المؤلفون: Fremin BJ; Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bhatt AS; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA.; Department of Medicine (Hematology, Stanford University, Stanford, CA, USA.; Department of Genetics, Stanford University, Stanford, CA, USA., Kyrpides NC; Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Lead Contact, USA.

المصدر: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2023 Nov 07; Vol. 21, pp. 5630-5639. Date of Electronic Publication: 2023 Nov 07 (Print Publication: 2023).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

المؤلفون: Natarajan A; Department of Genetics, Stanford University, Stanford, California, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, California, USA., Fremin BJ; Department of Genetics, Stanford University, Stanford, California, USA., Schmidtke DT; Department of Microbiology and Immunology, Stanford University, Stanford, California, USA., Wolfe MK; Department of Civil and Environmental Engineering, Stanford University, Stanford, California, USA., Zlitni S; Department of Genetics, Stanford University, Stanford, California, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, California, USA., Graham KE; Department of Civil and Environmental Engineering, Stanford University, Stanford, California, USA., Brooks EF; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, California, USA., Severyn CJ; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, California, USA., Sakamoto KM; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, California, USA., Lacayo NJ; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, California, USA., Kuersten S; Illumina, Inc., San Diego, California, USA., Koble J; Illumina, Inc., San Diego, California, USA., Caves G; Illumina, Inc., San Diego, California, USA., Kaplan I; Department of Medicine (Blood and Marrow Transplantation and Cellular Therapy), Stanford University, Stanford, California, USA., Singh U; Department of Medicine (Infectious Diseases and Geographic Medicine), Stanford University, Stanford, California, USA., Jagannathan P; Department of Microbiology and Immunology, Stanford University, Stanford, California, USA.; Department of Medicine (Infectious Diseases and Geographic Medicine), Stanford University, Stanford, California, USA., Rezvani AR; Department of Medicine (Blood and Marrow Transplantation and Cellular Therapy), Stanford University, Stanford, California, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, California, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, California, USA., Boehm AB; Department of Civil and Environmental Engineering, Stanford University, Stanford, California, USA.

المصدر: Applied and environmental microbiology [Appl Environ Microbiol] 2023 Jul 26; Vol. 89 (7), pp. e0058323. Date of Electronic Publication: 2023 Jul 05.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5336 (Electronic) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol Subsets: MEDLINE

مواضيع طبية MeSH: Wastewater* , Solanum lycopersicum*, Animals ; Fruit ; Biomarkers ; Feces/microbiology ; Environmental Monitoring/methods

المؤلفون: Natarajan A; Department of Genetics, Stanford University, Stanford, CA, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, CA, USA., Fremin BJ; Department of Genetics, Stanford University, Stanford, CA, USA., Schmidtke DT; Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA., Wolfe MK; Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, USA., Zlitni S; Department of Genetics, Stanford University, Stanford, CA, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, CA, USA., Graham KE; Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, USA., Brooks EF; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, CA, USA., Severyn CJ; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, CA, USA., Sakamoto KM; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, CA, USA., Lacayo NJ; Department of Pediatrics, (Hematology/Oncology/Stem Cell Transplant & Regenerative Medicine), Stanford University, Stanford, CA, USA., Kuersten S; Illumina, Inc., San Diego, CA., Koble J; Illumina, Inc., San Diego, CA., Caves G; Illumina, Inc., San Diego, CA., Kaplan I; Department of Medicine (Blood and Marrow Transplantation and Cellular Therapy), Stanford University, Stanford, CA, USA., Singh U; Department of Medicine (Infectious Diseases and Geographic Medicine), Stanford University, Stanford, CA, USA., Jagannathan P; Department of Medicine (Infectious Diseases and Geographic Medicine), Stanford University, Stanford, CA, USA.; Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA., Rezvani AR; Department of Medicine (Blood and Marrow Transplantation and Cellular Therapy), Stanford University, Stanford, CA, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, CA, USA.; Department of Medicine (Hematology, Blood and Marrow Transplantation), Stanford University, Stanford, CA, USA., Boehm AB; Department of Civil and Environmental Engineering, Stanford University, Stanford, CA, USA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jan 10. Date of Electronic Publication: 2023 Jan 10.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Fremin BJ; Department of Energy, Joint Genome Institute, Berkeley, CA, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. Electronic address: bfremin@lbl.gov., Bhatt AS; Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA., Kyrpides NC; Department of Energy, Joint Genome Institute, Berkeley, CA, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. Electronic address: nckyrpides@lbl.gov.

مؤلفون مشاركون: Global Phage Small Open Reading Frame (GP-SmORF) Consortium

المصدر: Cell reports [Cell Rep] 2022 Jun 21; Vol. 39 (12), pp. 110984.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

مواضيع طبية MeSH: Bacteriophages*/genetics , Microbiota*, Genome, Viral/genetics ; Genomics ; Phylogeny

المؤلفون: Fremin BJ; Department of Energy, Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Kyrpides NC; Department of Energy, Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

المصدر: RNA biology [RNA Biol] 2022; Vol. 19 (1), pp. 678-685. Date of Electronic Publication: 2021 Dec 31.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101235328 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1555-8584 (Electronic) Linking ISSN: 15476286 NLM ISO Abbreviation: RNA Biol Subsets: MEDLINE

مواضيع طبية MeSH: CRISPR-Cas Systems* , RNA*/genetics, Genomics ; Operon ; Repetitive Sequences, Nucleic Acid

المؤلفون: Fremin BJ; Department of Genetics, Stanford University, Stanford, CA, USA., Nicolaou C; Divisions of Hematology and Blood & Marrow Transplantation, Department of Medicine, Stanford University, Stanford, CA, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, CA, USA. asbhatt@stanford.edu.; Divisions of Hematology and Blood & Marrow Transplantation, Department of Medicine, Stanford University, Stanford, CA, USA. asbhatt@stanford.edu.

المصدر: Nature protocols [Nat Protoc] 2021 Oct; Vol. 16 (10), pp. 4676-4691. Date of Electronic Publication: 2021 Aug 11.

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc

مواضيع طبية MeSH: Ribosomes*/metabolism , Ribosomes*/genetics , Feces*/microbiology , Microbiota*/genetics, Humans ; Metagenomics/methods ; Metagenome ; Bacteria/genetics ; Bacteria/classification ; High-Throughput Nucleotide Sequencing/methods ; Gastrointestinal Microbiome/genetics ; Ribosome Profiling

المؤلفون: Fremin BJ; Department of Genetics, Stanford University, Stanford, CA, 94305, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, CA, 94305, USA. asbhatt@stanford.edu.; Department of Medicine (Hematology), Stanford University, Stanford, CA, 94305, USA. asbhatt@stanford.edu.

المصدر: Genome biology [Genome Biol] 2021 Apr 12; Vol. 22 (1), pp. 100. Date of Electronic Publication: 2021 Apr 12.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Genomics*/methods , Metagenome* , Metagenomics*/methods , Microbiota*, Computational Biology/methods ; Gastrointestinal Microbiome ; Humans ; Nucleic Acid Conformation ; RNA ; Workflow

المؤلفون: Fremin BJ; Department of Genetics, Stanford University, Stanford, California, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, California, USA asbhatt@stanford.edu.; Department of Medicine (Hematology), Stanford University, Stanford, California, USA.

المصدر: MSphere [mSphere] 2020 Oct 21; Vol. 5 (5). Date of Electronic Publication: 2020 Oct 21.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101674533 Publication Model: Electronic Cited Medium: Internet ISSN: 2379-5042 (Electronic) Linking ISSN: 23795042 NLM ISO Abbreviation: mSphere Subsets: MEDLINE

مواضيع طبية MeSH: Escherichia coli/*genetics , RNA, Untranslated/*chemistry , RNA, Untranslated/*genetics , Ribosomes/*genetics, Computational Biology ; Gene Expression Profiling ; Sequence Analysis, RNA

المؤلفون: Fremin BJ; Department of Genetics, Stanford University, Stanford, CA, 94305, USA., Sberro H; Department of Genetics, Stanford University, Stanford, CA, 94305, USA.; Department of Medicine (Hematology & Blood and Marrow Transplantation), Stanford University, Stanford, CA, 94305, USA., Bhatt AS; Department of Genetics, Stanford University, Stanford, CA, 94305, USA. asbhatt@stanford.edu.; Department of Medicine (Hematology & Blood and Marrow Transplantation), Stanford University, Stanford, CA, 94305, USA. asbhatt@stanford.edu.

المصدر: Nature communications [Nat Commun] 2020 Jun 29; Vol. 11 (1), pp. 3268. Date of Electronic Publication: 2020 Jun 29.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Microbiota/*genetics , RNA-Seq/*methods, Metagenomics ; Protein Biosynthesis/genetics

المؤلفون: Sberro H; Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA., Fremin BJ; Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA., Zlitni S; Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA., Edfors F; Department of Genetics, Stanford University, Stanford, CA, USA., Greenfield N; One Codex, San Francisco, CA, USA., Snyder MP; Department of Genetics, Stanford University, Stanford, CA, USA., Pavlopoulos GA; Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA; Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center Alexander Fleming, Vari, Greece., Kyrpides NC; Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Bhatt AS; Department of Medicine (Hematology; Blood and Marrow Transplantation) and Genetics, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA. Electronic address: asbhatt@stanford.edu.

المصدر: Cell [Cell] 2019 Aug 22; Vol. 178 (5), pp. 1245-1259.e14. Date of Electronic Publication: 2019 Aug 08.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

مواضيع طبية MeSH: Microbiota*, Proteins/*metabolism, Amino Acid Sequence ; Cell Communication ; Host-Pathogen Interactions ; Humans ; Metagenome ; Open Reading Frames/genetics ; Proteins/chemistry ; Ribosomal Proteins/chemistry ; Ribosomal Proteins/metabolism ; Sequence Alignment