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1دورية أكاديمية
المؤلفون: Laura Meyer, Baptiste Courtin, Maïté Gomard, Abdelkader Namane, Emmanuelle Permal, Gwenael Badis, Alain Jacquier, Micheline Fromont-Racine
المصدر: PLoS ONE, Vol 18, Iss 11, p e0293228 (2023)
وصف الملف: electronic resource
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المؤلفون: Antonia Doyen, Alicia Nevers, Christophe Malabat, Bertrand Néron, Gwenael Badis, Thomas Kergrohen, Alain Jacquier
المساهمون: Génétique des Interactions macromoléculaires, Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris], Université Pierre et Marie Curie - Paris 6 (UPMC), Centre de Bioinformatique, Biostatistique et Biologie Intégrative (C3BI), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Pasteur Institute, the Centre National de la Recherche Scientifique and the Agence Nationale pour la Recherche [ANR-14-CE-10-0014-01, 2014], A.N. received Fellowships from the French Ministry of Research and from the Fondation pour la Recherche Médicale [FDT20160435375, 2016]. Funding for open access charge: Agence Nationale pour la Recherche [ANR-14-CE-10-0014-01, 2014]., We thank Frank Feuerbach for providing strains LMA2811 and LMA2819. We thank Bernard Turcotte, Cosmin Saveanu and Micheline Fromont-Racine for discussions and critical reading of the manuscript. We acknowledge Jean Yves Coppee and Caroline Proux for the facilities and expertise of the Transcriptomic Platform (PF2) for cDNA libraries sequencing., Génétique des Interactions macromoléculaires / Genetics of Macromolecular Interactions, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Génétique des génomes - Genetics of Genomes (UMR 3525), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Institut Pasteur [Paris] (IP)
المصدر: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2018, 46 (12), pp.6009-6025. ⟨10.1093/nar/gky342⟩
Nucleic Acids Research, 2018, 46 (12), pp.6009-6025. ⟨10.1093/nar/gky342⟩مصطلحات موضوعية: 0301 basic medicine, Saccharomyces cerevisiae Proteins, Mutant, MESH: Gene Expression Regulation, Fungal, Saccharomyces cerevisiae, Biology, Transcriptome, 03 medical and health sciences, 0302 clinical medicine, MESH: Saccharomyces cerevisiae/metabolism, Transcription (biology), Gene Expression Regulation, Fungal, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Sense (molecular biology), Gene expression, medicine, Genetics, RNA, Antisense, RNA, Messenger, MESH: RNA Polymerase II/metabolism, Gene, Psychological repression, 030304 developmental biology, Regulation of gene expression, MESH: Saccharomyces cerevisiae/genetics, 0303 health sciences, Messenger RNA, MESH: RNA Helicases/genetics, 030302 biochemistry & molecular biology, Gene regulation, Chromatin and Epigenetics, Promoter, medicine.disease, Chromatin, Cell biology, MESH: RNA, Antisense/biosynthesis, MESH: Saccharomyces cerevisiae Proteins/genetics, 030104 developmental biology, MESH: Gene Deletion, RNA Polymerase II, MESH: Transcription Initiation Site, Transcription Initiation Site, Transcriptional noise, 030217 neurology & neurosurgery, Gene Deletion, RNA Helicases
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6025e7be12b7d285ac756d69d1201269
https://hal.archives-ouvertes.fr/hal-02349600 -
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المؤلفون: Lourdes Peña-Castillo, Gwenael Badis
المساهمون: Memorial University of Newfoundland [St. John's], Génétique des Interactions macromoléculaires, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), G.B. work was supported by the CIHR, the Institut Pasteur and the Centre National pour la Recherche Scientifique. LPC’s work was supported by a NSERC Discovery Grant and Memorial University of Newfoundland., Frédéric Devaux, Memorial University of Newfoundland = Université Memorial de Terre-Neuve [St. John's, Canada] (MUN), Génétique des Interactions macromoléculaires / Genetics of Macromolecular Interactions, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
المصدر: Yeast Functional Genomics
Frédéric Devaux. Yeast Functional Genomics, 1361, Humana Press, pp.203-225, 2016, Methods in Molecular Biology, 978-1-4939-3079-1. ⟨10.1007/978-1-4939-3079-1_12⟩
Methods in Molecular Biology ISBN: 9781493930784مصطلحات موضوعية: 0301 basic medicine, Binding sites, [SDV]Life Sciences [q-bio], Regulome, Computational biology, Biology, DNA-binding protein, DNA binding domain, 03 medical and health sciences, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Enhancers, Transcription factors, MESH: Protein Binding, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Binding site, Enhancer, Transcription factor, Gene, MESH: Protein Array Analysis, MESH: DNA, DNA-binding domain, Transcription regulation, cis-regulatory element, MESH: Transcription Factors, Molecular biology, MESH: Saccharomyces cerevisiae, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], 030104 developmental biology, MESH: Binding Sites, DNA microarray, MESH: DNA-Binding Proteins
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e473370862e2d8402b8fd05098af684e
https://hal.archives-ouvertes.fr/hal-02356251 -
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المؤلفون: Lourdes, Peña-Castillo, Gwenael, Badis
المصدر: Methods in molecular biology (Clifton, N.J.). 1361
مصطلحات موضوعية: DNA-Binding Proteins, Binding Sites, Protein Array Analysis, DNA, Saccharomyces cerevisiae, Protein Binding, Transcription Factors
URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::db0519da6455d1f54b36f50786bb22e7
https://pubmed.ncbi.nlm.nih.gov/26483024 -
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المؤلفون: Shaheynoor Talukder, Savina Jaeger, Lourdes Peña-Castillo, Quaid Morris, Gwenael Badis, Sanie Mnaimneh, Olga B. Botvinnik, Esther T. Chan, Anthony A. Philippakis, Andrew R. Gehrke, Trevis M. Alleyne, Martha L. Bulyk, Wen Zhang, Daniel E. Newburger, Timothy P. Hughes, Michael F. Berger, Faiqua Khalid
المساهمون: Harvard Medical School [Boston] (HMS), University of Toronto
المصدر: Cell
Cell, Elsevier, 2008, 133 (7), pp.1266-1276. ⟨10.1016/j.cell.2008.05.024⟩مصطلحات موضوعية: Models, Molecular, Plasma protein binding, Biology, Genome, Article, General Biochemistry, Genetics and Molecular Biology, Conserved sequence, Evolution, Molecular, Mice, 03 medical and health sciences, chemistry.chemical_compound, 0302 clinical medicine, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Animals, Binding site, Conserved Sequence, 030304 developmental biology, Sequence (medicine), Homeodomain Proteins, Genetics, 0303 health sciences, Base Sequence, Biochemistry, Genetics and Molecular Biology(all), Computational Biology, DNA, DNA binding site, chemistry, Evolutionary biology, Homeobox, 030217 neurology & neurosurgery, Protein Binding, Transcription Factors
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المؤلفون: Jocelyne Boulay, Domenico Libri, Françoise Wyers, Béatrice Regnault, Mathieu Rougemaille, Frédéric Devaux, Abdelkader Namane, Jean-Claude Rousselle, Gwenael Badis, Bertrand Séraphin, Marie-Elisabeth Dufour, Alain Jacquier
المصدر: Cell. 121:725-737
مصطلحات موضوعية: Transcriptome, Genetics, Biochemistry, Genetics and Molecular Biology(all), Exosome complex, TRAMP complex, biology.protein, RNA polymerase I, RNA polymerase II, RNA-binding protein, Biology, General Biochemistry, Genetics and Molecular Biology, RNA polymerase III, Polymerase
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المؤلفون: Gwenael Badis, Cosmin Saveanu, Antonio Díaz-Quintana, Alain Jacquier, Abdelkader Namane, Reyes Babiano, Micheline Fromont-Racine, Antonia Doyen, Jesús de la Cruz
المساهمون: Departamento de Genética, Génétique des Interactions macromoléculaires, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Universidad de Sevilla, Spanish Ministry of Science and Innovation and ERDF[BFU2010-15690 and FR2009-0102], AndalusianGovernment [CVI-271 and P08-CVI-03508 to J.d.l.C.], Agence Nationale de la Recherche [ANR-2011-BSV6-011-785 02], EGIDE Picasso Programme (to M.F-R.), recipient of an FPI fellowship from the Andalusian Government (to R.B.). Funding for open access charge:Spanish Ministry of Science and Innovation and ERDF[BFU2010-15690 to J.d.l.C.]., ANR-11-BSV6-0011,NGD-NSD,Rôle du NSD/NGD: identification des gènes cibles et des facteurs impliqués dans ces mécanismes chez Saccharomyces cerevisiae(2011), Génétique des Interactions macromoléculaires / Genetics of Macromolecular Interactions, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Universidad de Sevilla / University of Sevilla
المصدر: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2013, 41 (20), pp.9461--9470. ⟨10.1093/nar/gkt726⟩
Nucleic Acids Research, 2013, 41 (20), pp.9461--9470. ⟨10.1093/nar/gkt726⟩مصطلحات موضوعية: Ribosomal Proteins, 5S, Saccharomyces cerevisiae Proteins, [SDV]Life Sciences [q-bio], Molecular Sequence Data, Biology, Ribosome assembly, 03 medical and health sciences, 5S ribosomal RNA, Ribosomal protein, Genetics, RNA Precursors, Ribosome Subunits, Eukaryotic Small Ribosomal Subunit, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, 030304 developmental biology, 50S, Ribosomal, 0303 health sciences, Binding Sites, Base Sequence, Eukaryotic Large Ribosomal Subunit, 030302 biochemistry & molecular biology, RNA, Ribosomal, 5S, Ribosome Subunits, Large, Eukaryotic, Ribosomal RNA, Molecular biology, Cell biology, RNA, Ribosomal, Large, Eukaryotic, RNA, Eukaryotic Ribosome
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df1caca7b45b2315dbb199d1c54f9a5f
https://hal-pasteur.archives-ouvertes.fr/pasteur-01404017/document -
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المؤلفون: Gwenael Badis, Timothy P. Hughes, Jennifer Tsai, Shoshana J. Wodak, Martha L. Bulyk, Michael F. Berger, Miguel A. Santos, Andrew R. Gehrke, Andrei L. Turinsky, Shaheynoor Talukder, Serene Ong
المساهمون: Harvard University--MIT Division of Health Sciences and Technology, Bulyk, Martha L., Banting and Best Department of Medical Research, University of Toronto
المصدر: Oxford
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2010, 38 (22), pp.7927-7942. ⟨10.1093/nar/gkq714⟩مصطلحات موضوعية: Subfamily, [SDV]Life Sciences [q-bio], Computational biology, Biology, DNA sequencing, 03 medical and health sciences, chemistry.chemical_compound, Mice, 0302 clinical medicine, Sequence Analysis, Protein, Genetics, Animals, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, Homeodomain Proteins, 0303 health sciences, Robustness (evolution), Experimental data, Computational Biology, DNA, In vitro, 3. Good health, chemistry, Homeobox, DNA microarray, 030217 neurology & neurosurgery
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::232258ec8d53868f68f257a2b40515de
http://hdl.handle.net/1721.1/70985 -
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المؤلفون: Mikko P. Turunen, Esko Ukkonen, Gong-Hong Wei, Martha L. Bulyk, Andrew R. Gehrke, Hendrik G. Stunnenberg, Michael F. Berger, Martin Bonke, Jussi Taipale, Arttu Jolma, Gwenael Badis, Markku Varjosalo, Teemu Kivioja, Jian Yan, Martin Enge, Timothy P. Hughes, Shaheynoor Talukder, Mikko Taipale, Kimmo Palin
المساهمون: Banting and Best Department of Medical Research, University of Toronto, Genome-Scale Biology (GSB) Research Program, Department of Computer Science, Bioinformatics
المصدر: EMBO Journal, 29, 13, pp. 2147-2160
The EMBO Journal
EMBO Journal
EMBO Journal, EMBO Press, 2010, 29 (13), pp.2147-2160. ⟨10.1038/emboj.2010.106⟩
EMBO Journal, 29, 2147-2160مصطلحات موضوعية: Models, Molecular, WEB TOOL, [SDV]Life Sciences [q-bio], ETV1, Mice, 0302 clinical medicine, DOMAIN TRANSCRIPTION FACTORS, 311 Basic medicine, SERUM RESPONSE FACTOR, CRYSTAL-STRUCTURE, TERNARY COMPLEXES, ComputingMilieux_MISCELLANEOUS, GENE-EXPRESSION, DNA-binding specificity, Genetics, 0303 health sciences, ETS family of transcription factors, General Neuroscience, Proto-Oncogene Proteins c-ets, PROSTATE-CANCER, 3. Good health, ChIP-seq, 030220 oncology & carcinogenesis, FLI1, DNA microarray, Protein Binding, Sequence analysis, education, Biology, EWINGS-SARCOMA, General Biochemistry, Genetics and Molecular Biology, Article, Cell Line, 03 medical and health sciences, cancer, Animals, Humans, Binding site, FALSE POSITIVES, Transcription factor, Molecular Biology, 030304 developmental biology, Binding Sites, General Immunology and Microbiology, Base Sequence, transcription factor-DNA binding assay, DNA, Sequence Analysis, DNA, Chromatin immunoprecipitation, Genome-Wide Association Study
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المؤلفون: Timothy P. Hughes, Chi-Fong Wang, Savina Jaeger, Michael F. Berger, Xiaoyu Chen, Quaid Morris, Daniel E. Newburger, Gwenael Badis, Shaheynoor Talukder, Genita Metzler, Martha L. Bulyk, Andrew R. Gehrke, Anthony A. Philippakis, Hanna Kuznetsov, Anastasia Vedenko, Esther T. Chan, David Coburn
المساهمون: Banting and Best Department of Medical Research, University of Toronto
المصدر: Science
Science, American Association for the Advancement of Science, 2009, 324 (5935), pp.1720-1723. ⟨10.1126/science.1162327⟩مصطلحات موضوعية: Recombinant Fusion Proteins, [SDV]Life Sciences [q-bio], Amino Acid Motifs, Protein Array Analysis, Electrophoretic Mobility Shift Assay, Computational biology, Biology, DNA-binding protein, Article, 03 medical and health sciences, chemistry.chemical_compound, Mice, 0302 clinical medicine, Molecular evolution, Animals, Humans, Gene Regulatory Networks, Amino Acid Sequence, Binding site, Transcription factor, ComputingMilieux_MISCELLANEOUS, 030304 developmental biology, Genetics, 0303 health sciences, Multidisciplinary, Binding Sites, Base Sequence, DNA, Protein Structure, Tertiary, DNA binding site, chemistry, Gene Expression Regulation, DNA microarray, Sequence motif, 030217 neurology & neurosurgery, Protein Binding, Transcription Factors
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41b012b5e637b28515f1af55844f648f
https://hal.archives-ouvertes.fr/hal-03032749
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