-
1
المؤلفون: Anne Bergeron, Paul Guertin, Jean-Stéphane Varré, Samuel Blanquart, Amandine Perrin, Krister M. Swenson
المساهمون: Bioinformatics and Sequence Analysis (BONSAI), Centre National de la Recherche Scientifique (CNRS)-Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Université de Lille, Sciences et Technologies-Inria Lille - Nord Europe, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Laboratoire de combinatoire et d'informatique mathématique [Montréal] (LaCIM), Centre de Recherches Mathématiques [Montréal] (CRM), Université de Montréal (UdeM)-Université de Montréal (UdeM)-Université du Québec à Montréal = University of Québec in Montréal (UQAM), Collège André-Grasset [Montréal], Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Génomique évolutive des Microbes / Microbial Evolutionary Genomics, Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Institut de Biologie Computationnelle (IBC), Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), AB is partially supported by Canada NSERC Grant number 05729-2014, and by Équipes associées Inria-FRQNT Grant number 188128. This research is supported by the Inria Associate Team program.Inria associated team CG-ALCODE (2014-2016), Université de Lille, Sciences et Technologies-Inria Lille - Nord Europe, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
المصدر: BMC Genomics
BMC Genomics, BioMed Central, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩
BMC Genomics, Vol 17, Iss S10, Pp 157-164 (2016)
BMC Genomics, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩مصطلحات موضوعية: 0301 basic medicine, Eukaryotes, Proteomics, Genome, Transcriptome, MESH: RNA / metabolism, Mice, MESH: Proteins / chemistry, Protein Isoforms, MESH: Animals, Splicing orthologs, Genetics, MESH: Transcriptome, MESH: Alternative Splicing, MESH: Proteins / metabolism, Exons, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], RNA splicing, Transcriptome prediction, DNA microarray, MESH: RNA / chemistry, Algorithms, MESH: RNA / genetics, Biotechnology, MESH: Computational Biology, Gene isoform, lcsh:QH426-470, lcsh:Biotechnology, MESH: Protein Isoforms / genetics, Computational biology, Biology, MESH: Protein Isoforms / metabolism, 03 medical and health sciences, lcsh:TP248.13-248.65, MESH: Proteins / genetics, Animals, Humans, Gene, MESH: Mice, MESH: Protein Isoforms / chemistry, MESH: Humans, Alternative splicing, Computational Biology, Proteins, Alternative Splicing, lcsh:Genetics, 030104 developmental biology, MESH: Algorithms, RNA, MESH: Exons
-
2
المؤلفون: Yves Nominé, Sebastian Charbonnier, Patricia Cassonnet, Anne Forster, Julie Abdat, Marilyne Blémont, Nicolas Wolff, Kevin Ricquier, Renaud Vincentelli, Katja Luck, Juline Poirson, Marie-Laure Straub, Jérôme Reboul, Jolanta Polanowska, Jeremy Turchetto, Gilles Travé, Francois, Jean-Paul Borg, Yves Jacob, Murielle Masson
المساهمون: Architecture et fonction des macromolécules biologiques (AFMB), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), Biotechnologie et signalisation cellulaire (BSC), Université de Strasbourg (UNISTRA)-Institut de recherche de l'Ecole de biotechnologie de Strasbourg (IREBS)-Centre National de la Recherche Scientifique (CNRS), Centre de Recherche en Cancérologie de Marseille (CRCM), Aix Marseille Université (AMU)-Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Equipe labellisée Ligue contre le Cancer, Génétique Moléculaire des Virus à ARN - Molecular Genetics of RNA Viruses (GMV-ARN (UMR_3569 / U-Pasteur_2)), Institut Pasteur [Paris]-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), This work was supported by institutional support from CNRS, Université de Strasbourg, Infrastructures Biologie Santé et Agronomie (Ibisa) and grants from the Association pour la Recherche contre le Cancer (ARC) (no. 3171), Agence Nationale de la Recherche (ANR-MIME-2007 EPI-HPV-3D), US National Institutes of Health (NIH grant R01CA134737), Ligue contre le Cancer and Alsace contre le Cancer. K.L. was supported by grants of Région Alsace and ARC. J. Poirson was supported by a grant of the Ligue Régionale contre le Cancer. J.-P.B. is supported in part by grants from La Ligue Contre le Cancer, Institut paoli-Calmettes, Cancéropôle PACA and SIRIC (INCa-DGOS-Inserm 6038). J.-P.B. is supported as a scholar of Institut Universitaire de France, SIRIC 6038United States Department of Health & Human Services National Institutes of Health (NIH) - USA NIH National Cancer Institute (NCI) R01CA134737, We thank the CCSB (Harvard University) for kindly providing clones of the human ORFeome, and T. Rolland, M.A. Delsuc, D. Altschuh, B. Kieffer, A. Dejaegere and all members of the 'Oncoproteins' team for helpful discussions and advice., ANR-07-MIME-0009,EPI-HPV-3D,Vers la compréhension fonctionelle et structurale de l'interactome cellulaire des protéines précoces des Papilloma Virus Humains.(2007), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS), Wolff, Nicolas, Microbiologie, immunologie et maladies émergentes - Vers la compréhension fonctionelle et structurale de l'interactome cellulaire des protéines précoces des Papilloma Virus Humains. - - EPI-HPV-3D2007 - ANR-07-MIME-0009 - MIME - VALID, Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche de l'Ecole de biotechnologie de Strasbourg (IREBS), Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
المصدر: Nature Methods
Nature Methods, Nature Publishing Group, 2015, 12 (8), pp.787-793. ⟨10.1038/nmeth.3438⟩
Nature Methods, Nature Publishing Group, 2015, 12 (8), pp.787-U154. ⟨10.1038/NMETH.3438⟩
Nature Methods, 2015, 12 (8), pp.787-793. ⟨10.1038/nmeth.3438⟩
Nature methodsمصطلحات موضوعية: Proteome, Protein Conformation, MESH: PDZ Domains, MESH: DNA-Binding Proteins / chemistry, [SDV]Life Sciences [q-bio], Amino Acid Motifs, PDZ Domains, Ligands, Biochemistry, MESH: Amino Acid Motifs, Protein structure, MESH: Protein Conformation, Protein Interaction Mapping, MESH: Ligands, [SDV.BBM.BC] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM], ComputingMilieux_MISCELLANEOUS, MESH: Oncogene Proteins, Viral / chemistry, MESH: High-Throughput Screening Assays, 0303 health sciences, Chromatography, MESH: Kinetics, Systems Biology, 030302 biochemistry & molecular biology, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV] Life Sciences [q-bio], DNA-Binding Proteins, MESH: Proteome, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM], MESH: Systems Biology, MESH: Proteins / chemistry, Biotechnology, MESH: Protein Interaction Mapping / methods, High-throughput screening, PDZ domain, Computational biology, Biology, MESH: Chromatography, DNA-binding protein, Article, Protein–protein interaction, 03 medical and health sciences, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, Humans, Short linear motif, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, [SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM], MESH: Repressor Proteins / chemistry, Molecular Biology, 030304 developmental biology, MESH: Humans, Proteins, Cell Biology, Oncogene Proteins, Viral, Affinities, Molecular biology, High-Throughput Screening Assays, Repressor Proteins, Kinetics
-
3
المؤلفون: Ching Chiek Gene Koh, Stephen Tate, Samuel L. Bader, George Rosenberger, Robert L. Moritz, Marco Faini, Mariette Matondo, Eric W. Deutsch, Tiannan Guo, Anton Vichalkovski, Etienne Caron, Henry H N Lam, David S. Campbell, Petri Kouvonen, H. Alexander Ebhardt, Olga T. Schubert, Hannes L. Röst, Moritz Heusel, Yansheng Liu, Ruedi Aebersold, Ben C. Collins, Pouya Faridi
المساهمون: Institute of Molecular Systems Biology [Zurich], Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), PhD Program in Systems Biology [Zurich], Universität Zürich [Zürich] = University of Zurich (UZH)- Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Universität Heidelberg [Heidelberg], Competence Centre for Systems Physiology and Metabolic Diseases [Zurich] (CC-SPMD), Shiraz University of Medical Sciences [Iran] (SUMS), Hong Kong University of Science and Technology (HKUST), Institute for Systems Biology [Seattle] (ISB), SCIEX, Universität Zürich [Zürich] = University of Zurich (UZH), G.R. was funded by the Swiss Federal Commission for Technology and Innovation CTI (13539.1 PFFLI-LS). H.L.R. was funded by ETH Zurich (ETH-30 11-2). P.K. was supported by the Finnish Cultural Foundation. E.C. was supported by a Marie Curie Intra-European Fellowship. M.F. was supported by a long-term fellowship from the European Molecular Biology Organization. M.M was funded by TRIREME. H.L. was funded by the General Research Fund (#602413) of the Research Grants Council of the Hong Kong Special Administrative Region Government. S.L.B was supported by a fellowship from the Swiss National Science Foundation (fellowship PBZHP3 143482). R.L.M., D.S.C. and E.W.D are supported in part by federal funds from the American Recovery and Reinvestment Act through Grant RC2 HG005805 from the National Human Genome Research Institute, the National Institutes of Health National Institute of General Medical Sciences under grant Nos. 2P50 GM076547/Center for Systems Biology, GM087221 and S10RR027584. R.A. was funded by the advanced European Research Council grant Proteomics v3.0 (ERC-2008-AdG_20080422), the PhosphonetX project of SystemsX.ch, and the Swiss National Science Foundation (3100A0-107679)., We would like to thank Sharon Rashi-Elkeles for the generation of the CAL51 cells, the ITS Scientific IT Services of ETH Zurich for support and maintenance of the lab-internal computing infrastructure and the PRIDE Team of EBI for support of data deposition to the ProteomeXchange Consortium., European Project: 233226,EC:FP7:ERC,ERC-2008-AdG,PROTEOMICS V3.0(2009), Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology in Zürich [Zürich] (ETH Zürich), Universität Zürich [Zürich] (UZH)-Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology in Zürich [Zürich] (ETH Zürich), Institute for Systems Biology (ISB), Universität Zürich [Zürich] (UZH), Universität Heidelberg [Heidelberg] = Heidelberg University
المصدر: Rosenberger, G, Koh, C C, Guo, T, Röst, H L, Kouvonen, P, Collins, B C, Heusel, M, Liu, Y, Caron, E, Vichalkovski, A, Faini, M, Schubert, O T, Faridi, P, Ebhardt, H A, Matondo, M, Lam, H, Bader, S L, Campbell, D S, Deutsch, E W, Moritz, R L, Tate, S & Aebersold, R 2014, ' A repository of assays to quantify 10,000 human proteins by SWATH-MS ', Scientific Data, vol. 1, 140031 . https://doi.org/10.1038/sdata.2014.31
Scientific Data
Scientific Data, Nature Publishing Group, 2014, 1 (1), pp.140031. ⟨10.1038/sdata.2014.31⟩
Scientific Data, 2014, 1 (1), pp.140031. ⟨10.1038/sdata.2014.31⟩مصطلحات موضوعية: Statistics and Probability, Proteomics, Data Descriptor, Proteome, Systems biology, [SDV]Life Sciences [q-bio], MESH: Mass Spectrometry / methods, Computational biology, Library and Information Sciences, Biology, Mass spectrometry, Mass Spectrometry, Education, 03 medical and health sciences, Humans, Data-independent acquisition, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Databases, Protein, 030304 developmental biology, 0303 health sciences, MESH: Humans, MESH: Databases, Protein, 030302 biochemistry & molecular biology, Selected reaction monitoring, Proteins, Molecular biology, Computer Science Applications, MESH: Proteomics / methods, Targeted mass spectrometry, MESH: Proteins / chemistry, MESH: Proteome* / chemistry, Statistics, Probability and Uncertainty, UniProt, Information Systems
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c69c01856aa3179e6b21b9a2bb13a7cf
https://pure.qub.ac.uk/en/publications/a-repository-of-assays-to-quantify-10000-human-proteins -by-swathms(90398d46-1d47-4201-a87d-293b29f71dd0).html -
4
المؤلفون: Bruno O. Villoutreix, Robin Fåhraeus, Fabien Calvo, Benoit Deprez, Maria A. Miteva, Karine Bastard, Jean-Luc Poyet, Olivier Sperandio
المساهمون: Pharmacochimie Moléculaire et Cellulaire (PMC - UMR_S 648), Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Chu (saint-Louis)/inserm, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Laboratoire de pharmacologie expérimentale et clinique : cibles moléculaires en cancérologie ((U 716)), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Paris Diderot - Paris 7 (UPD7)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Biostructures et Decouverte de Medicament, Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille, Droit et Santé, Inserm Cdithem screening project, Villoutreix, Bruno, Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Descartes - Paris 5 (UPD5), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Pharmacochimie Moléculaire et Cellulaire ( PMC - UMR_S 648 ), Centre National de la Recherche Scientifique ( CNRS ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Université Paris Descartes - Paris 5 ( UPD5 ), Université Paris Diderot - Paris 7 ( UPD7 ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ), Cibles Moleculaires Dans les Cancers, Réseau International des Instituts Pasteur ( RIIP ) -Réseau International des Instituts Pasteur ( RIIP ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Université de Lille, Droit et Santé
المصدر: Current Pharmaceutical Biotechnology
Current Pharmaceutical Biotechnology, 2008, 9 (2), pp.103-122. ⟨10.2174/138920108783955218⟩
Current Pharmaceutical Biotechnology, Bentham Science Publishers, 2008, 9 (2), pp.103-122. ⟨10.2174/138920108783955218⟩
2008, 9 (2), pp.103-22مصطلحات موضوعية: Models, Molecular, Protein Conformation, Druggability, Pharmaceutical Science, MESH: Amino Acid Sequence, Bioinformatics, 01 natural sciences, MESH: Models, Molecular, protein-protein interaction, MESH: Protein Conformation, Sequence Analysis, Protein, Protein Interaction Mapping, [ SDV.BIBS ] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], 0303 health sciences, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Programming method, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Pharmaceutical Preparations, Macromolecular Complexes, MESH: Pharmaceutical Preparations/chemistry, Algorithms, Protein Binding, Biotechnology, MESH: Models, Chemical, In silico, Molecular Sequence Data, MESH: Algorithms, Computational biology, Biology, Protein–protein interaction, MESH: Proteins/chemistry, 03 medical and health sciences, [ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM], MESH: Proteins/ultrastructure, MESH: Protein Binding, Amino Acid Sequence, MESH: Drug Design, 030304 developmental biology, Virtual screening, computational biology and chemistry, Binding Sites, MESH: Molecular Sequence Data, 010405 organic chemistry, Proteins, virtual screening, MESH: Sequence Analysis, Protein/methods, 0104 chemical sciences, MESH: Protein Interaction Mapping/methods, Models, Chemical, MESH: Binding Sites, Docking (molecular), Drug Design, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d45b768c9db51f1001e57231e827526
https://www.hal.inserm.fr/inserm-00273685/document -
5
المؤلفون: Garnier, Jean, Gibrat, Jean-François, Robson, Barry
المساهمون: Unité de biologie cellulaire et moléculaire, Institut National de la Recherche Agronomique (INRA), R.F. Doolittle (Editeur), ProdInra, Migration, Unite de Bioinformatique Biotechnologies
المصدر: Computer methods for macromolecular sequence analysis
Computer methods for macromolecular sequence analysis, 266, Academic Press, 1996, Methods in Enzymology, 0-12-182167-6
Methods in Enzymology
Methods in Enzymology, pp.540-553, 1996, ⟨10.1016/S0076-6879(96)66034-0⟩مصطلحات موضوعية: MESH: Serpins / chemistry, MESH: Molecular Sequence Data, MESH: Bayes Theorem, [SDV]Life Sciences [q-bio], MESH: Mathematics, MESH: Protein Structure, Secondary, MESH: Amino Acid Sequence, MESH: Crystallography, X-Ray, MESH: Databases, Factual, MESH: Reproducibility of Results, [SDV] Life Sciences [q-bio], MESH: Software, MESH: Proteins / chemistry, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], ComputingMilieux_MISCELLANEOUS
