المؤلفون: Zhou, A, Hillesland, KL, He, Z, Schackwitz, W, Tu, Q, Zane, GM, Ma, Q, Qu, Y, Stahl, DA, Wall, JD, Hazen, TC, Fields, MW, Arkin, AP, Zhou, J

المصدر: The ISME journal, vol 9, iss 11
Zhou, A; Hillesland, KL; He, Z; Schackwitz, W; Tu, Q; Zane, GM; et al.(2015). Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris. ISME Journal, 9(11), 2360-2372. doi: 10.1038/ismej.2015.45. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/90g9t37j

مصطلحات موضوعية: Salinity, Technology, Genotype, Evolution, Physiological, DNA Mutational Analysis, Sodium Chloride, Microbiology, Environmental, Gene Frequency, Genetic, Genetics, Site-Directed, Desulfovibrio vulgaris, Biomass, Adaptation, Polymorphism, Human Genome, Molecular, Heavy, Salt Tolerance, Biological Sciences, Phenotype, Metals, Mutagenesis, Mutation, Biodegradation, Sulfur, Salt-Tolerance, Environmental Sciences

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URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::0dafd9e4a3084d7832dea7e0eed8fb2c
https://escholarship.org/uc/item/90g9t37j

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المؤلفون: Turkarslan S; Institute for Systems Biology, Seattle, WA, 98109, USA., Stopnisek N; Civil and Environmental Engineering, University of Washington, Seattle, WA, 98195, USA., Thompson AW; Department of Biology, Portland State University, Portland, OR, 97201, USA., Arens CE; Institute for Systems Biology, Seattle, WA, 98109, USA., Valenzuela JJ; Institute for Systems Biology, Seattle, WA, 98109, USA., Wilson J; Institute for Systems Biology, Seattle, WA, 98109, USA., Hunt KA; Civil and Environmental Engineering, University of Washington, Seattle, WA, 98195, USA., Hardwicke J; Civil and Environmental Engineering, University of Washington, Seattle, WA, 98195, USA., de Lomana ALG; University of Iceland, Reykjavík, Iceland., Lim S; Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, 91125, USA., Seah YM; Biological Sciences, University of Washington Bothell, Bothell, WA, 98011, USA., Fu Y; Institute for Environmental Genomics and Department of Microbiology & Plant Biology, University of Oklahoma, Norman, OK, 73072, USA., Wu L; Institute for Environmental Genomics and Department of Microbiology & Plant Biology, University of Oklahoma, Norman, OK, 73072, USA., Zhou J; Institute for Environmental Genomics and Department of Microbiology & Plant Biology, University of Oklahoma, Norman, OK, 73072, USA., Hillesland KL; Biological Sciences, University of Washington Bothell, Bothell, WA, 98011, USA. hilleskl@uw.edu., Stahl DA; Civil and Environmental Engineering, University of Washington, Seattle, WA, 98195, USA. dastahl@uw.edu., Baliga NS; Institute for Systems Biology, Seattle, WA, 98109, USA. nitin.baliga@isbscience.org.

المصدر: The ISME journal [ISME J] 2021 Aug; Vol. 15 (8), pp. 2233-2247. Date of Electronic Publication: 2021 Feb 21.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

مواضيع طبية MeSH: Epistasis, Genetic* , Symbiosis*, Methanococcus/metabolism ; Mutation ; Sulfates/metabolism

المؤلفون: Hillesland KL; Biological Sciences Division, School of STEM, University of Washington Bothell, Bothell, Washington.

المصدر: Annals of the New York Academy of Sciences [Ann N Y Acad Sci] 2018 Jun; Vol. 1422 (1), pp. 88-103. Date of Electronic Publication: 2017 Nov 30.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Review

بيانات الدورية: Publisher: New York Academy of Sciences Country of Publication: United States NLM ID: 7506858 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1749-6632 (Electronic) Linking ISSN: 00778923 NLM ISO Abbreviation: Ann N Y Acad Sci

مواضيع طبية MeSH: Biological Evolution* , Symbiosis*, Microbiota ; Selection, Genetic

المؤلفون: Zhou A; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Lau R; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Baran R; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Ma J; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., von Netzer F; Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA., Shi W; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Gorman-Lewis D; Department of Earth and Space Sciences, University of Washington, Seattle, Washington, USA., Kempher ML; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., He Z; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Qin Y; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Shi Z; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Zane GM; Departments of Biochemistry and Molecular Microbiology and Immunology, University of Missouri-Columbia, Columbia, Missouri, USA., Wu L; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA., Bowen BP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Northen TR; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Hillesland KL; School of Science, Technology, Engineering and Mathematics, University of Washington Bothell, Bothell, Washington, USA., Stahl DA; Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA., Wall JD; Departments of Biochemistry and Molecular Microbiology and Immunology, University of Missouri-Columbia, Columbia, Missouri, USA., Arkin AP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.; Department of Bioengineering, University of California Berkeley, Berkeley, California, USA., Zhou J; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA jzhou@ou.edu.; Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.

المصدر: MBio [mBio] 2017 Nov 14; Vol. 8 (6). Date of Electronic Publication: 2017 Nov 14.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE

مواضيع طبية MeSH: Adaptation, Biological* , Osmotic Pressure* , Salt Tolerance*, Desulfovibrio vulgaris/*genetics , Desulfovibrio vulgaris/*physiology , Sulfates/*metabolism, Biological Evolution ; Biological Factors/analysis ; DNA Mutational Analysis ; Gene Expression Profiling ; Genotype ; Metabolomics ; Oxidation-Reduction

المؤلفون: Turkarslan S; Institute for Systems Biology, Seattle, WA, USA., Raman AV; Institute for Systems Biology, Seattle, WA, USA., Thompson AW; Institute for Systems Biology, Seattle, WA, USA., Arens CE; Institute for Systems Biology, Seattle, WA, USA., Gillespie MA; Institute for Systems Biology, Seattle, WA, USA., von Netzer F; Civil and Environmental Engineering, University of Washington, Seattle, WA, USA., Hillesland KL; Biological Sciences, University of Washington Bothell, Bothell, WA, USA., Stolyar S; Institute for Systems Biology, Seattle, WA, USA., López García de Lomana A; Institute for Systems Biology, Seattle, WA, USA., Reiss DJ; Institute for Systems Biology, Seattle, WA, USA., Gorman-Lewis D; Earth and Space Sciences, University of Washington, Seattle, WA, USA., Zane GM; Department of Biochemistry, University of Missouri, Columbia, MO, USA., Ranish JA; Institute for Systems Biology, Seattle, WA, USA., Wall JD; Department of Biochemistry, University of Missouri, Columbia, MO, USA., Stahl DA; Civil and Environmental Engineering, University of Washington, Seattle, WA, USA., Baliga NS; Institute for Systems Biology, Seattle, WA, USA nbaliga@systemsbiology.org.

المصدر: Molecular systems biology [Mol Syst Biol] 2017 Mar 20; Vol. 13 (3), pp. 919. Date of Electronic Publication: 2017 Mar 20.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: EMBO Press Country of Publication: England NLM ID: 101235389 Publication Model: Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

مواضيع طبية MeSH: Desulfovibrio vulgaris/*growth & development , Methanococcus/*growth & development , Systems Biology/*methods, Desulfovibrio vulgaris/genetics ; Directed Molecular Evolution ; Gene Expression Profiling ; Methanococcus/genetics ; Oxidation-Reduction ; Phenotype ; Proteomics ; Sequence Analysis, RNA ; Single-Cell Analysis ; Sulfates/metabolism

المؤلفون: Zhou A; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA., Hillesland KL; Biological Sciences, University of Washington Bothell, Bothell, WA, USA., He Z; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA., Schackwitz W; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Tu Q; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA., Zane GM; Departments of Biochemistry and Molecular Microbiology and Immunology, University of Missouri-Columbia, Columbia, MO, USA., Ma Q; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.; Key Laboratory of Industrial Ecology and Environmental Engineering (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian, China., Qu Y; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.; Key Laboratory of Industrial Ecology and Environmental Engineering (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian, China., Stahl DA; Civil and Environmental Engineering, University of Washington, Seattle, WA, USA., Wall JD; Departments of Biochemistry and Molecular Microbiology and Immunology, University of Missouri-Columbia, Columbia, MO, USA., Hazen TC; Department of Civil and Environmental Engineering, The University of Tennessee, Knoxville, TN, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA., Fields MW; Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA., Arkin AP; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zhou J; Institute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.; Earth Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.

المصدر: The ISME journal [ISME J] 2015 Nov; Vol. 9 (11), pp. 2360-72. Date of Electronic Publication: 2015 Apr 07.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 101301086 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1751-7370 (Electronic) Linking ISSN: 17517362 NLM ISO Abbreviation: ISME J Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Mutation* , Polymorphism, Genetic*, Adaptation, Physiological/*genetics , Desulfovibrio vulgaris/*genetics, Biodegradation, Environmental ; Biomass ; DNA Mutational Analysis ; Desulfovibrio vulgaris/metabolism ; Gene Frequency ; Genotype ; Metals, Heavy/chemistry ; Mutagenesis, Site-Directed ; Phenotype ; Salinity ; Salt Tolerance/genetics ; Sodium Chloride/chemistry ; Sulfur/chemistry

المؤلفون: Hillesland KL; Biological Sciences, University of Washington Bothell, Bothell, WA 98011; hilleskl@uw.edu., Lim S; Biological Sciences, University of Washington Bothell, Bothell, WA 98011;, Flowers JJ; Civil and Environmental Engineering, and., Turkarslan S; Institute for Systems Biology, Seattle, WA 98109-5234;, Pinel N; Civil and Environmental Engineering, and Institute for Systems Biology, Seattle, WA 98109-5234;, Zane GM; Department of Biochemistry, University of Missouri, Columbia, MO 65211;, Elliott N; Civil and Environmental Engineering, and., Qin Y; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019;, Wu L; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019;, Baliga NS; Institute for Systems Biology, Seattle, WA 98109-5234; Departments of Biology and Microbiology, Molecular and Cellular Biology Program, University of Washington Seattle, Seattle, WA 98195; Lawrence Berkeley National Laboratory, Berkeley, CA 94720; and., Zhou J; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019; Earth Science Division, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China., Wall JD; Department of Biochemistry, University of Missouri, Columbia, MO 65211;, Stahl DA; Civil and Environmental Engineering, and.

المصدر: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2014 Oct 14; Vol. 111 (41), pp. 14822-7. Date of Electronic Publication: 2014 Sep 29.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

مواضيع طبية MeSH: Directed Molecular Evolution*, Desulfovibrio vulgaris/*genetics , Methanococcus/*genetics, Coculture Techniques ; Mutation/genetics ; Oxidation-Reduction ; Phenotype ; Sulfates/metabolism ; Symbiosis

المؤلفون: Rajeev L; Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA. lrajeev@lbl.gov, Hillesland KL, Zane GM, Zhou A, Joachimiak MP, He Z, Zhou J, Arkin AP, Wall JD, Stahl DA

المصدر: Journal of bacteriology [J Bacteriol] 2012 Nov; Vol. 194 (21), pp. 5783-93. Date of Electronic Publication: 2012 Aug 17.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 2985120R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5530 (Electronic) Linking ISSN: 00219193 NLM ISO Abbreviation: J Bacteriol Subsets: MEDLINE

مواضيع طبية MeSH: Gene Deletion* , Gene Expression Profiling* , Gene Expression Regulation, Bacterial*, Bacterial Proteins/*genetics , Carbon Monoxide/*metabolism , Desulfovibrio vulgaris/*genetics , Transcription Factors/*genetics, Aldehyde Oxidoreductases/metabolism ; Desulfovibrio vulgaris/growth & development ; Desulfovibrio vulgaris/metabolism ; Lactates/metabolism ; Multienzyme Complexes/metabolism ; Pyruvic Acid/metabolism ; Sulfates/metabolism

المؤلفون: Momeni B; Division of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA., Chen CC, Hillesland KL, Waite A, Shou W

المصدر: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2011 Apr; Vol. 68 (8), pp. 1353-68. Date of Electronic Publication: 2011 Mar 23.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review

بيانات الدورية: Publisher: Springer Country of Publication: Switzerland NLM ID: 9705402 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1420-9071 (Electronic) Linking ISSN: 1420682X NLM ISO Abbreviation: Cell Mol Life Sci Subsets: MEDLINE

مواضيع طبية MeSH: Biological Evolution* , Ecology* , Models, Theoretical* , Symbiosis*, Ecosystem