المؤلفون: Akbari, Amir, Haiman, Zachary, Palsson, Bernhard

المصدر: mSystems. 9(2)

مصطلحات موضوعية: coherent structures, data-driven approach, dynamic-mode decomposition, kinetic models, timescale decomposition, Kinetics, Cell Physiological Phenomena, Glycolysis, Phosphates

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/04709521

المؤلفون: Shaikh, Bilal, Smith, Lucian P., Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S., Anwar, Azraf, Beber, Moritz E., Bergmann, Frank T., Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G. Bard, Faeder, James R., Freiburger, Andrew P., Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H., Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hellerstein, Joseph L., Hoops, Stefan, Ison, Jon C., Jahn, Diego, Jakubowski, Henry V., Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Mandal, Synchon, McDougal, Robert, Medley, J. Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J., Naldi, Aurelien, Nguyen, Tung V. N., Nickerson, David P., Olivier, Brett G., Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R., Priya, Ankita, Rampadarath, Anand K., Rohwer, Johann M., Saglam, Ali S., Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J., van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P., Blinov, Michael L., Sauro, Herbert M., Moraru, Ion I., Karr, Jonathan R.

مصطلحات موضوعية: Quantitative Biology - Quantitative Methods, Computer Science - Computational Engineering, Finance, and Science, Quantitative Biology - Molecular Networks

URL الوصول: http://arxiv.org/abs/2203.06732

المؤلفون: Haiman, Zachary B, Zielinski, Daniel C, Koike, Yuko, Yurkovich, James T, Palsson, Bernhard O

المصدر: PLoS computational biology. 17(1)

مصطلحات موضوعية: Bioinformatics, Mathematical Sciences, Biological Sciences, Information and Computing Sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/12j2878v

المؤلفون: Heckmann, David, Lloyd, Colton J, Mih, Nathan, Ha, Yuanchi, Zielinski, Daniel C, Haiman, Zachary B, Desouki, Abdelmoneim Amer, Lercher, Martin J, Palsson, Bernhard O

المصدر: Nature communications. 9(1)

مصطلحات موضوعية: Escherichia coli, Escherichia coli Proteins, Proteome, Kinetics, Algorithms, Models, Biological, Metabolic Networks and Pathways, Biocatalysis, Machine Learning, Models, Biological

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/4vc6x99z

المؤلفون: Yurkovich, James T, Alcantar, Miguel A, Haiman, Zachary B, Palsson, Bernhard O

المصدر: PLoS computational biology. 14(8)

مصطلحات موضوعية: Humans, Phosphofructokinase-1, Hexokinase, Pyruvate Kinase, Ligands, Allosteric Regulation, Protein Binding, Glycolysis, Kinetics, Catalysis, Thermodynamics, Computer Simulation, Biophysical Phenomena, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/50f808hz

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المؤلفون: Nemkov T; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA; Omix Technologies Inc., Aurora, CO, USA., Stephenson D; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA., Earley EJ; RTI International, Atlanta, GA, USA., Keele GR; Jackson Laboratory, Bar Harbor, ME, USA., Hay A; Department of Pathology, University of Virginia, Charlottesville, VA, USA., Key A; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA., Haiman ZB; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA., Erickson C; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA., Dzieciatkowska M; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA., Reisz JA; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA., Moore A; RTI International, Atlanta, GA, USA., Stone M; Vitalant Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA., Deng X; Vitalant Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA., Kleinman S; University of British Columbia, Victoria, BC, Canada., Spitalnik SL; Department of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Hod EA; Department of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Hudson KE; Department of Pathology & Cell Biology, Columbia University Irving Medical Center, New York, NY, USA., Hansen KC; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA; Omix Technologies Inc., Aurora, CO, USA., Palsson BO; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA., Churchill GA; Jackson Laboratory, Bar Harbor, ME, USA., Roubinian N; Vitalant Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA; Kaiser Permanente Northern California Division of Research, Oakland, CA, USA., Norris PJ; Vitalant Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA., Busch MP; Vitalant Research Institute, San Francisco, CA, USA; Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA, USA., Zimring JC; Department of Pathology, University of Virginia, Charlottesville, VA, USA., Page GP; RTI International, Atlanta, GA, USA., D'Alessandro A; Department of Biochemistry and Molecular Genetics, University of Colorado Denver - Anschutz Medical Campus, Aurora, CO, USA; Omix Technologies Inc., Aurora, CO, USA. Electronic address: angelo.dalessandro@cuanschutz.edu.

المصدر: Cell metabolism [Cell Metab] 2024 Jun 27. Date of Electronic Publication: 2024 Jun 27.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101233170 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1932-7420 (Electronic) Linking ISSN: 15504131 NLM ISO Abbreviation: Cell Metab Subsets: MEDLINE

المؤلفون: Akbari A, Haiman ZB, Palsson BO

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Aug 22. Date of Electronic Publication: 2023 Aug 22.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Shaikh B; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Smith LP; University of Washington, Seattle, WA 98105, USA., Vasilescu D; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Marupilla G; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Wilson M; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Agmon E; Stanford University, Stanford, CA 94305, USA., Agnew H; LibreTexts, USA., Andrews SS; University of Washington, Seattle, WA 98105, USA., Anwar A; New York University, Brooklyn, NY 11201, USA., Beber ME; Unseen Bio ApS, 2100 København Ø, Denmark., Bergmann FT; Heidelberg University, 69120 Heidelberg, Germany., Brooks D; University of Auckland, 1010 Auckland, New Zealand., Brusch L; Technical University of Dresden, 01187 Dresden, Germany., Calzone L; Institut Curie, 75248 Paris, France., Choi K; Korea Institute for Advanced Study, 02455 Seoul, South Korea., Cooper J; University of North Carolina, Asheville, Ashville, NC 28804, USA., Detloff J; Independent, Madison, WI 53705, USA., Drawert B; University of North Carolina, Asheville, Ashville, NC 28804, USA., Dumontier M; Maastricht University, 6200 Maastricht, Netherlands., Ermentrout GB; University of Pittsburgh, Pittsburgh, PA 15260, USA., Faeder JR; University of Pittsburgh, Pittsburgh, PA 15260, USA., Freiburger AP; University of Victoria, Victoria, BC V8P 5C2, Canada., Fröhlich F; Harvard Medical School, Boston, MA 02115, USA., Funahashi A; Keio University, Yokohama 223-8522, Japan., Garny A; University of Auckland, 1010 Auckland, New Zealand., Gennari JH; University of Washington, Seattle WA 98019, USA., Gleeson P; University College London, London WC1E 6BT, UK., Goelzer A; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Haiman Z; University of California, San Diego, La Jolla, CA 92093, USA., Hasenauer J; Universität Bonn, 53115 Bonn, Germany., Hellerstein JL; University of Washington, Seattle, WA 98105, USA., Hermjakob H; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Hoops S; University of Virginia, Charlottesville, VA 22904, USA., Ison JC; CNRS, UMS 3601, Institut Français de Bioinformatique, IFB-core, 91000 Évry-Courcouronnes, France., Jahn D; Technical University of Dresden, 01187 Dresden, Germany., Jakubowski HV; College of Saint Benedict and Saint John's University, St. Joseph, MN 56374, USA., Jordan R; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Kalaš M; University of Bergen, 5020 Bergen, Norway., König M; Humboldt University of Berlin, 10115 Berlin, Germany., Liebermeister W; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Sheriff RSM; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Mandal S; Technical University of Dresden, 01069 Dresden, Germany., McDougal R; Yale University, New Haven, CT 06511, USA., Medley JK; Autodesk, Inc., San Rafael, CA 94903, USA., Mendes P; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Müller R; Technical University of Dresden, 01187 Dresden, Germany., Myers CJ; University of Colorado at Boulder, Boulder CO, 80309, USA., Naldi A; Inria Saclay - Île-de-France Research Centre, 91120 Palaiseau, France., Nguyen TVN; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Nickerson DP; University of Auckland, 1010 Auckland, New Zealand., Olivier BG; Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, Netherlands., Patoliya D; Sarvajanik College of Engineering & Technology, Surat, Gujarat 395001, India., Paulevé L; Centre National de la Recherche Scientifique, 33400 Talence, France., Petzold LR; University of California, Santa Barbara, Santa Barbara, CA 93106, USA., Priya A; Birla Institute of Technology, Mesra, Jharkhand 835215, India., Rampadarath AK; University of Auckland, 1010 Auckland, New Zealand., Rohwer JM; Stellenbosch University, Stellenbosch, 7600, South Africa., Saglam AS; University of Pittsburgh, Pittsburgh, PA 15260, USA., Singh D; Subconscious Compute Pvt. Ltd., Bangalore, India., Sinha A; University College London, London, WC1E 6BT, UK., Snoep J; Stellenbosch University, Stellenbosch, 7600, South Africa., Sorby H; University of Auckland, 1010 Auckland, New Zealand., Spangler R; Allen Institute for Cell Science, Seattle, WA 98109, USA., Starruß J; Technical University of Dresden, 01187 Dresden, Germany., Thomas PJ; University of Utah, Salt Lake City, UT 84112, USA., van Niekerk D; Stellenbosch University, Stellenbosch, 7600, South Africa., Weindl D; Helmholtz Zentrum München GmbH and German Research Center for Environmental Health, 85764 Neuherberg, Germany., Zhang F; National Institutes of Health, Bethesda, MD 20892, USA., Zhukova A; Institut Pasteur, 75015 Paris, France., Goldberg AP; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Schaff JC; University of Connecticut School of Medicine, Farmington, CT 06030, USA.; Applied BioMath LLC, Concord, MA 01742, USA., Blinov ML; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Sauro HM; University of Washington, Seattle, WA 98105, USA., Moraru II; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Karr JR; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

المصدر: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W108-W114.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: Computer Simulation* , Software*, Humans ; Bioengineering ; Models, Biological ; Registries ; Research Personnel