المؤلفون: de Araújo HL; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo , São Paulo, Brazil., Picinato BA; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo , Ribeirão Preto, Brazil., Lorenzetti APR; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo , Ribeirão Preto, Brazil., Muthunayake NS; Department of Biological Sciences, Wayne State University , Detroit, Michigan, USA., Rathnayaka-Mudiyanselage IW; Department of Biological Sciences, Wayne State University , Detroit, Michigan, USA., Dos Santos NM; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo , São Paulo, Brazil., Schrader J; Department of Biological Sciences, Wayne State University , Detroit, Michigan, USA., Koide T; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo , Ribeirão Preto, Brazil., Marques MV; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo , São Paulo, Brazil.

المصدر: Microbiology spectrum [Microbiol Spectr] 2023 Dec 12; Vol. 11 (6), pp. e0193423. Date of Electronic Publication: 2023 Oct 18.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

مواضيع طبية MeSH: Caulobacter*/genetics , Caulobacter*/metabolism, Temperature ; RNA/metabolism ; DEAD-box RNA Helicases/genetics ; DEAD-box RNA Helicases/metabolism ; RNA Processing, Post-Transcriptional

المؤلفون: Kusebauch U; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Lorenzetti APR; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Campbell DS; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Pan M; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Shteynberg D; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Kapil C; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., Midha MK; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA., López García de Lomana A; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA.; Center for Systems Biology, University of Iceland, Reykjavik, Iceland., Baliga NS; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA.; Departments of Biology and Microbiology, University of Washington, Seattle, WA, USA.; Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA.; Lawrence Berkeley National Lab, Berkeley, CA, USA., Moritz RL; Institute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA. rmoritz@systemsbiology.org.

المصدر: Scientific data [Sci Data] 2023 Oct 13; Vol. 10 (1), pp. 697. Date of Electronic Publication: 2023 Oct 13.

نوع المنشور: Dataset; Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

مواضيع طبية MeSH: Halobacterium salinarum*/metabolism , Proteome*/analysis, Peptides/analysis ; Proteomics/methods

المؤلفون: Lorenzetti APR; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil.; Institute for Systems Biology, Seattle, Washington, USA., Kusebauch U; Institute for Systems Biology, Seattle, Washington, USA., Zaramela LS; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil., Wu WJ; Institute for Systems Biology, Seattle, Washington, USA., de Almeida JPP; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil., Turkarslan S; Institute for Systems Biology, Seattle, Washington, USA., L G de Lomana A; Institute for Systems Biology, Seattle, Washington, USA., Gomes-Filho JV; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil., Vêncio RZN; Department of Computation and Mathematics, Faculty of Philosophy, Sciences and Letters at Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil., Moritz RL; Institute for Systems Biology, Seattle, Washington, USA., Koide T; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil., Baliga NS; Institute for Systems Biology, Seattle, Washington, USA.; Department of Biology, University of Washington, Seattle, Washington, USA.; Department of Microbiology, University of Washington, Seattle, Washington, USA.; Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, USA.; Lawrence Berkeley National Lab, Berkeley, California, USA.

المصدر: MSystems [mSystems] 2023 Apr 27; Vol. 8 (2), pp. e0081622. Date of Electronic Publication: 2023 Mar 13.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2379-5077 (Electronic) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: MEDLINE

مواضيع طبية MeSH: Archaea*/genetics , Transcriptome*/genetics, Humans ; Genome ; RNA, Antisense/genetics ; Ribonucleases/genetics

المؤلفون: Lima LDP; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil., de Santana ES; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil., Lorenzetti APR; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil., Lourenço RF; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil., Ceseti LM; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil., Riva L; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil., Bayer-Santos E; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil., Boechat AL; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Baldini RL; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Farah CS; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil., Koide T; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil., Alvarez-Martinez CE; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil.

المصدر: Molecular microbiology [Mol Microbiol] 2022 Nov; Vol. 118 (5), pp. 552-569. Date of Electronic Publication: 2022 Oct 17.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Blackwell Scientific Publications Country of Publication: England NLM ID: 8712028 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2958 (Electronic) Linking ISSN: 0950382X NLM ISO Abbreviation: Mol Microbiol Subsets: MEDLINE

مواضيع طبية MeSH: Dictyostelium*/genetics , Dictyostelium*/metabolism , Xanthomonas*/genetics , Xanthomonas*/metabolism , Type VI Secretion Systems*/metabolism, Sigma Factor/genetics ; Sigma Factor/metabolism ; AraC Transcription Factor/genetics ; Gene Expression Regulation, Bacterial/genetics ; Eukaryotic Cells ; Eukaryota/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism

SCR Organism: Xanthomonas citri

المؤلفون: Lima LDP; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Pereira JB; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Flores AJF; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Lorenzetti APR; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil., Boechat AL; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brazil., Pereda MC; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brazil., Gualtieri S; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., do Prado DF; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Rocha D; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Ceseti LM; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil., Baldini RL; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brazil., Farah CS; Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brazil., Koide T; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil., Benedetti CE; Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo, Brazil., Alvarez-Martinez CE; Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, São Paulo, Brazil.

المصدر: Journal of bacteriology [J Bacteriol] 2022 May 17; Vol. 204 (5), pp. e0062421. Date of Electronic Publication: 2022 Apr 21.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 2985120R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5530 (Electronic) Linking ISSN: 00219193 NLM ISO Abbreviation: J Bacteriol Subsets: MEDLINE

مواضيع طبية MeSH: Citrus*/microbiology , Xanthomonas*/metabolism, Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Iron/metabolism ; Plant Diseases/microbiology ; Sigma Factor/genetics ; Sigma Factor/metabolism ; Soil ; Virulence/genetics

SCR Organism: Xanthomonas citri

المؤلفون: de Araújo HL; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil., Martins BP; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil., Vicente AM; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil., Lorenzetti APR; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil., Koide T; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil., Marques MV; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil.

المصدر: Microbiology spectrum [Microbiol Spectr] 2021 Sep 03; Vol. 9 (1), pp. e0071021. Date of Electronic Publication: 2021 Aug 25.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

مواضيع طبية MeSH: Gene Expression Regulation, Bacterial*, Bacterial Proteins/*metabolism , Caulobacter crescentus/*metabolism , Iron/*metabolism , Repressor Proteins/*metabolism, Bacterial Proteins/genetics ; Caulobacter crescentus/chemistry ; Caulobacter crescentus/genetics ; Cold Temperature ; Ion Transport ; RNA, Bacterial/genetics ; RNA, Bacterial/metabolism ; RNA, Untranslated/genetics ; RNA, Untranslated/metabolism ; Regulon ; Repressor Proteins/genetics

المؤلفون: Ibrahim AGAE; Department of Computation and Mathematics, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-900, Brazil., Vêncio RZN; Department of Computation and Mathematics, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-900, Brazil., Lorenzetti APR; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, Universidade de São Paulo, Ribeirão Preto 14040-900, Brazil., Koide T; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, Universidade de São Paulo, Ribeirão Preto 14040-900, Brazil.

المصدر: Genes [Genes (Basel)] 2021 Jun 30; Vol. 12 (7). Date of Electronic Publication: 2021 Jun 30.

نوع المنشور: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

مواضيع طبية MeSH: Gene Expression Regulation, Archaeal* , Genome, Archaeal* , Transcription Initiation Site* , Transcriptome*, Archaeal Proteins/*genetics , Halobacterium salinarum/*genetics , Haloferax volcanii/*genetics, Archaeal Proteins/metabolism ; Halobacterium salinarum/metabolism ; Haloferax volcanii/metabolism ; RNA-Seq ; Ribosomes

المؤلفون: López García de Lomana A; Institute for Systems Biology, Seattle, Washington, USA., Kusebauch U; Institute for Systems Biology, Seattle, Washington, USA., Raman AV; Institute for Systems Biology, Seattle, Washington, USA., Pan M; Institute for Systems Biology, Seattle, Washington, USA., Turkarslan S; Institute for Systems Biology, Seattle, Washington, USA., Lorenzetti APR; Institute for Systems Biology, Seattle, Washington, USA.; Microbial Systems Biology Lab, Universidade de São Paulo, Ribeirão Preto, Brazil., Moritz RL; Institute for Systems Biology, Seattle, Washington, USA., Baliga NS; Institute for Systems Biology, Seattle, Washington, USA nbaliga@systemsbiology.org.; Department of Biology, University of Washington, Seattle, Washington, USA.; Department of Microbiology, University of Washington, Seattle, Washington, USA.; Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, USA.; Lawrence Berkeley National Lab, Berkeley, California, USA.

المصدر: MSystems [mSystems] 2020 Jul 28; Vol. 5 (4). Date of Electronic Publication: 2020 Jul 28.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101680636 Publication Model: Electronic Cited Medium: Print ISSN: 2379-5077 (Print) Linking ISSN: 23795077 NLM ISO Abbreviation: mSystems Subsets: PubMed not MEDLINE

المؤلفون: Silva LG; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: gomess.lari@gmail.com., Lorenzetti APR; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil. Electronic address: alan.lorenzetti@gmail.com., Ribeiro RA; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: rodolfo.alvarenga.ribeiro@usp.br., Alves IR; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: ingridreale10@gmail.com., Leaden L; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: leaden@usp.br., Galhardo RS; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: rgalhard@usp.br., Koide T; Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil. Electronic address: tkoide@fmrp.usp.br., Marques MV; Departamento de Microbiologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil. Electronic address: mvmarque@usp.br.

المصدر: Gene [Gene] 2019 Jun 05; Vol. 700, pp. 70-84. Date of Electronic Publication: 2019 Mar 14.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier/North-Holland Country of Publication: Netherlands NLM ID: 7706761 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0038 (Electronic) Linking ISSN: 03781119 NLM ISO Abbreviation: Gene Subsets: MEDLINE

مواضيع طبية MeSH: Caulobacter crescentus/*growth & development , Gene Expression Profiling/*methods , Hydrogen Peroxide/*adverse effects , Transcription Factors/*genetics, Bacterial Proteins/genetics ; Caulobacter crescentus/drug effects ; Caulobacter crescentus/genetics ; Gene Expression Regulation, Bacterial/drug effects ; Gene Expression Regulation, Developmental/drug effects ; Gene Regulatory Networks/drug effects ; Oxidative Stress ; Sequence Analysis, RNA/methods ; Stress, Physiological

المؤلفون: de Almeida JPP; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, São Paulo 14049-900, Brazil. jpereiradealmeida.mg32@gmail.com., Vêncio RZN; Department of Computation and Mathematics, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, University of São Paulo, São Paulo, Brazil. rvencio@usp.br., Lorenzetti APR; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, São Paulo 14049-900, Brazil. alan.lorenzetti@gmail.com., Caten FT; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, São Paulo 14049-900, Brazil. ftencaten@gmail.com., Gomes-Filho JV; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, São Paulo 14049-900, Brazil. rvencio@usp.br., Koide T; Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, São Paulo 14049-900, Brazil. tkoide@fmrp.usp.br.

المصدر: Genes [Genes (Basel)] 2019 Apr 05; Vol. 10 (4). Date of Electronic Publication: 2019 Apr 05.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Print ISSN: 2073-4425 (Print) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

مواضيع طبية MeSH: Gene Expression Profiling*, Halobacterium salinarum/*genetics , RNA, Antisense/*genetics , Transcriptome/*genetics, Gene Expression Regulation, Archaeal/genetics ; Genome, Archaeal/genetics ; RNA, Untranslated/genetics ; Ribosomes/genetics ; Transcription Initiation Site