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1A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
المؤلفون: Michael Quintin, Ilija Dukovski, Alvaro Sanchez, Kirill S. Korolev, Daniel Segrè, Alan R. Pacheco, Djordje Bajić, Snorre Sulheim, David B. Bernstein, Jean C. C. Vila, William R. Harcombe, Jeremy M. Chacón, William J. Riehl
المصدر: Nature Protocols. 16:5030-5082
مصطلحات موضوعية: 0303 health sciences, Computer science, Systems biology, Computation, Python (programming language), General Biochemistry, Genetics and Molecular Biology, Flux balance analysis, 03 medical and health sciences, 0302 clinical medicine, 13. Climate action, Ecosystem, Biochemical engineering, Evolutionary dynamics, MATLAB, Protocol (object-oriented programming), computer, 030217 neurology & neurosurgery, 030304 developmental biology, computer.programming_language
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المؤلفون: Yang-Yu Liu, Jean C. C. Vila, Alvaro Sanchez
المصدر: ISME J
مصطلحات موضوعية: Abiotic component, 0303 health sciences, education.field_of_study, 030306 microbiology, Ecology, Microbiota, Population Dynamics, Population, Replicate, Biology, Microbiology, Article, 03 medical and health sciences, Taxonomic composition, Taxon, Habitat, Baseline (configuration management), education, Set (psychology), Ecology, Evolution, Behavior and Systematics, 030304 developmental biology
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المؤلفون: Xinwen Zhu, Stefan Golfier, Richard Li, Chang-Yu Chang, Julia Borden, Alvaro Sanchez, María Rebolleda-Gómez, Madeline Bender, Paul Gerald L. Sanchez, Sylvie Estrela, Madeleine C. Mankowski, Juan Diaz-Colunga, Molly Bassette, Jean C. C. Vila, Rachel Waymack
المصدر: Nature ecology & evolution, vol 5, iss 7
Nature ecology & evolutionمصطلحات موضوعية: 0303 health sciences, Ecology, Computer science, Small number, Selection strategy, Artificial ecosystem, Directed evolution, Article, 03 medical and health sciences, 0302 clinical medicine, Ecosystem, Biochemical engineering, Generic health relevance, Set (psychology), 030217 neurology & neurosurgery, Ecology, Evolution, Behavior and Systematics, Selection (genetic algorithm), 030304 developmental biology
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f31e0c95d96da3d34c14132261198f7
https://escholarship.org/uc/item/03j1z1qv -
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المؤلفون: María Rebolleda-Gómez, Chang-Yu Chang, Alicia Sánchez-Gorostiaga, Djordje Bajić, Sylvie Estrela, Alvaro Sanchez, Joshua E. Goldford, Nanxi Lu, Jean C. C. Vila
المصدر: Cell Syst
Cell systems, vol 13, iss 1مصطلحات موضوعية: education.field_of_study, Histology, Microbiota, Population Dynamics, Population, Reproducibility of Results, dynamical systems theory, Cell Biology, Replicate, Biology, Article, Pathology and Forensic Medicine, microbial metabolism, alternative states, Microbial population biology, Evolutionary biology, Attractor, microbial community assembly, Biochemistry and Cell Biology, Convergence (relationship), Microbiome, education, Multistability
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::beb4c74783f219b62c0ee089c15b0931
https://doi.org/10.1016/j.cels.2021.09.011 -
7A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
المؤلفون: Ilija, Dukovski, Djordje, Bajić, Jeremy M, Chacón, Michael, Quintin, Jean C C, Vila, Snorre, Sulheim, Alan R, Pacheco, David B, Bernstein, William J, Riehl, Kirill S, Korolev, Alvaro, Sanchez, William R, Harcombe, Daniel, Segrè
المصدر: Nature protocols. 16(11)
مصطلحات موضوعية: Microbiota, Systems Biology, Models, Biological
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المصدر: eLife
eLife, Vol 10 (2021)مصطلحات موضوعية: 0301 basic medicine, nutrient interactions, QH301-705.5, Ecology (disciplines), Science, Biology, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, Taxonomic composition, 0302 clinical medicine, Then test, Nutrient, Dominance (ecology), Microbiome, Biology (General), Organic Chemicals, Additive model, General Immunology and Microbiology, Bacteria, Ecology, Null model, General Neuroscience, Microbiota, resource specialization, General Medicine, Nutrients, Replicate, environmental complexity, 030104 developmental biology, Community composition, Microbial population biology, Environmental complexity, consumer-resource models, Medicine, Microbial community assembly, Other, Sugars, Acids, 030217 neurology & neurosurgery, Research Article, Computational and Systems Biology
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::43d0a851de4e2aa583491f67d2a423b0
https://doi.org/10.1101/2020.08.06.239897 -
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المؤلفون: Sylvie Estrela, Juan Diaz-Colunga, Jean C. C. Vila, Chang-Yu Chang, María Rebolleda-Gómez, Alvaro Sanchez
المصدر: Annu Rev Biophys
Annual review of biophysics, vol 50, iss 1مصطلحات موضوعية: 0106 biological sciences, Genotype, Computer science, Biophysics, microbial communities, Bioengineering, artificial ecosystem selection, structure–function landscape, bepress|Life Sciences|Ecology and Evolutionary Biology, 010603 evolutionary biology, 01 natural sciences, Biochemistry, Article, Medicinal and Biomolecular Chemistry, 03 medical and health sciences, collective community functions, bepress|Life Sciences, Structural Biology, Genetics, Animals, Humans, directed evolution, bepress|Life Sciences|Ecology and Evolutionary Biology|Population Biology, Selection (genetic algorithm), 030304 developmental biology, 0303 health sciences, Microbiota, Human Genome, Genetic variants, Cell Biology, Top-down and bottom-up design, Chemical Engineering, Directed evolution, Biological Evolution, Data science, Phenotype, Biochemistry and Cell Biology
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::582547753e3a383d0b58e8980cf548e0
https://doi.org/10.32942/osf.io/gsz7j -
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المؤلفون: Julia Borden, Chang-Yu Chang, Sylvie Estrela, Juan Diaz-Colunga, Jean C. C. Vila, Xinwen Zhu, Madeleine C. Mankowski, Richard Li, Paul Gerald L. Sanchez, Rachel Waymack, Molly Bassette, María Rebolleda-Gómez, Madeline Bender, Alvaro Sanchez, Stefan Golfier
مصطلحات موضوعية: Range (mathematics), Computer science, media_common.quotation_subject, Asexual reproduction, Ecosystem, Top-down and bottom-up design, Biochemical engineering, Function (engineering), Directed evolution, Set (psychology), Selection (genetic algorithm), media_common
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::af6e4885a17d0dd8fa812f7f91b9c7bd
https://doi.org/10.1101/2020.07.24.214775