany Tsang, Debra A. Davis, Simon Hernandez, Marc G. Chevrette, Nichole A. Broderick, Mara Beebe, Brody Rhodes, Orli Jona
المساهمون: Graf, Joerg
المصدر: mBio
mBio, Vol 12, Iss 1 (2021)
mBio, vol 12, iss 1مصطلحات موضوعية: 2019-20 coronavirus outbreak, Engineering, Coronavirus disease 2019 (COVID-19), Big Idea, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Science, Observation, Science education, Microbiology, 03 medical and health sciences, Virology, Political science, Drug Discovery, ComputingMilieux_COMPUTERSANDEDUCATION, biochemistry, Humans, Students, 030304 developmental biology, 0303 health sciences, antimicrobial activity, Bacteria, business.industry, 05 social sciences, 050301 education, Public relations, Stem Cell Research, Data science, Pipeline (software), QR1-502, Anti-Bacterial Agents, Infectious Diseases, Undergraduate research, Workforce, Molecular networking, Multi omics, crowdsourcing, Antimicrobial Resistance, Infection, business, 0503 education, multiomics
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::088aa798c9b2cc20b4eb5fdbf081915d
https://pubmed.ncbi.nlm.nih.gov/33593964 -
9
المؤلفون: Lars Ridder, Tim S. Bugni, Jamshid Amiri Moghaddam, Florian Huber, Elke Dittmann, Kelly C. Weldon, Louis-Félix Nothias, Douglas Sweeney, Mingxun Wang, Paul R. Jensen, Letícia V. Costa-Lotufo, Christine Beemelmanns, Katherine R. Duncan, Nadine Ziemert, Xuanji Li, Dulce G. Guillén Matus, Chao Du, Neha Garg, Jae Seoun Hur, Elizabeth I. Parkinson, Raphael Reher, Nicholas J. Tobias, Alex A. Blacutt, Emily C Pierce, Michelle Schorn, J. Michael Beman, Simon Rogers, María Victoria Berlanga-Clavero, Martin Baunach, Fan Zhang, Deepa D. Acharya, Harald Gross, Hamada Saad, M. Caroline Roper, Anna Edlund, Jason M. Crawford, Daniel Petras, Alexandra Calteau, Benjamin-Florian Hempel, Seoung Rak Lee, Max Crüsemann, Neil L. Kelleher, Hosein Mohimani, David P. Fewer, Shaurya Chanana, Carmen Saenz, Lena Gerwick, Ki-Hyun Kim, Roderich D. Süssmuth, Jörn Piel, Diego Romero, Marnix H. Medema, Anelize Bauermeister, Christopher Drozd, Regan J. Thomson, Anne Boullie, Michael W. Mullowney, Karine Pires, Andrew C. McAvoy, Alexander A. Aksenov, Saefuddin Aziz, Raquel Castelo-Branco, Julia M. Gauglitz, Mitchell N. Muskat, Bart Cuypers, Emily C. Gentry, Yi Yuan Lee, Eric J. N. Helfrich, Tam Dang, Pieter C. Dorrestein, Liu Cao, Rachel J. Dutton, Gilles P. van Wezel, Helge B. Bode, Margherita Sosio, Asker Daniel Brejnrod, Gajender Aleti, Leonard Kaysser, Amaro E. Trindade-Silva, Willam W. Metcalf, Irina Koester, Tiago Leao, Katherine D. Bauman, Jessica C. Little, Evgenia Glukhov, Ellis C. O’Neill, Justin J. J. van der Hooft, Alyssa M. Demko, Alexander B. Chase, Marc G. Chevrette, Bradley S. Moore, Christian Martin H, Kapil Tahlan, Cameron R. Currie, Allegra T. Aron, Muriel Gugger, Kyo Bin Kang, Víctor J. Carrión, Michael J. Rust, Gabriele M. König, Carlos Molina-Santiago, Søren J. Sørensen, Marianna Iorio, Jean-Claude Dujardin, Daniel Männle, Chung Sub Kim, Laura M. Sanchez, Katherine N. Maloney, Stefan Verhoeven, Tristan de Rond
المساهمون: Wageningen University and Research [Wageningen] (WUR), Netherlands eScience Center, University of Wisconsin-Madison, University of California [San Diego] (UC San Diego), University of California, Leibniz Institute for Natural Product Research and Infection Biology (Hans Knoell Institute), Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen, Jenderal Soedirman University [Purwokerto, Indonesia], Universidade de São Paulo (USP), University of Potsdam, University of California [Merced], Universidad de Málaga [Málaga] = University of Málaga [Málaga], University of California [Riverside] (UCR), Goethe-University Frankfurt am Main, Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung, Leibniz Association, Max Planck Institute for Terrestrial Microbiology, Max-Planck-Gesellschaft, Collection des Cyanobactéries, Institut Pasteur [Paris], Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Carnegie Mellon University [Pittsburgh] (CMU), Leiden University, Netherlands Institute of Ecology (NIOO-KNAW), Universidade do Porto, University of Helsinki, Yale University [New Haven], Yale University School of Medicine, University of Antwerp (UA), Institute of Tropical Medicine [Antwerp] (ITM), Technische Universität Berlin (TU), J. Craig Venter Institute [La Jolla, USA] (JCVI), Instituto de Investigaciones Científicas y Servicios de Alta Tecnología [Panama], The research reported in this publication was supported by an ASDI eScience Grant (ASDI.2017.030) fromthe Netherlands eScience Center (to J.J.J.v.d.H. and M.H.M.), a National Institutes of Health (NIH) Genometo Natural Products Network supplementary award (no. U01GM110706 to M.H.M.), a Wageningen GraduateSchool Postdoc Talent Program fellowship (to M.A.S.), a Marie Sklodowska-Curie Individual Fellowship from the European Union (MSCA-IF-EF-ST-897121 to M.A.S.), the National Science Foundation (NSF) (1817955 to L.M.S. and 1817887 to R.J.D.), a Fundaçao para a Ciencia e Tecnologia (FCT) fellowship (SFRH/BD/136367/2018 to R.C.B.), the National Cancer Institute of the NIH (award no. F32CA221327 to M.W.M.), the University of California, San Diego, Scripps Institution of Oceanography, and two grant from the NIH (Awards GM118815 and 107550 to L.G.), and the National Center for Complementary and Integrative Health of the NIH (award no. R01AT009143 to R.J.T. and N.L.K.)., Microbial Ecology (ME), Department of Food and Nutrition, Department of Microbiology, Helsinki Institute of Sustainability Science (HELSUS), Microbial Natural Products, University of California (UC), Universidade de São Paulo = University of São Paulo (USP), University of Potsdam = Universität Potsdam, University of California [Merced] (UC Merced), University of California [Riverside] (UC Riverside), Institut Pasteur [Paris] (IP), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Universiteit Leiden, Universidade do Porto = University of Porto, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Yale School of Medicine [New Haven, Connecticut] (YSM), Technical University of Berlin / Technische Universität Berlin (TU)
المصدر: Nature Chemical Biology
Nature Chemical Biology, Nature Publishing Group, 2021, ⟨10.1038/s41589-020-00724-z⟩
Nature Chemical Biology 17 (2021) 4
Nature Chemical Biology, 17(4), 363-368
Nature Chemical Biology, 17(4), 363-368. Nature Publishing Group
Nat Chem Biol
Schorn, M A, Verhoeven, S, Ridder, L, Huber, F, Acharya, D D, Aksenov, A A, Aleti, G, Moghaddam, J A, Aron, A T, Aziz, S, Bauermeister, A, Bauman, K D, Baunach, M, Beemelmanns, C, Beman, J M, Berlanga-Clavero, M V, Blacutt, A A, Bode, H B, Boullie, A, Brejnrod, A, Bugni, T S, Calteau, A, Cao, L, Carrión, V J, Castelo-Branco, R, Chanana, S, Chase, A B, Chevrette, M G, Costa-Lotufo, L V, Crawford, J M, Currie, C R, Cuypers, B, Dang, T, de Rond, T, Demko, A M, Dittmann, E, Du, C, Drozd, C, Dujardin, J-C, Dutton, R J, Edlund, A, Fewer, D P, Garg, N, Gauglitz, J M, Gentry, E C, Gerwick, L, Glukhov, E, Gross, H, Gugger, M, Matus, D G G, Helfrich, E J N, Hempel, B-F, Hur, J-S, Iorio, M, Jensen, P R, Kang, K B, Kaysser, L, Kelleher, N L, Kim, C S, Kim, K H, Koester, I, König, G M, Leao, T, Lee, S R, Lee, Y-Y, Li, X, Little, J C, Maloney, K N, Männle, D, Martin H., C, McAvoy, A C, Metcalf, W W, Mohimani, H, Molina-Santiago, C, Moore, B S, Mullowney, M W, Muskat, M, Nothias, L-F, O'Neill, E C, Parkinson, E I, Petras, D, Piel, J, Pierce, E C, Pires, K, Reher, R, Romero, D, Roper, M C, Rust, M, Saad, H, Saenz, C, Sanchez, L M, Sørensen, S J, Sosio, M, Süssmuth, R D, Sweeney, D, Tahlan, K, Thomson, R J, Tobias, N J, Trindade-Silva, A E, van Wezel, G P, Wang, M, Weldon, K C, Zhang, F, Ziemert, N, Duncan, K R, Crüsemann, M, Rogers, S, Dorrestein, P C, Medema, M H & van der Hooft, J J J 2021, ' A community resource for paired genomic and metabolomic data mining ', Nature Chemical Biology, vol. 17, no. 4, pp. 363-368 . https://doi.org/10.1038/s41589-020-00724-z
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature Chemical Biology, 2021, ⟨10.1038/s41589-020-00724-z⟩
Nature chemical biologyمصطلحات موضوعية: Databases, Factual, Bioinformatics, Systems biology, Metabolite, [SDV]Life Sciences [q-bio], Genomics, Computational biology, Biology, Genome, Plan_S-Compliant-OA, 03 medical and health sciences, chemistry.chemical_compound, Databases, Metabolomics, Bioinformatica, Metabolome, Data Mining, Life Science, MolEco, Molecular Biology, QH426, 030304 developmental biology, 0303 health sciences, METABOLÔMICA, 030302 biochemistry & molecular biology, Comment, Cell Biology, DNA, Computational biology and bioinformatics, Chemistry, chemistry, international, Community resource, 1182 Biochemistry, cell and molecular biology, Identification (biology)
وصف الملف: application/pdf
-
10
المؤلفون: Helen E. Blackwell, Jason C. Kwan, Matthew J. Styles, Yusi Cui, Deepa D. Acharya, Ian J. Miller, Scott R. Rajski, Doug R. Braun, Tim S. Bugni, Lingjun Li, Mark E. Berres
المصدر: ACS Chemical Biology. 14:1260-1270
مصطلحات موضوعية: Proteomics, 0301 basic medicine, Oligosaccharides, Genomics, Bacterial genome size, Computational biology, Biology, Micromonospora, 01 natural sciences, Biochemistry, DNA sequencing, Transcriptome, 03 medical and health sciences, Metabolomics, Gene cluster, Rhodococcus, Anthracyclines, 010405 organic chemistry, Quorum Sensing, General Medicine, 0104 chemical sciences, Quorum sensing, 030104 developmental biology, Genes, Bacterial, Multigene Family, Molecular Medicine