المؤلفون: Luc Blassel, Paul Medvedev, Rayan Chikhi

المصدر: iScience, Vol 25, Iss 11, Pp 105305- (2022)

مصطلحات موضوعية: Biological sciences, Molecular biology, Biological sciences research methodologies, Transcriptomics, Science

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004222015772; https://doaj.org/toc/2589-0042

URL الوصول: https://doaj.org/article/9f30d939a3c6423daf865a86dfb9d9d4

المؤلفون: Luc Blassel, Anna Tostevin, Christian Julian Villabona-Arenas, Martine Peeters, Stéphane Hué, Olivier Gascuel, UK HIV Drug Resistance Database

المصدر: PLoS Computational Biology, Vol 17, Iss 8, p e1008873 (2021)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

URL الوصول: https://doaj.org/article/f24dab1ce4724b9696dc6e25ea878cb0

المؤلفون: Katherine E. Atkins, Christian Julian Villabona-Arenas, Olivier Gascuel, Stéphane Hué, Anna Zhukova, Luc Blassel

المساهمون: Bioinformatique évolutive - Evolutionary Bioinformatics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Collège doctoral [Sorbonne universités], Sorbonne Université (SU), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, London School of Hygiene and Tropical Medicine (LSHTM), University of Edinburgh, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), This work was supported by: Horizon 2020 framework program (Award number 634650, VIROGENESIS project, OG recipient, LB master salary), Agence Nationale de la Recherche (Award number ANR-19-P3IA-0001, PIA3 programme, PRAIRIE project, OG recipient, LB PhD salary), European Research Council (ERC) Starting Grant (Number 757688, awarded to Katherine E. Atkins, KEA and CJVA)., ANR-19-P3IA-0001,PRAIRIE,PaRis Artificial Intelligence Research InstitutE(2019), European Project: 634650,H2020,H2020-PHC-2014-two-stage,VIROGENESIS(2015), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Collège Doctoral, Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE)

المصدر: Current Opinion in Virology
Current Opinion in Virology, Elsevier, 2021, 51, pp.56-64. ⟨10.1016/j.coviro.2021.09.009⟩
Current Opinion in Virology, 2021, 51, pp.56-64. ⟨10.1016/j.coviro.2021.09.009⟩
Blassel, L, Zhukova, A, Villabona-Arenas, C J, Atkins, K E, Hué, S & Gascuel, O 2021, ' Drug resistance mutations in HIV : new bioinformatics approaches and challenges ', Current Opinion in Virology, vol. 51, pp. 56-64 . https://doi.org/10.1016/j.coviro.2021.09.009

مصطلحات موضوعية: Human immunodeficiency virus (HIV), HIV Infections, Drug resistance, [SDV.BID]Life Sciences [q-bio]/Biodiversity, Biology, Bioinformatics, medicine.disease_cause, Deep sequencing, 03 medical and health sciences, 0302 clinical medicine, Data sequences, Virology, Drug Resistance, Viral, medicine, Humans, 030212 general & internal medicine, Hiv transmission, Phylogeny, 030304 developmental biology, 0303 health sciences, Transmission (medicine), Treatment options, Computational Biology, HIV, Virological failure, 3. Good health, Mutation

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::906fde77d52f1e1c1a45de5e9d8b9f5f
https://researchonline.lshtm.ac.uk/id/eprint/4664046/1/1-s2.0-S1879625721001073-main.pdf

المؤلفون: Martine Peeters, Luc Blassel, Olivier Gascuel, Christian Julian Villabona-Arenas, Stéphane Hué, Anna Tostevin

المصدر: PLoS Computational Biology, Vol 17, Iss 8, p e1008873 (2021)

مصطلحات موضوعية: Population level, QH301-705.5, Human immunodeficiency virus (HIV), Drug resistance, Biology, medicine.disease_cause, Machine learning, computer.software_genre, 03 medical and health sciences, 0302 clinical medicine, medicine, 030212 general & internal medicine, Biology (General), 030304 developmental biology, 0303 health sciences, Mutation, Reverse-transcriptase inhibitor, business.industry, Robustness (evolution), Reverse transcriptase, 3. Good health, Epistasis, Artificial intelligence, business, computer, medicine.drug

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27ea33532b307cc719c0361cde3aa5d7
https://doi.org/10.1101/2021.03.16.435621

المؤلفون: Luc Blassel, Frédéric Lemoine, Marie Morel, Olivier Gascuel, Jakub Voznica, Anna Zhukova

المصدر: Comptes rendus biologies.

مصطلحات موضوعية: 0106 biological sciences, 0301 basic medicine, Genetics, Infectivity, Mutation, Host (biology), Transmission (medicine), viruses, Virulence, General Medicine, Biology, medicine.disease_cause, 01 natural sciences, Genome, Virus, 3. Good health, 03 medical and health sciences, 030104 developmental biology, Pandemic, medicine, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::29545d5ff0008a924c288126c9aa15ea
https://pubmed.ncbi.nlm.nih.gov/33274614

المؤلفون: Olivier Gascuel, Luc Blassel, Frédéric Lemoine, Jakub Voznica

المساهمون: Bioinformatique évolutive - Evolutionary Bioinformatics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Ecole Doctorale Complexité du Vivant (ED515), Sorbonne Université (SU), Université de Paris (UP), LB PhD Grant: PRAIRIE (ANR-19-P3IA-0001), JV PhD Grant: École Normale Supérieure Paris-Saclay and ED Frontières de l'Innovation en Recherche et Education., Sincere thanks to Amandine Perrin and Fabien Mareuil (Institut Pasteur) for help, and the GISAID Team and all its Data Contributors for sharing their genome data., ANR-19-P3IA-0001,PRAIRIE,PaRis Artificial Intelligence Research InstitutE(2019), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Université Paris Cité (UPCité)

المصدر: Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2020, pp.btaa871. ⟨10.1093/bioinformatics/btaa871⟩
Bioinformatics, 2021, pp.btaa871. ⟨10.1093/bioinformatics/btaa871⟩

مصطلحات موضوعية: 0106 biological sciences, Statistics and Probability, AcademicSubjects/SCI01060, Computer science, Interface (Java), Computational biology, 01 natural sciences, Biochemistry, Genome, 03 medical and health sciences, Software, Humans, 1000 Genomes Project, Hidden Markov model, Indel, Pandemics, Molecular Biology, 030304 developmental biology, 0303 health sciences, Multiple sequence alignment, SARS-CoV-2, business.industry, [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], COVID-19, Computer Science Applications, Applications Note, Computational Mathematics, Computational Theory and Mathematics, Filter (video), [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], business, 010606 plant biology & botany

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35ba56aab7d4aac16e7f43edcd84b3a5
https://hal-pasteur.archives-ouvertes.fr/pasteur-02995703

المؤلفون: Olivier Gascuel, Frédéric Lemoine

المساهمون: Bioinformatique évolutive - Evolutionary Bioinformatics, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), PRAIRIE [ANR-19-P3IA-0001 to O.G.]. Funding for open access charge: Institute Pasteur., First, we thank the Gotree/Goalign users for their feedbacks, which allow us to add new functionnalities and improve existing ones. We also thank all the Evolutionary Bioinformatics lab: Anna Zhukova, Marie Morel, Luc Blassel and Jakub Voznica for testing and using Gotree/Goalign extensively., ANR-19-P3IA-0001,PRAIRIE,PaRis Artificial Intelligence Research InstitutE(2019), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE)

المصدر: NAR Genomics and Bioinformatics
NAR Genomics and Bioinformatics, Oxford University Press, 2021, 3 (3), pp.lqab075. ⟨10.1093/nargab/lqab075⟩
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab075. ⟨10.1093/nargab/lqab075⟩

مصطلحات موضوعية: 0106 biological sciences, AcademicSubjects/SCI01140, AcademicSubjects/SCI01060, Computer science, Application Notes, AcademicSubjects/SCI00030, Reuse, computer.software_genre, AcademicSubjects/SCI01180, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, 030304 developmental biology, 0303 health sciences, Multiple sequence alignment, Phylogenetic tree, Programming language, computer.file_format, Tree (data structure), Task (computing), Workflow, Scripting language, Executable, AcademicSubjects/SCI00980, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Corrigendum, computer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2aef1cdfd9bb36a98955c239f224725
https://hal-pasteur.archives-ouvertes.fr/pasteur-03427582/document