المؤلفون: Chang TG; Cancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA., Cao Y; Cancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA., Sfreddo HJ; Department of Surgery and Cancer Immunogenomics Research Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA., Dhruba SR; Cancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA., Lee SH; Department of Health Sciences and Technology, Samsung Advanced Institute of Health Science and Technology, Sungkyunkwan University, Seoul, South Korea., Valero C; Department of Surgery and Cancer Immunogenomics Research Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA., Yoo SK; The Marc and Jennifer Lipschultz Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Oncological Sciences, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Artificial Intelligence and Human Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Chowell D; The Marc and Jennifer Lipschultz Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Oncological Sciences, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Artificial Intelligence and Human Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Morris LGT; Department of Surgery and Cancer Immunogenomics Research Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA. morrisl@mskcc.org., Ruppin E; Cancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA. eytan.ruppin@nih.gov.

المصدر: Nature cancer [Nat Cancer] 2024 Jun 03. Date of Electronic Publication: 2024 Jun 03.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101761119 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2662-1347 (Electronic) Linking ISSN: 26621347 NLM ISO Abbreviation: Nat Cancer Subsets: MEDLINE

المؤلفون: Sinha S; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA. ssinha@sbpdiscovery.org.; NCI-Designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute, San Diego, CA, USA. ssinha@sbpdiscovery.org., Vegesna R; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Mukherjee S; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Kammula AV; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA.; University of Maryland, College Park, MD, USA., Dhruba SR; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Wu W; Department of Medicine, University of California, San Francisco, San Francisco, CA, USA., Kerr DL; Department of Medicine, University of California, San Francisco, San Francisco, CA, USA., Nair NU; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Jones MG; Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.; Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA.; Integrative Program in Quantitative Biology, University of California, San Francisco, San Francisco, CA, USA.; Whitehead Institute, Cambridge, MA, USA., Yosef N; Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.; Department of Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA., Stroganov OV; Rancho BioSciences, San Diego, CA, USA., Grishagin I; Rancho BioSciences, San Diego, CA, USA.; Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA., Aldape KD; Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA., Blakely CM; Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.; Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA., Jiang P; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Thomas CJ; Division of Preclinical Innovation, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD, USA.; Lymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA., Benes CH; Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA., Bivona TG; Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.; Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.; Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.; Chan Zuckerberg Biohub Investigator, San Francisco, CA, USA., Schäffer AA; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA., Ruppin E; Cancer Data Science Laboratory, National Cancer Institute, Bethesda, MD, USA. eytan.ruppin@nih.gov.

المصدر: Nature cancer [Nat Cancer] 2024 Jun; Vol. 5 (6), pp. 938-952. Date of Electronic Publication: 2024 Apr 18.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101761119 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2662-1347 (Electronic) Linking ISSN: 26621347 NLM ISO Abbreviation: Nat Cancer Subsets: MEDLINE

مواضيع طبية MeSH: Single-Cell Analysis*/methods , Precision Medicine*/methods , Drug Resistance, Neoplasm*/genetics , Transcriptome*, Humans ; Neoplasms/genetics ; Neoplasms/drug therapy ; Gene Expression Profiling/methods ; Female ; Lung Neoplasms/genetics ; Lung Neoplasms/drug therapy ; Gene Expression Regulation, Neoplastic ; Cell Line, Tumor ; Computational Biology/methods

المؤلفون: Sahni S; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Wang B; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Wu D; Laboratory of Pathology, Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Dhruba SR; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Nagy M; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Patkar S; Artificial Intelligence Resource, Molecular Imaging Branch, National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Ferreira I; Experimental Cancer Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge UK., Wang K; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA., Ruppin E; Cancer Data Science Laboratory (CDSL), Center for Cancer Research (CCR), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD USA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Sep 22. Date of Electronic Publication: 2023 Sep 22.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Welch N; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA; Department of Gastroenterology and Hepatology, Cleveland Clinic, Cleveland, Ohio, USA., Singh SS; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Kumar A; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Dhruba SR; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, Texas, USA., Mishra S; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Sekar J; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Bellar A; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Attaway AH; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA; Department of Pulmonary Medicine, Cleveland Clinic, Cleveland, Ohio, USA., Chelluboyina A; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Willard BB; Proteomics Research Core Services, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Li L; Proteomics Research Core Services, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Huo Z; Department of Biostatistics, College of Public Health and Health Profession, University of Florida, Gainesville, Florida, USA., Karnik SS; Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Esser K; Department of Physiology and Functional Genomics, College of Medicine, University of Florida, Gainesville, Florida, USA., Longworth MS; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA., Shah YM; Department of Molecular & Integrative Physiology and Department of Gastroenterology, University of Michigan, Ann Arbor, Michigan, USA., Davuluri G; Integrated Physiology and Molecular Metabolism, Pennington Biomedical Research Center, Baton Rouge, Louisiana, USA., Pal R; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, Texas, USA. Electronic address: Ranadip.pal@ttu.edu., Dasarathy S; Department of Inflammation & Immunity, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA; Department of Gastroenterology and Hepatology, Cleveland Clinic, Cleveland, Ohio, USA. Electronic address: dasaras@ccf.org.

المصدر: The Journal of biological chemistry [J Biol Chem] 2021 Sep; Vol. 297 (3), pp. 101023. Date of Electronic Publication: 2021 Jul 31.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

مواضيع طبية MeSH: Genomics* , Proteomics* , Transcriptome*, Hyperammonemia/*metabolism , Muscle Fibers, Skeletal/*metabolism , Muscle, Skeletal/*metabolism, Animals ; Flow Cytometry ; Humans ; Hyperammonemia/genetics ; Immunoblotting/methods ; Mice ; Real-Time Polymerase Chain Reaction ; Reproducibility of Results

المؤلفون: Bazgir O; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, TX, 79409, USA., Zhang R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, TX, 79409, USA., Dhruba SR; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, TX, 79409, USA., Rahman R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, TX, 79409, USA., Ghosh S; Department of Mathematics and Statistics, Texas Tech University, 1108 Memorial Circle, Lubbock, TX, 79409, USA.; Department of Statistics, University of Nebraska-Lincoln, 3310 Holdrege St, Lincoln, NE, 68503, USA., Pal R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, TX, 79409, USA. ranadip.pal@ttu.edu.

المصدر: Nature communications [Nat Commun] 2020 Sep 01; Vol. 11 (1), pp. 4391. Date of Electronic Publication: 2020 Sep 01.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Deep Learning*, Antineoplastic Agents/*pharmacology , Image Processing, Computer-Assisted/*methods , Neoplasms/*drug therapy, Antineoplastic Agents/therapeutic use ; Bayes Theorem ; Biomarkers, Tumor/genetics ; Cell Line, Tumor ; Cell Proliferation/drug effects ; Datasets as Topic ; Drug Resistance, Neoplasm ; Drug Screening Assays, Antitumor/methods ; Gene Expression Profiling ; High-Throughput Nucleotide Sequencing ; Humans ; Neoplasms/pathology ; Oligonucleotide Array Sequence Analysis

المؤلفون: Rahman R; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, TX 79409, USA., Dhruba SR; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, TX 79409, USA., Matlock K; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, TX 79409, USA., De-Niz C; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, TX 79409, USA., Ghosh S; Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX 79409, USA., Pal R; Department of Electrical and Computer Engineering, Texas Tech University, Lubbock, TX 79409, USA.; Department of Mathematics and Statistics, Texas Tech University, Lubbock, TX 79409, USA.

المصدر: Briefings in bioinformatics [Brief Bioinform] 2019 Sep 27; Vol. 20 (5), pp. 1734-1753.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Review

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

مواضيع طبية MeSH: Pharmacogenetics*, Antineoplastic Agents/*therapeutic use , Neoplasms/*drug therapy , Neoplasms/*genetics, Cell Line, Tumor ; Databases, Genetic ; Humans ; Neoplasms/pathology

المؤلفون: Dhruba SR; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA., Rahman A; Department of Mathematics and Statistics, Texas Tech University, 1108 Memorial Circle, Lubbock, 79409, TX, USA., Rahman R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA., Ghosh S; Department of Mathematics and Statistics, Texas Tech University, 1108 Memorial Circle, Lubbock, 79409, TX, USA. souparno.ghosh@ttu.edu., Pal R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA.

المصدر: BMC bioinformatics [BMC Bioinformatics] 2019 Jun 20; Vol. 20 (Suppl 12), pp. 317. Date of Electronic Publication: 2019 Jun 20.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics

مواضيع طبية MeSH: Models, Theoretical* , Pharmacology*, Computer Simulation ; Databases as Topic ; Dose-Response Relationship, Drug ; Humans ; Time Factors

المؤلفون: Rahman R; Texas Tech University, Department of Electrical and Computer Engineering, Lubbock, Texas, 79409, USA., Dhruba SR; Texas Tech University, Department of Electrical and Computer Engineering, Lubbock, Texas, 79409, USA., Ghosh S; Texas Tech University, Department of Mathematics and Statistics, Lubbock, Texas, 79409, USA., Pal R; Texas Tech University, Department of Electrical and Computer Engineering, Lubbock, Texas, 79409, USA. ranadip.pal@ttu.edu.

المصدر: Scientific reports [Sci Rep] 2019 Feb 07; Vol. 9 (1), pp. 1628. Date of Electronic Publication: 2019 Feb 07.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

مواضيع طبية MeSH: Dose-Response Relationship, Drug* , Models, Theoretical*, Area Under Curve ; Cell Line ; Databases, Pharmaceutical ; Humans ; Multivariate Analysis ; Neoplasms/drug therapy ; Neoplasms/genetics ; Regression Analysis ; Reproducibility of Results

المؤلفون: Dhruba SR; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA., Rahman R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA., Matlock K; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA., Ghosh S; Department of Mathematics and Statistics, Texas Tech University, 1108 Memorial Circle, Lubbock, 79409, TX, USA., Pal R; Department of Electrical and Computer Engineering, Texas Tech University, 1012 Boston Ave, Lubbock, 79409, TX, USA. ranadip.pal@ttu.edu.

المصدر: BMC bioinformatics [BMC Bioinformatics] 2018 Dec 28; Vol. 19 (Suppl 17), pp. 497. Date of Electronic Publication: 2018 Dec 28.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms*, Antineoplastic Agents/*therapeutic use , Neoplasms/*drug therapy, Area Under Curve ; Databases, Factual ; Gene Expression Regulation, Neoplastic ; Humans ; Neoplasms/genetics

المؤلفون: Dhruba SR, Rahmanl R, Matlockl K, Ghosh S, Pal R

المصدر: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference [Annu Int Conf IEEE Eng Med Biol Soc] 2018 Jul; Vol. 2018, pp. 1246-1249.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: [IEEE] Country of Publication: United States NLM ID: 101763872 Publication Model: Print Cited Medium: Internet ISSN: 2694-0604 (Electronic) Linking ISSN: 23757477 NLM ISO Abbreviation: Annu Int Conf IEEE Eng Med Biol Soc Subsets: MEDLINE

مواضيع طبية MeSH: Pharmacogenetics*, Databases, Factual