المؤلفون: Frangieh CJ; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Wilkinson ME; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Strebinger D; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Strecker J; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Walsh ML; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Faure G; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Yushenova IA; Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA., Macrae RK; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Arkhipova IR; Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA, 02543, USA. iarkhipova@mbl.edu., Zhang F; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. zhang@broadinstitute.org.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.

المصدر: Mobile DNA [Mob DNA] 2024 Jun 11; Vol. 15 (1), pp. 12. Date of Electronic Publication: 2024 Jun 11.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 101519891 Publication Model: Electronic Cited Medium: Print ISSN: 1759-8753 (Print) NLM ISO Abbreviation: Mob DNA Subsets: PubMed not MEDLINE

المؤلفون: Yao D; Program in Systems, Synthetic, and Quantitative Biology, Harvard University, Cambridge, MA, USA., Binan L; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Bezney J; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA., Simonton B; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Freedman J; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA., Frangieh CJ; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Dey K; Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA., Geiger-Schuller K; Genentech, South San Francisco, CA, USA., Eraslan B; Genentech, South San Francisco, CA, USA., Gusev A; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.; Division of Genetics, Brigham and Women's Hospital, Boston, MA, USA., Regev A; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Genentech, South San Francisco, CA, USA., Cleary B; Faculty of Computing and Data Sciences, Boston University, Boston, MA, USA. bcleary@bu.edu.; Department of Biology, Boston University, Boston, MA, USA. bcleary@bu.edu.; Department of Biomedical Engineering, Boston University, Boston, MA, USA. bcleary@bu.edu.; Program in Bioinformatics, Boston University, Boston, MA, USA. bcleary@bu.edu.; Biological Design Center, Boston University, Boston, MA, USA. bcleary@bu.edu.

المصدر: Nature biotechnology [Nat Biotechnol] 2023 Oct 23. Date of Electronic Publication: 2023 Oct 23.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

المؤلفون: Strebinger D; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Frangieh CJ; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Friedrich MJ; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Faure G; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Macrae RK; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA., Zhang F; Howard Hughes Medical Institute, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA. zhang@broadinstitute.org.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. zhang@broadinstitute.org.

المصدر: Nature communications [Nat Commun] 2023 Aug 23; Vol. 14 (1), pp. 5141. Date of Electronic Publication: 2023 Aug 23.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Antibodies* , Lentivirus*, Humans ; Membrane Fusion ; Tropism ; Viral Envelope Proteins

المؤلفون: Ho P; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Melms JC; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Rogava M; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Frangieh CJ; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Klarman Cell Observatory, the Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Poźniak J; Laboratory for Molecular Cancer Biology, Center for Cancer Biology, VIB, 3000 Leuven, Belgium; Department of Oncology, KU Leuven, 3000 Leuven, Belgium., Shah SB; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Walsh Z; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Kyrysyuk O; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Amin AD; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Caprio L; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Fullerton BT; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA., Soni RK; Proteomics and Macromolecular Crystallography Shared Resource, Columbia University, New York, NY 10032, USA., Ager CR; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Biermann J; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Program for Mathematical Genomics, Department of Systems Biology, Columbia University, New York, NY 10032, USA., Wang Y; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Program for Mathematical Genomics, Department of Systems Biology, Columbia University, New York, NY 10032, USA., Khosravi-Maharlooei M; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Department of Immunology, Mayo Clinic, Scottsdale, AZ 85259, USA., Zanetti G; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Mu M; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA., Fatima H; Department of Pediatrics, Columbia University, New York, NY 10032, USA., Moore EK; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Department of Medicine, Division of Rheumatology, Columbia University, New York, NY 10032, USA., Vasan N; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA., Bakhoum SF; Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA., Reiner SL; Department of Pediatrics, Columbia University, New York, NY 10032, USA; Department of Microbiology and Immunology, Columbia University, New York, NY 10032, USA., Bernatchez C; Department of Medical Oncology, MD Anderson Cancer Center, Houston, TX 77030, USA., Sykes M; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Department of Microbiology and Immunology, Columbia University, New York, NY 10032, USA; Department of Surgery, Columbia University, New York, NY 10032, USA., Mace EM; Department of Pediatrics, Columbia University, New York, NY 10032, USA., Wucherpfennig KW; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Schadendorf D; Department of Dermatology, University Hospital Essen and German Cancer Consortium, Partner Site, 45147 Essen, Germany., Bechter O; Department of Oncology, KU Leuven, 3000 Leuven, Belgium., Shah P; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA., Schwartz GK; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA., Marine JC; Laboratory for Molecular Cancer Biology, Center for Cancer Biology, VIB, 3000 Leuven, Belgium; Department of Oncology, KU Leuven, 3000 Leuven, Belgium., Izar B; Department of Medicine, Division of Hematology and Oncology, Columbia University, New York, NY 10032, USA; Columbia Center for Translational Immunology, Department of Medicine, Columbia University, New York, NY 10032, USA; Program for Mathematical Genomics, Department of Systems Biology, Columbia University, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA. Electronic address: bi2175@cumc.columbia.edu.

المصدر: Cancer cell [Cancer Cell] 2023 Jul 10; Vol. 41 (7), pp. 1207-1221.e12. Date of Electronic Publication: 2023 Jun 15.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101130617 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-3686 (Electronic) Linking ISSN: 15356108 NLM ISO Abbreviation: Cancer Cell Subsets: MEDLINE

مواضيع طبية MeSH: B7-H1 Antigen*/genetics , Melanoma*/genetics , Melanoma*/metabolism, Mice ; Animals ; T-Lymphocytes ; CD58 Antigens/chemistry ; CD58 Antigens/metabolism ; Lymphocyte Activation

المؤلفون: Wilkinson ME; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Frangieh CJ; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Macrae RK; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Zhang F; Howard Hughes Medical Institute, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

المصدر: Science (New York, N.Y.) [Science] 2023 Apr 21; Vol. 380 (6642), pp. 301-308. Date of Electronic Publication: 2023 Apr 06.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

مواضيع طبية MeSH: Long Interspersed Nucleotide Elements* , Reverse Transcription* , RNA-Directed DNA Polymerase*/chemistry, Cryoelectron Microscopy ; Bombyx

المؤلفون: Simmons SK; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Lithwick-Yanai G; Ultima Genomics, Newark, CA, USA., Adiconis X; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Oberstrass F; Ultima Genomics, Newark, CA, USA., Iremadze N; Ultima Genomics, Newark, CA, USA., Geiger-Schuller K; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech, South San Francisco, CA, USA., Thakore PI; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech, South San Francisco, CA, USA., Frangieh CJ; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Electrical Engineering and Computer Science, MIT, Cambridge, MA, USA., Barad O; Ultima Genomics, Newark, CA, USA., Almogy G; Ultima Genomics, Newark, CA, USA., Rozenblatt-Rosen O; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Genentech, South San Francisco, CA, USA., Regev A; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Biology, MIT, Cambridge, MA, USA.; Genentech, South San Francisco, CA, USA., Lipson D; Ultima Genomics, Newark, CA, USA., Levin JZ; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA. jlevin@broadinstitute.org.; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA. jlevin@broadinstitute.org.

المصدر: Nature biotechnology [Nat Biotechnol] 2023 Feb; Vol. 41 (2), pp. 204-211. Date of Electronic Publication: 2022 Sep 15.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Expression Profiling*/methods , Leukocytes, Mononuclear*, Humans ; Sequence Analysis, RNA/methods ; Single-Cell Gene Expression Analysis ; Single-Cell Analysis/methods ; Nucleotides

المؤلفون: Yao D; Program in Systems, Synthetic, and Quantitative Biology, Harvard University, Cambridge, MA., Binan L; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA., Bezney J; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA.; Current address: Department of Genetics, Stanford University School of Medicine, Stanford, CA., Simonton B; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA., Freedman J; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA., Frangieh CJ; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA., Dey K; Harvard T.H. Chan School of Public Health, Boston, MA., Geiger-Schuller K; Genentech, South San Francisco, CA., Eraslan B; Genentech, South San Francisco, CA., Gusev A; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA.; Division of Genetics, Brigham and Women's Hospital, Boston, MA.; These authors jointly supervised this work., Regev A; Klarman Cell Observatory, Broad Institute of Harvard and MIT, Cambridge, MA.; Current address: Genentech, South San Francisco, CA.; These authors jointly supervised this work., Cleary B; Faculty of Computing and Data Sciences, Boston University, Boston, MA.; Department of Biology, Boston University, Boston, MA.; Department of Biomedical Engineering, Boston University, Boston, MA.; Program in Bioinformatics, Boston University, Boston, MA.; Biological Design Center, Boston University, Boston, MA.; These authors jointly supervised this work.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jan 23. Date of Electronic Publication: 2023 Jan 23.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Melms JC; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Biermann J; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Huang H; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Wang Y; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Nair A; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Tagore S; Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA., Katsyv I; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Rendeiro AF; Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA., Amin AD; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Schapiro D; Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Frangieh CJ; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Luoma AM; Department of Cancer Immunology and Virology, Dana-Farber Cancer Center, Boston, MA, USA., Filliol A; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Fang Y; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Ravichandran H; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., Clausi MG; Human Immune Monitoring Core, Columbia University Irving Medical Center, New York, NY, USA., Alba GA; Department of Medicine, Division of Pulmonary and Critical Care, Massachusetts General Hospital, Boston, MA, USA., Rogava M; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Chen SW; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Ho P; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Montoro DT; Cell Circuits, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Systems Biology, Harvard Medical School, Boston, MA, USA., Kornberg AE; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Han AS; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Bakhoum MF; Department of Ophthalmology, University of California San Diego, La Jolla, CA, USA., Anandasabapathy N; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Dermatology, Weill Cornell Medical College, New York, NY, USA.; Meyer Cancer Center, Weill Cornell Medical College, New York, NY, USA., Suárez-Fariñas M; Department of Genetics and Genomic Science, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Bakhoum SF; Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA., Bram Y; Division of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Borczuk A; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Guo XV; Human Immune Monitoring Core, Columbia University Irving Medical Center, New York, NY, USA., Lefkowitch JH; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Marboe C; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Lagana SM; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Del Portillo A; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Tsai EJ; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Zorn E; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Markowitz GS; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Schwabe RF; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA.; Institute of Human Nutrition, Columbia University, New York, NY, USA., Schwartz RE; Division of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Elemento O; Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., Saqi A; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Hibshoosh H; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Que J; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu., Izar B; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Program for Mathematical Genomics, Columbia University, New York, NY, USA. bi2175@cumc.columbia.edu.

المصدر: Nature [Nature] 2021 Oct; Vol. 598 (7882), pp. E2.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Melms JC; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Biermann J; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Huang H; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Wang Y; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Nair A; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Tagore S; Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA., Katsyv I; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Rendeiro AF; Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA., Amin AD; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Schapiro D; Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Frangieh CJ; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Luoma AM; Department of Cancer Immunology and Virology, Dana-Farber Cancer Center, Boston, MA, USA., Filliol A; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Fang Y; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Ravichandran H; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., Clausi MG; Human Immune Monitoring Core, Columbia University Irving Medical Center, New York, NY, USA., Alba GA; Department of Medicine, Division of Pulmonary and Critical Care, Massachusetts General Hospital, Boston, MA, USA., Rogava M; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Chen SW; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Ho P; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Montoro DT; Cell Circuits, Broad Institute of MIT and Harvard, Cambridge, MA, USA.; Systems Biology, Harvard Medical School, Boston, MA, USA., Kornberg AE; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Han AS; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Bakhoum MF; Department of Ophthalmology, University of California San Diego, La Jolla, CA, USA., Anandasabapathy N; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Dermatology, Weill Cornell Medical College, New York, NY, USA.; Meyer Cancer Center, Weill Cornell Medical College, New York, NY, USA., Suárez-Fariñas M; Department of Genetics and Genomic Science, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Bakhoum SF; Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.; Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, USA., Bram Y; Division of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Borczuk A; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Guo XV; Human Immune Monitoring Core, Columbia University Irving Medical Center, New York, NY, USA., Lefkowitch JH; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Marboe C; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Lagana SM; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Del Portillo A; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Tsai EJ; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA., Zorn E; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA., Markowitz GS; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Schwabe RF; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA.; Institute of Human Nutrition, Columbia University, New York, NY, USA., Schwartz RE; Division of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Elemento O; Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Caryl and Israel Englander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., Saqi A; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Hibshoosh H; Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Que J; Columbia Center for Human Development, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Division of Digestive and Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Department of Medicine, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu.; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY, USA. jq2240@cumc.columbia.edu., Izar B; Department of Medicine, Division of Hematology/Oncology, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Columbia Center for Translational Immunology, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY, USA. bi2175@cumc.columbia.edu.; Program for Mathematical Genomics, Columbia University, New York, NY, USA. bi2175@cumc.columbia.edu.

المصدر: Nature [Nature] 2021 Jul; Vol. 595 (7865), pp. 114-119. Date of Electronic Publication: 2021 Apr 29.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: Single-Cell Analysis*, COVID-19/*pathology , COVID-19/*virology , Lung/*pathology , SARS-CoV-2/*pathogenicity, Aged ; Aged, 80 and over ; Alveolar Epithelial Cells/pathology ; Alveolar Epithelial Cells/virology ; Atlases as Topic ; Autopsy ; COVID-19/immunology ; Case-Control Studies ; Female ; Fibroblasts/pathology ; Fibrosis/pathology ; Fibrosis/virology ; Humans ; Inflammation/pathology ; Inflammation/virology ; Macrophages/pathology ; Macrophages/virology ; Macrophages, Alveolar/pathology ; Macrophages, Alveolar/virology ; Male ; Middle Aged ; Plasma Cells/immunology ; T-Lymphocytes/immunology

المؤلفون: Bashyam A; David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Electrical Engineering & Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Frangieh CJ; David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Electrical Engineering & Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Raigani S; Division of Transplantation, Department of Surgery, Massachusetts General Hospital, Boston, MA, USA., Sogo J; David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.; Electrical Engineering & Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Bronson RT; Department of Microbiology and Immunobiology, Division of Immunology, Harvard Medical School, Boston, MA, USA., Uygun K; Center for Engineering in Medicine and Surgery, Massachusetts General Hospital, Boston, MA, USA., Yeh H; Division of Transplantation, Department of Surgery, Massachusetts General Hospital, Boston, MA, USA., Ausiello DA; Division of Nephrology, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.; Center for Assessment Technology and Continuous Health, Massachusetts General Hospital, Boston, MA, USA., Cima MJ; David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. mjcima@mit.edu.; Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. mjcima@mit.edu.

المصدر: Nature biomedical engineering [Nat Biomed Eng] 2021 Mar; Vol. 5 (3), pp. 240-251. Date of Electronic Publication: 2020 Nov 30.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

مواضيع طبية MeSH: Fibrosis/*pathology , Liver/*pathology , Liver Cirrhosis/*pathology , Magnetic Resonance Imaging/*instrumentation , Magnetic Resonance Imaging/*methods, Animals ; Humans ; Liver Transplantation/instrumentation ; Mice ; Mice, Inbred C57BL ; Mobile Applications ; Non-alcoholic Fatty Liver Disease/pathology ; Point-of-Care Systems