المؤلفون: Payen, Valéry L, Lavergne, Arnaud, Alevra Sarika, Niki, Colonval, Megan, Karim, Latifa, Deckers, Manon, Najimi, Mustapha, Coppieters, Wouter, CHARLOTEAUX, Benoit, Sokal, Etienne M, El Taghdouini, Adil

المصدر: JHEP Reports: Innovation in Hepatology, 3 (3), 100278 (2021-03-21)

مصطلحات موضوعية: BSA, bovine serum albumin, CC, cholangiocyte, CV, central vein, DEG, differentially expressed gene, EC, endothelial cell, ECM, extracellular matrix, Extracellular matrix, FFPE, formaldehyde-fixed paraffin embedded, GAG, glycosaminoglycan, GEO, Gene Expression Omnibus, GO, gene ontology, HEP, hepatocyte, HLA, human leukocyte antigen, HRP, horseradish peroxidase, HSC, hepatic stellate cell, Hepatocyte, ISH, in situ hybridisation, KLR, killer lectin-like receptor, LP, lymphoid cell, Liver cell atlas, MP, macrophage, MZ, midzonal, PC, pericentral, PP, periportal, PV, portal vein, TBS, Tris buffered saline, TSA, tyramide signal amplification, UMAP, uniform manifold approximation and projection, UMI, unique molecular identifier, VIM, vimentin, Zonation, scRNA-seq, single-cell RNA-sequencing, Immunology and Allergy, Internal Medicine, Hepatology, Gastroenterology, Human health sciences, Gastroenterology & hepatology, Sciences de la santé humaine, Gastroentérologie & hépatologie

Relation: https://api.elsevier.com/content/article/PII:S2589555921000549?httpAccept=text/xml; urn:issn:2589-5559; urn:issn:2589-5559

URL الوصول: https://orbi.uliege.be/handle/2268/288808

المؤلفون: Zihang Zeng, Yanping Gao, Jiali Li, Gong Zhang, Shaoxing Sun, Qiuji Wu, Yan Gong, Conghua Xie

المصدر: Computational and Structural Biotechnology Journal, Vol 20, Iss, Pp 496-507 (2022)
Computational and Structural Biotechnology Journal

مصطلحات موضوعية: AIC, Akaike information criterion, LUAD, Lung adenocarcinoma, TGCT, Testicular Germ Cell Tumors, Biochemistry, BLCA, Bladder Urothelial Carcinoma, Structural Biology, LGG, Brain Lower Grade Glioma, GEO, Gene Expression Omnibus, PAAD, Pancreatic adenocarcinoma, Proportional hazard assumption, MESO, Mesothelioma, SARC, Sarcoma, PRAD, Prostate adenocarcinoma, CHOL, Cholangiocarcinoma, DLBC, Lymphoid Neoplasm Diffuse Large B-cell Lymphoma, CESC, Cervical squamous cell carcinoma and endocervical adenocarcinoma, Computer Science Applications, STAD, Stomach adenocarcinoma, THCA, Thyroid carcinoma, TCGA, tumor abbreviations, Research Article, COAD, Colon adenocarcinoma, GBM, Glioblastoma multiforme, Biotechnology, LIHC, Liver hepatocellular carcinoma, Biophysics, Pan-cancer, OS, overall survival, KICH, Kidney Chromophobe, GO, Gene Ontology, Genetics, ACC, Adrenocortical carcinoma, CPH, Cox proportional hazard regression, KIRC, Kidney renal clear cell carcinoma, KIRP, Kidney renal papillary cell carcinoma, SKCM, Skin Cutaneous Melanoma, PCPG, Pheochromocytoma and Paraganglioma, ComputingMethodologies_COMPUTERGRAPHICS, READ, Rectum adenocarcinoma, OV, Ovarian serous cystadenocarcinoma, THYM, Thymoma, BRCA, Breast invasive carcinoma, UCEC, Uterine Corpus Endometrial Carcinoma, HNSC, Head and Neck squamous cell carcinoma, CON, Concordance regression, LUSC, Lung squamous cell carcinoma, UVM, Uveal Melanoma, TCGA, PH, proportional hazard, ESCA, Esophageal carcinoma, TCGA, The Cancer Genome Atlas, Transcriptome, UCS, Uterine Carcinosarcoma, TP248.13-248.65, Cox regression

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e9a789e1bce734644e6465871f3d75f
http://www.sciencedirect.com/science/article/pii/S2001037022000113

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المؤلفون: Guolong Liao, Hanqi Lei, Xiangwei Yang, Xing Fu, Fu Shi, Donggen Jiang, Haiyun Xiong, Yafei Yang, Yu-Peng Feng, Jun Pang, Bing-Biao Lin

المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 4941-4953 (2021)

مصطلحات موضوعية: Microarray, DFS, disease-free survival, MDSCs, myeloid-derived suppressor cells, AUC, Area under the dose-response curve, Biochemistry, k-NN, K-nearest neighbor, GEP, gene expression profile, Androgen deprivation therapy, Transcriptome, CTLA-4, cytotoxic T-lymphocyte associated protein-4, chemistry.chemical_compound, Prostate cancer, DEmiRs, differentially expressed miRNAs, SCNAs, somatic copy number alterations, Structural Biology, TGFβ, transforming growth factor β, BCR, biochemical recurrence, ICB, immune checkpoint blockade, GEO, Gene Expression Omnibus, NTP, Nearest template prediction, TMB, tumor mutation burden, PD-1, programmed cell death protein-1, NEPC, neuroendocrine prostate cancer, Computer Science Applications, NMF, non-negative matrix factorization, CCLs, cancer cell lines, Tregs, regulatory T cells, miRNAs, EMT, epithelial-mesenchymal transition, mCRPC, metastatic castration-resistant prostate cancer, Biotechnology, Research Article, FDR, false discovery rate, SubMap, Subclass mapping, Molecular subtypes, Biophysics, PCa, prostate cancer, Biology, KEGG, Kyoto Encyclopedia of Genes and Genomes, Olaparib, OS, overall survival, GSEA, Gene Set Enrichment Analysis, microRNA, GO, Gene Ontology, ssGSEA, single-sample gene set enrichment analysis, Genetics, medicine, TNAs, tumor neoantigens, PTEN, miRNAs, microRNAs, IFN, interferon, ADT, androgen deprivation therapy, ComputingMethodologies_COMPUTERGRAPHICS, Taxane, medicine.disease, PD-L1, programmed death-ligand 1, chemistry, Cancer research, biology.protein, TCGA, The Cancer Genome Atlas, MIRcor, miRNA-correlated, AR, androgen receptor, Heterogeneity, TP248.13-248.65, CAFs, cancer-associated fibroblasts

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f138460d0ba30547d9145ec00105384e
http://europepmc.org/articles/PMC8433071

المؤلفون: Ana Luisa Pedroso Ayub, Camila Ferreira de Souza, Hatylas Azevedo, Vinicius Ferreira da Paixão, Miriam Galvonas Jasiulionis, Debora D. Angelo Papaiz, Diogo de Oliveira Pessoa, Alice S. Morais, Flavia Eichemberger Rius, Jérémie Nsengimana, Eduardo M. Reis, Julia Newton-Bishop, João C. Setubal

المصدر: Neoplasia (New York, N.Y.)
Neoplasia: An International Journal for Oncology Research, Vol 23, Iss 4, Pp 439-455 (2021)
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

مصطلحات موضوعية: 0301 basic medicine, Cancer Research, Carcinogenesis, Cellular differentiation, Phenotypic switching, Cell Plasticity, EMT, Epithelial-to-Mesenchymal Transition, Metastasis, Phenotype switch, Mice, 0302 clinical medicine, GEO, Gene Expression Omnibus, Neoplasm Metastasis, Melanoma, Original Research, EMT, DEGs, Genes Differentially Expressed, lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens, Prognosis, Phenotype, Gene Expression Regulation, Neoplastic, 030220 oncology & carcinogenesis, AJCC, American Joint Committee on Cancer, Disease Progression, Melanocytes, Cellular model, MSS, Melanoma Specific Survival, Epithelial-Mesenchymal Transition, PCA, Principal Component Analysis, Biology, lcsh:RC254-282, 03 medical and health sciences, Downregulation and upregulation, Cell Line, Tumor, GO, Gene Ontology, medicine, Biomarkers, Tumor, Animals, Humans, RNA, Messenger, NSG, Next-Generation Sequencing, Sequence Analysis, RNA, Gene Expression Profiling, Malignancy, medicine.disease, Disease Models, Animal, 030104 developmental biology, Tumor progression, Cancer research, Transcriptome, PROGNÓSTICO

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::83e85a80d634e2fbd99d67272a5f9b1b
http://europepmc.org/articles/PMC8042650

المؤلفون: Min Xu, Fang Wang, Xiaoni Kong, Junzhe Jiao, Yueqiu Gao, Xuehua Sun, Hailong Wu, Jinyang Gu, Hualian Hang, Dongwei Xu, Jichang Li, Miao Huang

المصدر: Cellular and Molecular Gastroenterology and Hepatology
Cellular and Molecular Gastroenterology and Hepatology, Vol 12, Iss 2, Pp 567-584 (2021)

مصطلحات موضوعية: 0301 basic medicine, Male, DJ-1, Protein Deglycase DJ-1, CQ, chloroquine, MPO, myeloperoxidase, RC799-869, AST, aspartate aminotransferase, Mitochondrion, PARKIN, Parkin, 0302 clinical medicine, Mitophagy, Medicine, Myeloid Cells, GEO, Gene Expression Omnibus, Original Research, Liver injury, Mice, Knockout, TNF, tumor necrosis factor, LDH, lactate dehydrogenase, Protein Stability, Gastroenterology, qRT-PCR, quantitative real-time polymerase chain reaction, TEM, transmission electron microscope, Diseases of the digestive system. Gastroenterology, I/R, ischemia-reperfusion, Mitochondria, Protein Transport, Real-time polymerase chain reaction, Liver, Reperfusion Injury, Knockout mouse, 030211 gastroenterology & hepatology, OMM, outer mitochondrial membrane, medicine.medical_specialty, Ubiquitin-Protein Ligases, IHC, immunohistochemical, Down-Regulation, Protective Agents, 03 medical and health sciences, Liver I/R Injury, ΔΨm, mitochondrial membrane potential, Internal medicine, ALT, alanine aminotransferase, H/R, hypoxia/reoxygenation, Autophagy, Animals, PD, Parkinson’s disease, Inflammation, KO, knockout, Hepatology, business.industry, Dj-1-/-, global Dj-1 knockout, medicine.disease, WT, wild-type, IL, interleukin, mtDNA, mitochondrial DNA, 030104 developmental biology, Endocrinology, PINK1, PTEN-induced kinase-1, Hepatocytes, business, Reperfusion injury, 3-MA, 3-methyladenine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02a2bef2e703fa3d8ef38d5240ce768c
http://europepmc.org/articles/PMC8258983

المؤلفون: Huihuang Yan, Khashayarsha Khazaie, Gianrico Farrugia, Sabriya A. Syed, Michelle Wehling-Henricks, Makoto Kuro-o, Simon J. Gibbons, Sergiy M. Kvasha, David T. Asuzu, Rea A. Nagy, Eduardo N. Chini, Mahendra Pal Singh, Yujiro Hayashi, David R. Linden, James G. Tidball, Gabriella B. Gajdos, Michael R. Bardsley, Jair Machado Espindola Netto, Siva Arumugam Saravanaperumal, Todd A. Kellogg, Tamas Ordog, Yoshitaka Toyomasu

المصدر: Cellular and Molecular Gastroenterology and Hepatology, Vol 11, Iss 1, Pp 117-145 (2021)
Cellular and Molecular Gastroenterology and Hepatology

مصطلحات موضوعية: PE, R-phycoerythrin, Male, 0301 basic medicine, CL.CASP3, cleaved caspase 3, Aging, Cell cycle checkpoint, BrdU, 5-bromo-2′-deoxyuridine, DMSO, dimethyl sulfoxide, Mice, 0302 clinical medicine, APC, allophycocyanin, ERK, extracellular signal-regulated kinase, GSEA, gene set enrichment analysis, GEO, Gene Expression Omnibus, NES, normalized enrichment score, TRP53, transformation related protein 53, Wnt Signaling Pathway, Klotho, ANOVA, analysis of variance, Cellular Senescence, Original Research, SA-β-gal, senescence-associated beta-galactosidase, KIT, v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog, Stomach, EdU, 5-ethynyl-2′-deoxyuridine, Gastroenterology, Wnt signaling pathway, MTS, methyltetrazolium salt, ICC, interstitial cells of Cajal, Middle Aged, CDKN1A, cyclin-dependent kinase inhibitor 1a, Up-Regulation, Cell biology, CTNNB1, catenin beta 1, GAPDH, glyceraldehyde-3-phosphate dehydrogenase, Models, Animal, symbols, Female, 030211 gastroenterology & hepatology, ANO1, anoctamin-1, RPKM, reads per kilobase of transcript per million mapped reads, Stem cell, Compliance, Senescence, SESN, sestrin, tsTAg, tsA58-mutant SV40 large T antigen, Adenomatous Polyposis Coli Protein, FDR Q, false discovery rate Q value, Mice, Transgenic, KLF4, Kruppel-like factor 4, Biology, DDR, DNA damage response, PI, propidium iodide, Young Adult, 03 medical and health sciences, symbols.namesake, Cyclin D1, RT-qPCR, real-time quantitative reverse-transcription polymerase chain reaction, Stem Cell, MEK, mitogen-activated protein kinase kinase, Animals, Humans, Kinase activity, lcsh:RC799-869, Klotho Proteins, CCND1, cyclin D1, Hepatology, WB, Western immunoblotting, RNA-seq, RNA sequencing, Cell Cycle Checkpoints, Interstitial Cells of Cajal, CDKN1B, cyclin-dependent kinase inhibitor 2B, WT, wild-type, Interstitial cell of Cajal, 030104 developmental biology, siRNA, small interfering RNA, ETV1, ets variant 1, ICC-SC, interstitial cells of Cajal stem cells, lcsh:Diseases of the digestive system. Gastroenterology, Tumor Suppressor Protein p53, MYC, myelocytomatosis oncogene, DAPI, 4′,6-diamidino-2-phenylindole

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb1a15d90b0466d35d9517a3a039e81b
http://www.sciencedirect.com/science/article/pii/S2352345X2030117X

المؤلفون: Yulong He, Jianbo Xu, Peng Shi, Xinde Ou, Wen Zhou, Shirong Cai, Jin Li, Yujie Yuan, Jianjun Peng, Taiqiang Su, Liangliang Lin, Qinbo Cai

المصدر: Cellular and Molecular Gastroenterology and Hepatology, Vol 11, Iss 3, Pp 857-880 (2021)
Cellular and Molecular Gastroenterology and Hepatology

مصطلحات موضوعية: 0301 basic medicine, Chemokine, Atrophic gastritis, RELA, RELA proto-oncogene, nuclear factor-κB subunit, TP53, tumor protein p53, BrdU, bromodeoxyuridine, Chemokine receptor, 0302 clinical medicine, CG, chronic gastritis, GSEA, gene set enrichment analysis, CXCL, C-X-C motif chemokine ligand, GEO, Gene Expression Omnibus, CXC chemokine receptors, Helicobacter, MOI, multiplicity of infection, Original Research, biology, H pylori, Gastroenterology, IM, intestinal metaplasia, MNU, N-methyl-N-nitrosourea, mRNA, messenger RNA, PMSS1, pre-mouse Sydney strain 1, ChIP, chromatin immunoprecipitation, medicine.anatomical_structure, CXCR2, C-X-C motif chemokine receptor 2, qPCR, quantitative polymerase chain reaction, 030211 gastroenterology & hepatology, CagA, cytotoxin-associated gene A, CDKN, cyclin-dependent kinase inhibitor, Gastritis, Atrophic, Senescence, PBS, phosphate-buffered saline, IHC, immunohistochemical, NF-κB, nuclear factor-κB, SASP, senescence-associated secretory phenotype, C-X-C Motif Chemokine Receptor 2, NFKB1, nuclear factor-κB subunit 1, Helicobacter Infections, Senescent Cell, 03 medical and health sciences, Gastric mucosa, medicine, Humans, lcsh:RC799-869, Helicobacter pylori, Hepatology, Mucosa Atrophy, AG, atrophic gastritis, biology.organism_classification, medicine.disease, IL, interleukin, 030104 developmental biology, biology.protein, Cancer research, lcsh:Diseases of the digestive system. Gastroenterology, DP, dysplasia, Atrophy

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d51feee4d86b3f3b985a29b089d53c44
http://www.sciencedirect.com/science/article/pii/S2352345X2030179X

المؤلفون: Qiong Chen, Bingrong Zhao, Lu Bai, Juan Jiang, Wang Ya, Yuanyuan Li, Chengping Hu, Changjing Cai, Rongjun Wan

المصدر: Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 6386-6399 (2021)
Computational and Structural Biotechnology Journal

مصطلحات موضوعية: TIME, tumor immune microenvironment, Lung adenocarcinoma, RT-qPCR, Real-time Quantitative Polymerase Chain Reaction, medicine.medical_treatment, CCLE, Cancer Cell Line Encyclopedia, Biochemistry, GSVA, gene set variation analysis, PBMC, Peripheral Blood Mononuclear Cell, AUC, area under the curve, Structural Biology, TPM, transcripts per kilobase million, GEO, Gene Expression Omnibus, Small nucleolar RNAs, Small nucleolar RNA, Stage (cooking), RSF, random survival forest, ICIs, immune checkpoints inhibitors, NK cell, natural killer cell, snoRNAs, small nucleolar RNAs, LUAD, lung adenocarcinoma, Computer Science Applications, Real-time polymerase chain reaction, medicine.anatomical_structure, Adenocarcinoma, Research Article, Biotechnology, Biophysics, Peripheral blood mononuclear cell, Tumor cell immune infiltration, HIC, immunohistochemistry, Immune system, TIISR signature, ssGSEA, single-sample gene set enrichment analysis, Genetics, medicine, IF, immunofluorescence, ComputingMethodologies_COMPUTERGRAPHICS, GO, gene ontology, Lung, business.industry, TIISR, tumor-infiltrating immune-related snoRNA, Immunotherapy, medicine.disease, HR, hazard ratio, ROC, receiver operating characteristic, Cancer research, Immune checkpoints, TCGA, The Cancer Genome Atlas, FPKM, fragments per kilobase of transcript per million, business, TSI, tissue specificity index, TP248.13-248.65, ncRNA, noncoding RNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e2d4043c8554ee6af7977744fd1f51b
http://www.sciencedirect.com/science/article/pii/S2001037021004979