المؤلفون: Piotr Gawron, David Hoksza, Janet Piñero, Maria Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Groues, Venkata P. Satagopam, Reinhard Schneider, Joaquin Dopazo, Laura I. Furlong, Marek Ostaszewski

المصدر: Frontiers in Bioinformatics, Vol 3 (2023)

مصطلحات موضوعية: pathway diagrams, systems biomedicine, rare diseases (RD), disease maps, gene-disease association, Computer applications to medicine. Medical informatics, R858-859.7

وصف الملف: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbinf.2023.1101505/full; https://doaj.org/toc/2673-7647

URL الوصول: https://doaj.org/article/2a8ecff469be48179eb1a3911ed85df0

المؤلفون: Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, D A B Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff‐Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community

المصدر: Molecular Systems Biology, Vol 17, Iss 12, Pp n/a-n/a (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/5d30269056c148bf87fd8eb20e9f3e1c

المؤلفون: Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta‐Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frishman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E Ackerman, Jason E Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, Devasahayam Arokia Balaya Rex, Denise Slenter, Marvin Martens, Nhung Pham, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic‐Milacic, Andrea Senff-Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean‐Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W Overall, Dieter Maier, Angela Bauch, Benjamin M Gyori, John A Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban‐Medina, Maria Peña‐Chilet, Kinza Rian, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Stephane Ballereau, Aurélien Dugourd, Aurélien Naldi, Vincent Noël, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C Freeman, Franck Augé, Jacques S Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L Willighagen, Alexander R Pico, Chris T Evelo, Marc E Gillespie, Lincoln D Stein, Henning Hermjakob, Peter D'Eustachio, Julio Saez‐Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID‐19 Disease Map Community

المصدر: Molecular Systems Biology, Vol 17, Iss 10, Pp n/a-n/a (2021)

مصطلحات موضوعية: computable knowledge repository, large‐scale biocuration, omics data analysis, open access community effort, systems biomedicine, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/07d2352966634fc58ef9a394d1092d67

المؤلفون: Anne Richelle, Benjamin P. Kellman, Alexander T. Wenzel, Austin W.T. Chiang, Tyler Reagan, Jahir M. Gutierrez, Chintan Joshi, Shangzhong Li, Joanne K. Liu, Helen Masson, Jooyong Lee, Zerong Li, Laurent Heirendt, Christophe Trefois, Edwin F. Juarez, Tyler Bath, David Borland, Jill P. Mesirov, Kimberly Robasky, Nathan E. Lewis

المصدر: Cell Reports: Methods, Vol 1, Iss 3, Pp 100040- (2021)

مصطلحات موضوعية: metabolic function, omic data, systems biology, functional analysis, genome-scale metabolic network, transcriptomic, Biotechnology, TP248.13-248.65, Biochemistry, QD415-436, Science

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667237521000850; https://doaj.org/toc/2667-2375

URL الوصول: https://doaj.org/article/c23044d9a67944aeafbcd03821f78050

المؤلفون: Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele

المصدر: Microbiome, Vol 7, Iss 1, Pp 1-18 (2019)

مصطلحات موضوعية: Gut microbiome, Bile acids, Host-microbe interactions, Metabolism, Genome-scale reconstruction, Constraint-based modeling, Microbial ecology, QR100-130

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-019-0689-3; https://doaj.org/toc/2049-2618

URL الوصول: https://doaj.org/article/dcf614623d0b44eeaf0e6e3d45e6b03b

المؤلفون: Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike K Aurich, Ronan MT Fleming

المصدر: Molecular Systems Biology, Vol 16, Iss 5, Pp n/a-n/a (2020)

مصطلحات موضوعية: flux balance analysis, human metabolism, metabolic modeling, microbiome, Biology (General), QH301-705.5, Medicine (General), R5-920

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1744-4292

URL الوصول: https://doaj.org/article/a552db6e045340a5a96cd800271a386b

المؤلفون: Jooyong Lee, Jill P. Mesirov, Chintan Joshi, Christophe Trefois, Nathan E. Lewis, Alexander T. Wenzel, Zerong Li, Edwin F. Juarez, David Borland, Tyler Bath, Austin W. T. Chiang, Laurent Heirendt, Tyler Reagan, Jahir M. Gutierrez, Joanne K. Liu, Benjamin P. Kellman, Anne Richelle, Shangzhong Li, Helen O. Masson, Kimberly Robasky

المصدر: Cell Reports: Methods, Vol 1, Iss 3, Pp 100040-(2021)
Cell reports methods

مصطلحات موضوعية: Cultural Studies, History, Literature and Literary Theory, Computer science, Biotechnologie [F06] [Sciences du vivant], Systems biology, Science, Computational biology, QD415-436, Biochemistry, Article, functional analysis, Omics data, Mammalian cell, Biotechnology [F06] [Life sciences], genome-scale metabolic network, metabolic function, Biological studies, Metabolic function, Gene sets, omic data, systems biology, transcriptomic, Omics, TP248.13-248.65, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36b194eb4ec8b147cd8d68c3a97d3163
http://www.sciencedirect.com/science/article/pii/S2667237521000850

المؤلفون: Dezso Modos, Julia Scheel, Ralf Stephan, Piotr Gawron, Kristina Hanspers, Jean-Marie Ravel, Alexander Mazein, Corinna Montrone, Alberto Valdeolivas, Marek Ostaszewski, Susan L. Coort, Hiroaki Kitano, Tom C. Freeman, Vera Ortseifen, Vanessa Nakonecnij, M Orlic-Milacic, Jan Hasenauer, Veronica Shamovsky, Venkata P. Satagopam, Goar Frishman, M. Vazquez, D A B Rex, Miguel Ponce de Leon, Sylvain Soliman, Luana Licata, Ebru Kocakaya, Kinza Rian, Yusuke Hiki, Marton Olbei, Martina Kutmon, Bijay Jassal, Akira Funahashi, Lisa Matthews, Xiaoming Hu, Marcio Luis Acencio, Zsolt Bocskei, Robin Haw, Joaquín Dopazo, Agatha Treveil, Andrea Senff-Ribeiro, Tomáš Helikar, Chris T. Evelo, John A. Bachman, Julio Saez-Rodriguez, Takahiro G. Yamada, Emmanuel Barillot, Anton Yuryev, Bertrand De Meulder, Matti Hoch, Guanming Wu, Daniela Börnigen, Rudi Balling, Karen Rothfels, Pablo Porras, Hanna Borlinghaus, Andreas Dräger, Aurélien Naldi, Marta Iannuccelli, Leonard Schmiester, Dieter Maier, Jason E. Shoemaker, Valentin Grouès, Jakob Vanhoefer, Marius Rameil, Sara Sadat Aghamiri, Tobias Czauderna, Inna Kuperstein, Nhung Pham, Reinhard Schneider, Marina Esteban-Medina, Carole Goble, Benjamin M. Gyori, Emily E. Ackerman, Anita de Waard, Bhanwar Lal Puniya, Olaf Wolkenhauer, Alfonso Valencia, Julia Somers, Ewa Smula, Gisela Fobo, Robert Phair, Chris Sander, Laurent Heirendt, Carlos Vega, Jeremy Teuton, Emek Demir, Alina Renz, Tamas Korcsmaros, Vidisha Singh, Anastasia P. Nesterova, Andreas Ruepp, Lars M. T. Eijssen, Thawfeek M. Varusai, Aurelien Dugourd, Silvia Marchesi, Cristoffer Sevilla, Falk Schreiber, Barbara Brauner, Noriko Hiroi, Augustin Luna, Muying Wang, Shailendra K. Gupta, Egon Willighagen, Charles Auffray, Denise Slenter, Kristie L. Oxford, Franck Augé, Friederike Ehrhart, Muhammad Naveez, Stuart Owen, Arnau Montagud, Liam Fergusson, Enrico Glaab, Martin Golebiewski, Laurence Calzone, Alexander R. Pico, Dénes Türei, Marvin Martens, Henning Hermjakob, Rupert W. Overall, Jeremy Zucker, Özgün Babur, Gokce Yagmur Summak, Lincoln Stein, Anders Riutta, Anna Niarakis, Aurelio Orta-Resendiz, Francesca Sacco, Maria Peña-Chilet, Marta Conti, Jacques S. Beckmann, Angela Bauch

المساهمون: University of Luxembourg [Luxembourg]

مصطلحات موضوعية: 0303 health sciences, Coronavirus disease 2019 (COVID-19), Computer science, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Interoperability, Disease, Data science, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Domain (software engineering), 03 medical and health sciences, 0302 clinical medicine, 030220 oncology & carcinogenesis, Relevance (information retrieval), 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::072fd0730fda5cdbe9087ff60a56abe9
https://hal.archives-ouvertes.fr/hal-03151664/document

المؤلفون: Markus Ollert, Oliver Hunewald, Reinhard Schneider, Laurent Heirendt, Venkata P. Satagopam, Vasco Verissimo, Jiří Vondrášek, Christophe Trefois, Miroslav Kratochvíl

المساهمون: ELIXIR CZ LM2018131 (MEYS) [sponsor], FNR AFR-RIKEN bilateral program (TregBar 2015/11228353) [sponsor], FNR PRIDE Doctoral Training Unit program (PRIDE/11012546/NEXTIMMUNE) [sponsor], Institute of Organic Chemistry and Biochemistry of the CAS (RVO: 61388963) [sponsor], ELIXIR Staff Exchange programme 2020 [sponsor], University of Luxembourg: High Performance Computing - ULHPC [research center], Luxembourg Centre for Systems Biomedicine (LCSB): Bioinformatics Core (R. Schneider Group) [research center]

المصدر: GigaScience
Kratochvíl, M, Hunewald, O, Heirendt, L, Verissimo, V, Vondrášek, J, Satagopam, V P, Schneider, R, Trefois, C & Ollert, M 2020, ' GigaSOM.jl : High-performance clustering and visualization of huge cytometry datasets ', GigaScience, vol. 9, no. 11, giaa127 . https://doi.org/10.1093/gigascience/giaa127

مصطلحات موضوعية: Self-organizing map, single-cell cytometry, Speedup, Computer science, AcademicSubjects/SCI02254, Health Informatics, self-organizing maps, Multidisciplinary, general & others [F99] [Life sciences], computer.software_genre, Multidisciplinaire, généralités & autres [C99] [Ingénierie, informatique & technologie], Multidisciplinaire, généralités & autres [F99] [Sciences du vivant], 03 medical and health sciences, Mice, 0302 clinical medicine, Software, Technical Note, Animals, Cluster Analysis, Cluster analysis, 030304 developmental biology, dimensionality reduction, 0303 health sciences, business.industry, Dimensionality reduction, Multidisciplinary, general & others [C99] [Engineering, computing & technology], Process (computing), Julia, high-performance computing, Supercomputer, Computer Science Applications, Visualization, Data point, Scalability, Key (cryptography), AcademicSubjects/SCI00960, Programming Languages, Data mining, business, computer, Algorithms, 030215 immunology, clustering

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f98af6d38058edc1931c3a9bc2e8f936
https://pubmed.ncbi.nlm.nih.gov/33205814

المؤلفون: Ronan M. T. Fleming, Maike K. Aurich, Almut Heinken, Ines Thiele, Laurent Heirendt, Johannes Hertel, Swagatika Sahoo

المصدر: Molecular Systems Biology, Vol 16, Iss 5, Pp n/a-n/a (2020)
Molecular Systems Biology, 16(5), e8982. WILEY
Molecular Systems Biology

مصطلحات موضوعية: Male, Proteomics, Medicine (General), QH301-705.5, flux balance analysis, microbiome, Metabolic network, Human metabolism, Computational biology, Biology, Article, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, R5-920, 0302 clinical medicine, Metabolomics, metabolic modeling, Humans, Computer Simulation, Microbiome, Biology (General), 030304 developmental biology, 0303 health sciences, Computational model, General Immunology and Microbiology, Systems Biology, Applied Mathematics, Computational Biology, Articles, Gut microbiome, Gastrointestinal Microbiome, Flux balance analysis, Metabolism, Gene Expression Regulation, Computational Theory and Mathematics, Organ Specificity, human metabolism, Metabolome, Female, Energy Metabolism, General Agricultural and Biological Sciences, Whole body, Algorithms, Biomarkers, Metabolic Networks and Pathways, 030217 neurology & neurosurgery, Information Systems

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c16363c42b2c5ae7ada249c7e089c6d2
https://doi.org/10.15252/msb.20198982