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المؤلفون: Rune Thomas Kidmose, Jonathan Juhl, Poul Nissen, Thomas Boesen, Jesper Lykkegaard Karlsen, Bjørn Panyella Pedersen

المصدر: IUCrJ, Vol 6, Iss 4, Pp 526-531 (2019)

مصطلحات موضوعية: molecular dynamics flexible fitting, MDFF, cryo-EM, crystallography, molecular dynamics, model-fitting, automation, web services, flexible fitting, Crystallography, QD901-999

وصف الملف: electronic resource

Relation: http://scripts.iucr.org/cgi-bin/paper?S2052252519007619; https://doaj.org/toc/2052-2525

URL الوصول: https://doaj.org/article/62db1750502545a0b799c66a35dc5325

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المؤلفون: Xiaojun Xu, Chunli Yan, Robert Wohlhueter, Ivaylo Ivanov

المصدر: Computational and Structural Biotechnology Journal, Vol 13, Iss C, Pp 492-503 (2015)

مصطلحات موضوعية: Integrative modeling, Hybrid modeling, Molecular dynamics flexible fitting (MDFF), Small angle X-ray scattering (SAXS), Electron microscopy (EM), DNA replication and repair, Biotechnology, TP248.13-248.65

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037015000409; https://doaj.org/toc/2001-0370

URL الوصول: https://doaj.org/article/6ea5faa4376344babe362959354ba743

المؤلفون: Poul Nissen, Jonathan Juhl, Rune T. Kidmose, Thomas Boesen, Bjørn Panyella Pedersen, Jesper Lykkegaard Karlsen

المصدر: IUCrJ, Vol 6, Iss 4, Pp 526-531 (2019)
IUCrJ
Kidmose, R T, Juhl, J, Nissen, P, Boesen, T, Karlsen, J L & Pedersen, B P 2019, ' Namdinator-Automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps ', IUCrJ, vol. 6, no. 4, pp. 526-531 . https://doi.org/10.1107/S2052252519007619

مصطلحات موضوعية: Scale (ratio), Computer science, Cryo-electron microscopy, molecular dynamics flexible fitting, computer.software_genre, 01 natural sciences, Biochemistry, flexible fitting, 03 medical and health sciences, Molecular dynamics, 0302 clinical medicine, 0103 physical sciences, MDFF, Atomic model, General Materials Science, crystallography, 030304 developmental biology, automation, 0303 health sciences, model-fitting, Crystallography, 010304 chemical physics, business.industry, General Chemistry, Condensed Matter Physics, Automation, Pipeline (software), Research Letters, molecular dynamics, web services, Structural biology, QD901-999, Outlier, cryo-EM, Web service, business, computer, Model building, 030217 neurology & neurosurgery

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49a8ef0a8b268b3a8927c1f515eb4670
http://scripts.iucr.org/cgi-bin/paper?S2052252519007619

المؤلفون: Baradaran, Masoumeh, Jalali, Amir, Naderi Soorki, Maryam, Jokar, Mahmoud, Galehdari, Hamid

المصدر: Iranian Journal of Pharmaceutical Research : IJPR

مصطلحات موضوعية: MDFF simulation, docking, Chloride channel toxin, Original Article, Steered Molecular Dynamics Simulations, Iranian Mesobuthus eupeus

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::342c468589d6e08df91f1f160cbbad2f
http://europepmc.org/articles/PMC6706747

المؤلفون: Baradaran, M., Amir Jalali, Naderi-Soorki, M., Jokar, M., Galehdari, H.

المصدر: Iranian Journal of Pharmaceutical Research : IJPR
Scopus-Elsevier

مصطلحات موضوعية: Chlorotoxin-like peptide, Molecular dynamics flexible fitting (MDFF), Mesobuthus eupeus, Original Article, Homology modeling, cDNA library, Transcriptome analysis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmc_dedup___::b55f35c0385bc9d48887872535af8831
http://europepmc.org/articles/PMC6269579

المؤلفون: Hariprasad Venugopal, Sarah C. Atkinson, Matthew J. Belousoff, Sheena McGowan, Nyssa Drinkwater, Natalie A. Borg, Tess R. Malcolm

المصدر: The Journal of Biological Chemistry

مصطلحات موضوعية: WT, wild type, Models, Molecular, Protein Conformation, alpha-Helical, 0301 basic medicine, Plasmodium, metalloprotease, Dimer, leucine aminopeptidase, Protozoan Proteins, Gene Expression, Random hexamer, Crystallography, X-Ray, Aminopeptidases, Biochemistry, Aminopeptidase, Substrate Specificity, chemistry.chemical_compound, Catalytic Domain, Magnesium, Cloning, Molecular, Dynamic equilibrium, biology, SAXS, small-angle X-ray scattering, regulation, Cobalt, Dipeptides, MM, metal-binding mutant, Recombinant Proteins, Enzyme structure, Zinc, Leu-Mec, L-Leucine-7-amido-4-methyl-coumarin, Cys-Gly, cysteine-glycinyl, Research Article, Protein Binding, Cations, Divalent, Stereochemistry, MDFF, Molecular dynamic flexible fitting, Plasmodium falciparum, oligomerization, 03 medical and health sciences, Tetramer, Escherichia coli, Protein Interaction Domains and Motifs, Molecular Biology, Manganese, AUC, analytical ultracentrifugation, 030102 biochemistry & molecular biology, SEC-MALS, size exclusion chromatography multi-angle light scattering, Cryoelectron Microscopy, Active site, Cell Biology, Exopeptidase, Kinetics, 030104 developmental biology, chemistry, Mutation, biology.protein, Protein Conformation, beta-Strand, Protein Multimerization, NCS, noncrystallographic symmetry, Plasmodium vivax, LAP, leucine aminopeptidase

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d502046e408696b428e9ed5010d0d4a
https://doi.org/10.1074/jbc.ra120.016313

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