المؤلفون: Martinez K; Department of Biochemistry & Molecular Medicine, The George Washington University School of Medicine and Health Sciences, 2300 I St. NW, Washington, DC 20052, United States., Agirre J; York Structural Biology Laboratory, Department of Chemistry, University of York, Wentworth Way, York YO10 5DD, United Kingdom., Akune Y; The Glycosciences Laboratory, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, United Kingdom., Aoki-Kinoshita KF; Glycan and Life Systems Integration Center (GaLSIC), Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan., Arighi C; Department of Computer and Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, United States., Axelsen KB; Swiss-Prot Group, Swiss Institute of Bioinformatics (SIB), CMU, 1 rue Michel Servet, Geneva 4 1211, Switzerland., Bolton E; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, United States., Bordeleau E; Michael Smith Laboratories, The University of British Columbia, 2185 East Mall, Vancouver, British Columbia V6T 1Z4, Canada., Edwards NJ; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University, 2115 Wisconsin Ave NW, Washington, DC 20007, United States., Fadda E; Department of Chemistry and Hamilton Institute, Maynooth University, Kilcock Road, Maynooth, Co. Kildare W23 AH3Y, Ireland., Feizi T; The Glycosciences Laboratory, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, United Kingdom., Hayes C; Proteome Informatics Group, Swiss Institute of Bioinformatics (SIB), route de Drize 7, Geneva CH-1227, Switzerland., Ives CM; Department of Chemistry and Hamilton Institute, Maynooth University, Kilcock Road, Maynooth, Co. Kildare W23 AH3Y, Ireland., Joshi HJ; Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, Copenhagen DK-2200, Denmark., Krishna Prasad K; ELI Beamlines Facility, The Extreme Light Infrastructure ERIC, Za Radnicí 835, Dolní Břežany 25241, Czech Republic., Kossida S; IMGT, The International ImMunoGeneTics Information System, National Center for Scientific Research (CNRS), Institute of Human Genetics (IGH), University of Montpellier (UM), 141 rue de la Cardonille, Montpellier 34 090, France., Lisacek F; Proteome Informatics Group, Swiss Institute of Bioinformatics (SIB), route de Drize 7, Geneva CH-1227, Switzerland., Liu Y; The Glycosciences Laboratory, Imperial College London, Hammersmith Campus, Du Cane Road, London W12 0NN, United Kingdom., Lütteke T; Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Gießen, Frankfurter Str. 100, Gießen 35392, Germany., Ma J; Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, 3900 Reservior Road NW, Washington, DC 20007, United States., Malik A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Martin M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Mehta AY; Department of Surgery, Beth Israel Deaconess Medical Center, National Center for Functional Glycomics, Harvard Medical School, 330 Brookline Avenue, Boston, MA 02215, United States., Neelamegham S; Departments of Chemical & Biological Engineering, Biomedical Engineering and Medicine, University at Buffalo, State University of New York, 906 Furnas Hall, Buffalo, NY 14260, United States., Panneerselvam K; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom., Ranzinger R; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602, United States., Ricard-Blum S; Institute of Molecular and Supramolecular Chemistry and Biochemistry (ICBMS), UMR 5246, University Lyon 1, CNRS, 43 Boulevard du 11 novembre 1918, Villeurbanne cedex F-69622, France., Sanou G; IMGT, The International ImMunoGeneTics Information System, National Center for Scientific Research (CNRS), Institute of Human Genetics (IGH), University of Montpellier (UM), 141 rue de la Cardonille, Montpellier 34 090, France., Shanker V; Department of Computer and Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, United States., Thomas PD; Department of Population and Public Health Sciences, University of Southern California, 2001 N Soto Street, Los Angeles, CA 90032, United States., Tiemeyer M; Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Rd, Athens, GA 30602, United States., Urban J; Department of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 7 B, Gothenburg 41390, Sweden., Vita R; Immune Epitope Database and Analysis Project, La Jolla Institute for Allergy & Immunology, 9420 Athena Circle, La Jolla, CA 92037, United States., Vora J; Department of Biochemistry & Molecular Medicine, The George Washington University School of Medicine and Health Sciences, 2300 I St. NW, Washington, DC 20052, United States., Yamamoto Y; Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, 178-4-4 Wakashiba, Kashiwa, Chiba 277-0871, Japan., Mazumder R; Department of Biochemistry & Molecular Medicine, The George Washington University School of Medicine and Health Sciences, 2300 I St. NW, Washington, DC 20052, United States.

المصدر: Database : the journal of biological databases and curation [Database (Oxford)] 2024 Aug 13; Vol. 2024.

نوع المنشور: Congress

بيانات الدورية: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

مواضيع طبية MeSH: Polysaccharides*/metabolism , Data Curation*/methods, Humans ; Glycosylation ; Italy ; Biocuration

المؤلفون: Ives CM; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom., Şahin AT; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom; School of Medicine, University of St Andrews, St Andrews, United Kingdom., Thomson NJ; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom., Zachariae U; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom; Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee, Dundee, United Kingdom. Electronic address: u.zachariae@dundee.ac.uk.

المصدر: Biophysical journal [Biophys J] 2024 Jul 30. Date of Electronic Publication: 2024 Jul 30.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 0370626 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1542-0086 (Electronic) Linking ISSN: 00063495 NLM ISO Abbreviation: Biophys J Subsets: MEDLINE

المؤلفون: Urban J; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden., Jin C; Proteomics Core Facility at Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden., Thomsson KA; Proteomics Core Facility at Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden., Karlsson NG; Section of Pharmacy, Department of Life Sciences and Health, Faculty of Health Sciences, Oslo Metropolitan University, Oslo, Norway., Ives CM; Department of Chemistry and Hamilton Institute, Maynooth University, Maynooth, Ireland., Fadda E; School of Biological Sciences, University of Southampton, Southampton, UK., Bojar D; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden. daniel.bojar@gu.se.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden. daniel.bojar@gu.se.

المصدر: Nature methods [Nat Methods] 2024 Jul; Vol. 21 (7), pp. 1206-1215. Date of Electronic Publication: 2024 Jul 01.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: Deep Learning* , Tandem Mass Spectrometry*/methods , Polysaccharides*/chemistry , Polysaccharides*/analysis, Glycomics/methods ; Humans ; Chromatography, Liquid/methods ; Software ; Workflow ; Neural Networks, Computer

المؤلفون: Ives CM; Department of Chemistry, Maynooth University, Maynooth, Ireland., Nguyen L; Department of Chemistry, University of Alberta, Edmonton, Canada., Fogarty CA; Department of Chemistry, Maynooth University, Maynooth, Ireland., Harbison AM; Department of Chemistry, Maynooth University, Maynooth, Ireland., Durocher Y; Human Health Therapeutics Research Centre, Life Sciences Division, National Research Council Canada, Québec, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Québec, Canada., Klassen J; Department of Chemistry, University of Alberta, Edmonton, Canada., Fadda E; School of Biological Sciences, University of Southampton, Southampton, United Kingdom.

المصدر: ELife [Elife] 2024 Jun 12; Vol. 13. Date of Electronic Publication: 2024 Jun 12.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

مواضيع طبية MeSH: Spike Glycoprotein, Coronavirus*/metabolism , Spike Glycoprotein, Coronavirus*/chemistry , Spike Glycoprotein, Coronavirus*/genetics , SARS-CoV-2*/metabolism , SARS-CoV-2*/chemistry , SARS-CoV-2*/genetics , Molecular Dynamics Simulation* , Protein Binding*, Glycosylation ; Humans ; COVID-19/virology ; COVID-19/metabolism ; Polysaccharides/metabolism ; Polysaccharides/chemistry ; Protein Domains ; Binding Sites ; Protein Conformation ; Mutation

SCR Organism: SARS-CoV-2 variants

المؤلفون: Utgés JS; Division of Computational Biology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK., MacGowan SA; Division of Computational Biology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK., Ives CM; Division of Computational Biology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK.; Department of Chemistry and Hamilton Institute, Maynooth University, Maynooth, Ireland., Barton GJ; Division of Computational Biology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK. gjbarton@dundee.ac.uk.

المصدر: Communications biology [Commun Biol] 2024 Mar 13; Vol. 7 (1), pp. 320. Date of Electronic Publication: 2024 Mar 13.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

مواضيع طبية MeSH: Proteins*/metabolism , Drug Discovery*/methods, Humans ; Ligands ; Binding Sites

المؤلفون: Ives CM; Computational Biology, School of Life Sciences, University of Dundee , Dundee, UK., Thomson NJ; Computational Biology, School of Life Sciences, University of Dundee , Dundee, UK., Zachariae U; Computational Biology, School of Life Sciences, University of Dundee , Dundee, UK.; Biochemistry and Drug Discovery, School of Life Sciences, University of Dundee , Dundee, UK.

المصدر: The Journal of general physiology [J Gen Physiol] 2023 May 01; Vol. 155 (5). Date of Electronic Publication: 2023 Mar 21.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Rockefeller University Press Country of Publication: United States NLM ID: 2985110R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1540-7748 (Electronic) Linking ISSN: 00221295 NLM ISO Abbreviation: J Gen Physiol Subsets: MEDLINE

مواضيع طبية MeSH: Calcium*/metabolism , Transient Receptor Potential Channels*/metabolism, TRPV Cation Channels/metabolism ; Cations/metabolism ; Molecular Dynamics Simulation ; Sodium/metabolism

المؤلفون: Williamson G, Tamburrino G, Bizior A, Boeckstaens M, Dias Mirandela G, Bage MG, Pisliakov A, Ives CM, Terras E, Hoskisson PA, Marini AM, Zachariae U, Javelle A

المصدر: ELife [Elife] 2022 Jan 27; Vol. 11. Date of Electronic Publication: 2022 Jan 27.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Bartsch A; Institute of Organic and Biomolecular Chemistry, University of Göttingen, Tammannstraße 2, 37077 Göttingen, Germany., Ives CM; Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK., Kattner C; ZIK HALOmem, Membrane Protein Biochemistry, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes Straße 3, 06120 Halle (Saale), Germany., Pein F; Institute for Mathematical Stochastics, University of Göttingen, Goldschmidtstraße 7, 37077 Göttingen, Germany., Diehn M; Institute for Mathematical Stochastics, University of Göttingen, Goldschmidtstraße 7, 37077 Göttingen, Germany., Tanabe M; Institute of Materials Structure Science, Structural Biology Research Center, KEK/High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan., Munk A; Institute for Mathematical Stochastics, University of Göttingen, Goldschmidtstraße 7, 37077 Göttingen, Germany., Zachariae U; Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK; Physics, School of Science and Engineering, University of Dundee, Nethergate, Dundee DD1 4NH, UK. Electronic address: u.zachariae@dundee.ac.uk., Steinem C; Institute of Organic and Biomolecular Chemistry, University of Göttingen, Tammannstraße 2, 37077 Göttingen, Germany; Max Planck Institute for Dynamics and Self-Organization, Am Fassberg 17, 37077 Göttingen, Germany. Electronic address: claudia.steinem@chemie.uni-goettingen.de., Llabrés S; Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK. Electronic address: salome.llabres@ub.edu.

المصدر: Biochimica et biophysica acta. Biomembranes [Biochim Biophys Acta Biomembr] 2021 Jun 01; Vol. 1863 (6), pp. 183601. Date of Electronic Publication: 2021 Mar 03.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101731713 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2642 (Electronic) Linking ISSN: 00052736 NLM ISO Abbreviation: Biochim Biophys Acta Biomembr Subsets: MEDLINE

مواضيع طبية MeSH: Bacterial Proteins/*chemistry , Neisseria meningitidis/*metabolism , Porins/*chemistry, Ampicillin/chemistry ; Ampicillin/metabolism ; Anti-Bacterial Agents/chemistry ; Anti-Bacterial Agents/metabolism ; Anti-Bacterial Agents/pharmacology ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Binding Sites ; Crystallography, X-Ray ; Drug Resistance, Bacterial/drug effects ; Liposomes/chemistry ; Liposomes/metabolism ; Molecular Dynamics Simulation ; Mutagenesis, Site-Directed ; Permeability/drug effects ; Porins/genetics ; Porins/metabolism ; Protein Binding ; Protein Structure, Tertiary ; Recombinant Proteins/biosynthesis ; Recombinant Proteins/chemistry ; Recombinant Proteins/isolation & purification

المؤلفون: Baker BR; School of Chemistry and Chemical Engineering, Queen's University Belfast, David Keir Building, Stranmillis Road, Belfast, BT9 5AG, UK., Ives CM; School of Medicine and School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160, Pearse Street, Dublin 2, D02 R590, Ireland; Division of Computational Biology, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK., Bray A; School of Medicine and School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160, Pearse Street, Dublin 2, D02 R590, Ireland., Caffrey M; School of Medicine and School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, 152-160, Pearse Street, Dublin 2, D02 R590, Ireland. Electronic address: martin.caffrey@tcd.ie., Cochrane SA; School of Chemistry and Chemical Engineering, Queen's University Belfast, David Keir Building, Stranmillis Road, Belfast, BT9 5AG, UK. Electronic address: s.cochrane@qub.ac.uk.

المصدر: European journal of medicinal chemistry [Eur J Med Chem] 2021 Jan 15; Vol. 210, pp. 113062. Date of Electronic Publication: 2020 Dec 02.

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Editions Scientifiques Elsevier Country of Publication: France NLM ID: 0420510 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1768-3254 (Electronic) Linking ISSN: 02235234 NLM ISO Abbreviation: Eur J Med Chem Subsets: MEDLINE

مواضيع طبية MeSH: Anti-Bacterial Agents/*pharmacology , Enzyme Inhibitors/*pharmacology , Gram-Positive Bacteria/*drug effects , Phosphotransferases (Alcohol Group Acceptor)/*metabolism, Anti-Bacterial Agents/chemistry ; Enzyme Inhibitors/chemistry ; Gram-Positive Bacteria/enzymology ; Microbial Sensitivity Tests ; Molecular Structure ; Phosphotransferases (Alcohol Group Acceptor)/biosynthesis

المؤلفون: Williamson G; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom., Tamburrino G; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.; Physics, School of Science and Engineering, University of Dundee, Dundee, United Kingdom., Bizior A; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom., Boeckstaens M; Biology of Membrane Transport Laboratory, Department of Molecular Biology, Université Libre de Bruxelles, Gosselies, Belgium., Dias Mirandela G; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom., Bage MG; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.; Physics, School of Science and Engineering, University of Dundee, Dundee, United Kingdom., Pisliakov A; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.; Physics, School of Science and Engineering, University of Dundee, Dundee, United Kingdom., Ives CM; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom., Terras E; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom., Hoskisson PA; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom., Marini AM; Biology of Membrane Transport Laboratory, Department of Molecular Biology, Université Libre de Bruxelles, Gosselies, Belgium., Zachariae U; Computational Biology, School of Life Sciences, University of Dundee, Dundee, United Kingdom.; Physics, School of Science and Engineering, University of Dundee, Dundee, United Kingdom., Javelle A; Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom.

المصدر: ELife [Elife] 2020 Jul 14; Vol. 9. Date of Electronic Publication: 2020 Jul 14.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

مواضيع طبية MeSH: Ion Transport*, Ammonia/*metabolism , Ammonium Compounds/*metabolism , Escherichia coli/*metabolism , Nitrosomonas europaea/*metabolism