المؤلفون: Dillon, MR, Bolyen, E, Adamov, A, Belk, A, Borsom, E, Burcham, Z, Debelius, JW, Deel, H, Emmons, A, Estaki, M, Herman, C, Keefe, CR, Morton, JT, Oliveira, RRM, Sanchez, A, Simard, A, Vazquez-Baeza, Y, Ziemski, M, Miwa, HE, Kerere, TA, Coote, C, Bonneau, R, Knight, R, Oliveira, G, Gopalasingam, P, Kaehler, BD, Cope, EK, Metcalf, JL, Robeson, MS, Bokulich, NA, Caporaso, JG

المصدر: PLoS computational biology. 17(6):e1009056

مصطلحات موضوعية: Medicin och hälsovetenskap

URL الوصول: http://kipublications.ki.se/Default.aspx?queryparsed=id:147013308

المؤلفون: Bokulich, NA, Kaehler, BD, Rideout, JR, Dillon, M, Bolyen, E, Knight, R, Huttley, GA, Caporaso, JG

المصدر: Bokulich, NA; Kaehler, BD; Rideout, JR; Dillon, M; Bolyen, E; Knight, R; et al.(2018). Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2 ' s q2-feature-classifier plugin. MICROBIOME, 6. doi: 10.1186/s40168-018-0470-z. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/7mm0453b

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od_______325::e310b36eb252d24e51ecdf43b2267c55
http://www.escholarship.org/uc/item/7mm0453b

المؤلفون: Robeson MS 2nd; University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, Arkansas, United States of America., O'Rourke DR; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America., Kaehler BD; School of Science, University of New South Wales, Canberra, Australia., Ziemski M; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Switzerland., Dillon MR; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America., Foster JT; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, United States of America., Bokulich NA; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Switzerland.

المصدر: PLoS computational biology [PLoS Comput Biol] 2021 Nov 08; Vol. 17 (11), pp. e1009581. Date of Electronic Publication: 2021 Nov 08 (Print Publication: 2021).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Database Management Systems* , Software*, Databases, Genetic/*statistics & numerical data, Animals ; Classification ; Computational Biology ; DNA Barcoding, Taxonomic ; Databases, Nucleic Acid ; Genomics ; Humans ; Metagenome ; Metagenomics ; Microbiota/genetics ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis

المؤلفون: Ziemski M; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zurich, Switzerland., Wisanwanichthan T; School of Science, University of New South Wales, Canberra, ACT, Australia., Bokulich NA; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zürich, Zurich, Switzerland., Kaehler BD; School of Science, University of New South Wales, Canberra, ACT, Australia.

المصدر: Frontiers in microbiology [Front Microbiol] 2021 Jun 18; Vol. 12, pp. 644487. Date of Electronic Publication: 2021 Jun 18 (Print Publication: 2021).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

المؤلفون: Bokulich NA; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zurich, Switzerland., Ziemski M; Laboratory of Food Systems Biotechnology, Institute of Food, Nutrition, and Health, ETH Zurich, Switzerland., Robeson MS 2nd; University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, AR, USA., Kaehler BD; School of Science, University of New South Wales, Canberra, Australia.

المصدر: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2020 Dec 03; Vol. 18, pp. 4048-4062. Date of Electronic Publication: 2020 Dec 03 (Print Publication: 2020).

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

المؤلفون: Kaehler BD; Research School of Biology, Australian National University, Canberra, Australia. b.kaehler@adfa.edu.au.; School of Science, University of New South Wales, Canberra, Australia. b.kaehler@adfa.edu.au., Bokulich NA; Center for Applied Microbiome Science, The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. nicholas.bokulich@nau.edu.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. nicholas.bokulich@nau.edu., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Center for Applied Microbiome Science, The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. gregcaporaso@gmail.com.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. gregcaporaso@gmail.com., Huttley GA; Research School of Biology, Australian National University, Canberra, Australia. gavin.huttley@anu.edu.au.

المصدر: Nature communications [Nat Commun] 2019 Oct 11; Vol. 10 (1), pp. 4643. Date of Electronic Publication: 2019 Oct 11.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Phylogeny*, Microbiota/*genetics, Bacteria/genetics ; Classification/methods ; Computational Biology ; Metagenomics/methods ; Population Density ; Software

المؤلفون: Bolyen E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Rideout JR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Dillon MR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Bokulich NA; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Abnet CC; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Al-Ghalith GA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Alexander H; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Alm EJ; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA., Arumugam M; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Asnicar F; Centre for Integrative Biology, University of Trento, Trento, Italy., Bai Y; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China., Bisanz JE; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA., Bittinger K; Division of Gastroenterology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Hepatology, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Brejnrod A; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Brislawn CJ; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brown CT; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Callahan BJ; Department of Population Health & Pathobiology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Caraballo-Rodríguez AM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Chase J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Cope EK; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA., Da Silva R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Diener C; Institute for Systems Biology, Seattle, WA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Douglas GM; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada., Durall DM; Irving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, Canada., Duvallet C; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Edwardson CF; A. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USA., Ernst M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark., Estaki M; Department of Biology, University of British Columbia Okanagan, Okanagan, British Columbia, Canada., Fouquier J; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Gauglitz JM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Gibbons SM; Institute for Systems Biology, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA., Gibson DL; Irving K. Barber School of Arts and Sciences, Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada.; Department of Medicine, University of British Columbia, Kelowna, British Columbia, Canada., Gonzalez A; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Gorlick K; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Guo J; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA., Hillmann B; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Holmes S; Statistics Department, Stanford University, Palo Alto, CA, USA., Holste H; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Huttenhower C; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Huttley GA; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia., Janssen S; Department of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, Germany., Jarmusch AK; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Jiang L; Department of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USA., Kaehler BD; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.; School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia., Kang KB; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea., Keefe CR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Keim P; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Kelley ST; Department of Biology, San Diego State University, San Diego, CA, USA., Knights D; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.; Biotechnology Institute, University of Minnesota, Saint Paul, MN, USA., Koester I; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Kosciolek T; Department of Pediatrics, University of California San Diego, La Jolla, California, USA., Kreps J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Langille MGI; Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada., Lee J; Science Education, Howard Hughes Medical Institute, Ashburn, VA, USA., Ley R; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA., Liu YX; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China., Loftfield E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Lozupone C; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Maher M; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Martin BD; Department of Statistics, University of Washington, Seattle, WA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McIver LJ; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Metcalf JL; Department of Animal Science, Colorado State University, Fort Collins, CO, USA., Morgan SC; Irving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, Canada., Morton JT; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Naimey AT; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Navas-Molina JA; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA.; Google LLC, Mountain View, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Orchanian SB; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Pearson T; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Peoples SL; School of Information Studies, Syracuse University, Syracuse, NY, USA.; School of STEM, University of Washington Bothell, Bothell, WA, USA., Petras D; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Preuss ML; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Pruesse E; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Rasmussen LB; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Rivers A; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA., Robeson MS 2nd; College of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA., Rosenthal P; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Segata N; Centre for Integrative Biology, University of Trento, Trento, Italy., Shaffer M; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Shiffer A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Sinha R; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Song SJ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Spear JR; Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Thompson LR; Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, La Jolla, CA, USA., Torres PJ; Department of Biology, San Diego State University, San Diego, CA, USA., Trinh P; Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USA., Tripathi A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Turnbaugh PJ; Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA., Ul-Hasan S; Quantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USA., van der Hooft JJJ; Bioinformatics Group, Wageningen University, Wageningen, the Netherlands., Vargas F; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Vázquez-Baeza Y; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Vogtmann E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., von Hippel M; Department of Mathematics, University of Arizona, Tucson, AZ, USA., Walters W; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany., Wan Y; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Wang M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Warren J; National Laboratory Service, Environment Agency, Starcross, UK., Weber KC; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA.; College of Agriculture and Life Sciences, University of Florida, Gainesville, FL, USA., Williamson CHD; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Willis AD; Department of Biostatistics, University of Washington, Seattle, WA, USA., Xu ZZ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Zaneveld JR; School of STEM, Division of Biological Sciences, University of Washington Bothell, Bothell, WA, USA., Zhang Y; Merck & Co. Inc., Kenilworth, NJ, USA., Zhu Q; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.

المصدر: Nature biotechnology [Nat Biotechnol] 2019 Sep; Vol. 37 (9), pp. 1091.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Bolyen E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Rideout JR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Dillon MR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Bokulich NA; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Abnet CC; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Al-Ghalith GA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Alexander H; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Alm EJ; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA., Arumugam M; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Asnicar F; Centre for Integrative Biology, University of Trento, Trento, Italy., Bai Y; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China., Bisanz JE; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA., Bittinger K; Division of Gastroenterology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Hepatology, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Brejnrod A; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Brislawn CJ; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brown CT; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Callahan BJ; Department of Population Health & Pathobiology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Caraballo-Rodríguez AM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Chase J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Cope EK; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA., Da Silva R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Diener C; Institute for Systems Biology, Seattle, WA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Douglas GM; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada., Durall DM; Irving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, Canada., Duvallet C; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Edwardson CF; A. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USA., Ernst M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark., Estaki M; Department of Biology, University of British Columbia Okanagan, Okanagan, British Columbia, Canada., Fouquier J; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Gauglitz JM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Gibbons SM; Institute for Systems Biology, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA., Gibson DL; Irving K. Barber School of Arts and Sciences, Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada.; Department of Medicine, University of British Columbia, Kelowna, British Columbia, Canada., Gonzalez A; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Gorlick K; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Guo J; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA., Hillmann B; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Holmes S; Statistics Department, Stanford University, Palo Alto, CA, USA., Holste H; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Huttenhower C; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Huttley GA; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia., Janssen S; Department of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, Germany., Jarmusch AK; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Jiang L; Department of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USA., Kaehler BD; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.; School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia., Kang KB; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea., Keefe CR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Keim P; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Kelley ST; Department of Biology, San Diego State University, San Diego, CA, USA., Knights D; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.; Biotechnology Institute, University of Minnesota, Saint Paul, MN, USA., Koester I; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Kosciolek T; Department of Pediatrics, University of California San Diego, La Jolla, California, USA., Kreps J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Langille MGI; Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada., Lee J; Science Education, Howard Hughes Medical Institute, Ashburn, VA, USA., Ley R; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA., Liu YX; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China., Loftfield E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Lozupone C; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Maher M; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Martin BD; Department of Statistics, University of Washington, Seattle, WA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McIver LJ; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Metcalf JL; Department of Animal Science, Colorado State University, Fort Collins, CO, USA., Morgan SC; Irving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, Canada., Morton JT; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Naimey AT; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Navas-Molina JA; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA.; Google LLC, Mountain View, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Orchanian SB; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Pearson T; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Peoples SL; School of Information Studies, Syracuse University, Syracuse, NY, USA.; School of STEM, University of Washington Bothell, Bothell, WA, USA., Petras D; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Preuss ML; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Pruesse E; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Rasmussen LB; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Rivers A; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA., Robeson MS 2nd; College of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA., Rosenthal P; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Segata N; Centre for Integrative Biology, University of Trento, Trento, Italy., Shaffer M; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Shiffer A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Sinha R; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Song SJ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Spear JR; Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Thompson LR; Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, La Jolla, CA, USA., Torres PJ; Department of Biology, San Diego State University, San Diego, CA, USA., Trinh P; Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USA., Tripathi A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Turnbaugh PJ; Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA., Ul-Hasan S; Quantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USA., van der Hooft JJJ; Bioinformatics Group, Wageningen University, Wageningen, the Netherlands., Vargas F; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Vázquez-Baeza Y; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Vogtmann E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., von Hippel M; Department of Mathematics, University of Arizona, Tucson, AZ, USA., Walters W; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany., Wan Y; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Wang M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Warren J; National Laboratory Service, Environment Agency, Starcross, UK., Weber KC; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA.; College of Agriculture and Life Sciences, University of Florida, Gainesville, FL, USA., Williamson CHD; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Willis AD; Department of Biostatistics, University of Washington, Seattle, WA, USA., Xu ZZ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Zaneveld JR; School of STEM, Division of Biological Sciences, University of Washington Bothell, Bothell, WA, USA., Zhang Y; Merck & Co. Inc., Kenilworth, NJ, USA., Zhu Q; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.

المصدر: Nature biotechnology [Nat Biotechnol] 2019 Aug; Vol. 37 (8), pp. 852-857.

نوع المنشور: Letter; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology* , Data Science* , Microbiota* , Software*, Databases, Factual ; Humans

المؤلفون: Sutherland TD; CSIRO (The Commonwealth Scientific and Industrial Research Organisation), Health and Biosecurity, Canberra, Australian Capital Territory, Australia., Sriskantha A; CSIRO (The Commonwealth Scientific and Industrial Research Organisation), Health and Biosecurity, Canberra, Australian Capital Territory, Australia., Rapson TD; CSIRO (The Commonwealth Scientific and Industrial Research Organisation), Health and Biosecurity, Canberra, Australian Capital Territory, Australia., Kaehler BD; Research School of Biology, Australian National University, Australian Capital Territory, Australia., Huttley GA; Research School of Biology, Australian National University, Australian Capital Territory, Australia.

المصدر: PloS one [PLoS One] 2018 Sep 21; Vol. 13 (9), pp. e0203948. Date of Electronic Publication: 2018 Sep 21 (Print Publication: 2018).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

مواضيع طبية MeSH: Antimicrobial Cationic Peptides/*genetics , Antimicrobial Cationic Peptides/*physiology , Insect Proteins/*genetics , Insect Proteins/*physiology , Silk/*genetics , Silk/*physiology, Amino Acid Sequence ; Animals ; Antimicrobial Cationic Peptides/chemistry ; Ants/genetics ; Ants/physiology ; Bees/genetics ; Bees/physiology ; Evolution, Molecular ; Insect Proteins/chemistry ; Phylogeny ; Silk/chemistry ; Social Behavior ; Wasps/genetics ; Wasps/physiology

المؤلفون: Bokulich NA; The Pathogen and Microbiome Institute, Northern Arizona University, PO Box 4073, Flagstaff, AZ, 86011-4073, USA. nicholas.bokulich@nau.edu., Kaehler BD; Research School of Biology, Australian National University, 46 Sullivans Creek Road, Acton ACT, 2601, Australia. benjamin.kaehler@anu.edu.au., Rideout JR; The Pathogen and Microbiome Institute, Northern Arizona University, PO Box 4073, Flagstaff, AZ, 86011-4073, USA., Dillon M; The Pathogen and Microbiome Institute, Northern Arizona University, PO Box 4073, Flagstaff, AZ, 86011-4073, USA., Bolyen E; The Pathogen and Microbiome Institute, Northern Arizona University, PO Box 4073, Flagstaff, AZ, 86011-4073, USA., Knight R; Departments of Pediatrics and Computer Science and Engineering, and Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Huttley GA; Research School of Biology, Australian National University, 46 Sullivans Creek Road, Acton ACT, 2601, Australia. gavin.huttley@anu.edu.au., Gregory Caporaso J; The Pathogen and Microbiome Institute, Northern Arizona University, PO Box 4073, Flagstaff, AZ, 86011-4073, USA. gregcaporaso@gmail.com.; Department of Biological Sciences, Northern Arizona University, 1298 S Knoles Drive, Building 56, 3rd Floor, Flagstaff, AZ, USA. gregcaporaso@gmail.com.

المصدر: Microbiome [Microbiome] 2018 May 17; Vol. 6 (1), pp. 90. Date of Electronic Publication: 2018 May 17.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 101615147 Publication Model: Electronic Cited Medium: Internet ISSN: 2049-2618 (Electronic) Linking ISSN: 20492618 NLM ISO Abbreviation: Microbiome Subsets: MEDLINE

مواضيع طبية MeSH: Computer Simulation*, Bacteria/*genetics , DNA, Intergenic/*genetics , Fungi/*genetics , Microbiota/*genetics , RNA, Ribosomal, 16S/*genetics , Sequence Alignment/*methods, Algorithms ; Base Sequence/genetics ; Machine Learning ; Software