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المؤلفون: Tomasz Osinski, David Prangishvili, Edward H. Egelman, Nicholas E. Sherman, Joseph S. Wall, Virginija Cvirkaite-Krupovic, Frank DiMaio, Zhangli Su, Mart Krupovic, Fengbin Wang, Mark A. B. Kreutzberger, Guilherme A. P. de Oliveira
المساهمون: University of Virginia [Charlottesville], Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Department of Biochemistry [Washington ], University of Washington [Seattle], Brookhaven National Laboratory [Upton, NY] (BNL), U.S. Department of Energy [Washington] (DOE)-UT-Battelle, LLC-Stony Brook University [SUNY] (SBU), State University of New York (SUNY)-State University of New York (SUNY), This work was supported by NIH grants GM122510 (to E.H.E.) and GM123089 (to F.D.), as well as l’Agence Nationale de la Recherche project ENVIRA (ANR-17-CE15-0005-01 to M.K.). M.A.B.K. was supported by NIH grant T32 GM080186. The cryo-EM imaging conducted at the Molecular Electron Microscopy Core facility at the University of Virginia was supported by the School of Medicine and built with NIH grant G20-RR31199. The Titan Krios and Falcon II direct electron detectors were obtained with NIH grants S10-RR025067 and S10-OD018149, respectively., We thank V. Conticello for the suggestion of TFMS. We are also grateful to the Ultrastructural BioImaging (UTechS UBI) unit of Institut Pasteur for access to electron microscopes., ANR-17-CE15-0005,ENVIRA,Remodelage de la membrane cytoplasmique par les virus enveloppés d'archées(2017), University of Virginia, Institut Pasteur [Paris] (IP), UT-Battelle, LLC-Stony Brook University [SUNY] (SBU), State University of New York (SUNY)-State University of New York (SUNY)-U.S. Department of Energy [Washington] (DOE)
المصدر: Nature Microbiology
Nature Microbiology, Nature Publishing Group, 2019, 4 (8), pp.1401-1410. ⟨10.1038/s41564-019-0458-x⟩
Nature microbiology
Nature Microbiology, 2019, 4 (8), pp.1401-1410. ⟨10.1038/s41564-019-0458-x⟩مصطلحات موضوعية: Models, Molecular, MESH: Archaea/cytology, MESH: Fimbriae Proteins/chemistry, Glycosylation, Protein Conformation, MESH: Sequence Analysis, Protein, MESH: Trypsin, Applied Microbiology and Biotechnology, Pilus, MESH: Fimbriae Proteins/ultrastructure, Serine, chemistry.chemical_compound, MESH: Protein Conformation, Sequence Analysis, Protein, Trypsin, Threonine, Guanidine, 0303 health sciences, biology, Protein Stability, Chemistry, MESH: Hydrophobic and Hydrophilic Interactions, MESH: Archaeal Proteins/chemistry, Archaeal Viruses, MESH: Glycosylation, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, MESH: Pepsin A, Fimbriae Proteins, MESH: Cryoelectron Microscopy, Hydrophobic and Hydrophilic Interactions, MESH: Models, Molecular, Microbiology (medical), MESH: Archaea/metabolism, Archaeal Proteins, Immunology, Microbiology, Article, Sulfolobus, Applied microbiology, 03 medical and health sciences, MESH: Sulfolobus/cytology, MESH: Protein Stability, Genetics, MESH: Fimbriae Proteins/metabolism, MESH: Sulfolobus/chemistry, 030304 developmental biology, MESH: Sulfolobus/metabolism, MESH: Archaeal Proteins/ultrastructure, 030306 microbiology, Cryoelectron Microscopy, MESH: Archaea/growth & development, Cell Biology, Archaea, Pepsin A, 13. Climate action, Pilin, biology.protein, Biophysics, Flagellin, MESH: Archaeal Proteins/metabolism
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المؤلفون: Liu, Ying, Osinski, Tomasz, Wang, Fengbin, Krupovic, Mart, Schouten, Stefan, Kasson, Peter, Prangishvili, David, Egelman, Edward H., non-UU output of UU-AW members
المساهمون: Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], University of Virginia [Charlottesville], Royal Netherlands Institute for Sea Research (NIOZ), Utrecht University [Utrecht], This work was supported by NIH R35GM122510 (to E.H.E.), the European Union’s Horizon 2020 research and innovation program under grant agreement 685778, project VIRUS‑X (to D.P.) and l’Agence Nationale de la Recherche (France) project ENVIRA (to M.K.). The cryo-EM imaging was conducted at the Molecular Electron Microscopy Core facility at the University of Virginia, which is supported by the School of Medicine and built with NIH grant G20-RR31199. The Titan Krios and Falcon II direct electron detector were obtained with NIH S10-RR025067 and S10-OD018149, respectively. Ellen Hopmans and Caglar Yildiz (NIOZ) are thanked for analytical support., ANR-17-CE15-0005,ENVIRA,Remodelage de la membrane cytoplasmique par les virus enveloppés d'archées(2017), European Project: 685778,H2020,H2020-LEIT-BIO-2015-1,Virus-X(2016), Institut Pasteur [Paris] (IP), University of Virginia, non-UU output of UU-AW members
المصدر: Nature Communications
Nature Communications, Vol 9, Iss 1, Pp 1-10 (2018)
Nature Communications, 9(1). Nature Publishing Group
Nature Communications, Nature Publishing Group, 2018, 9 (1), pp.3360. ⟨10.1038/s41467-018-05684-6⟩
Nature Communications, 2018, 9 (1), pp.3360. ⟨10.1038/s41467-018-05684-6⟩مصطلحات موضوعية: 0301 basic medicine, Chemistry(all), [SDV]Life Sciences [q-bio], viruses, ved/biology.organism_classification_rank.species, General Physics and Astronomy, MESH: Protein Structure, Secondary, Biochemistry, Protein Structure, Secondary, chemistry.chemical_compound, Extreme environment, lcsh:Science, Genetics, Sulfolobus shibatae, Multidisciplinary, biology, MESH: DNA Viruses, Sulfolobus, MESH: Sulfolobus, Acidophile, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, MESH: Virion, MESH: Cryoelectron Microscopy, MESH: Genome, Viral, Science, macromolecular substances, Genome, Viral, Physics and Astronomy(all), General Biochemistry, Genetics and Molecular Biology, Virus, Article, 03 medical and health sciences, Viral Proteins, Archaeol, 030102 biochemistry & molecular biology, ved/biology, Biochemistry, Genetics and Molecular Biology(all), Cryoelectron Microscopy, DNA Viruses, Virion, General Chemistry, biology.organism_classification, MESH: Viral Proteins, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, 030104 developmental biology, chemistry, lcsh:Q, DNA, Archaea, Genetics and Molecular Biology(all)
وصف الملف: application/pdf; image/pdf
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المؤلفون: David Prangishvili, Gérard Pehau-Arnaudet, Yoshizumi Ishino, Mart Krupovic, Ying Liu, Sonoko Ishino
المساهمون: Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Kyushu University [Fukuoka], Microscopie ultrastructurale - Ultrapole (CITECH), This work was supported by the European Union's Horizon 2020 research and innovation program under grant agreement 685778, project VIRUS-X., We are grateful to E. V. Koonin and T. G. Senkevich for their help in collecting environmental samples from hot springs in Beppu, Japan, to M. Duchateau (Proteomics Platform, Institut Pasteur) for help with proteomics analyses, and to M. Nilges and the Equipex CACSICE for providing the Falcon II direct detector., European Project: 685778,H2020,H2020-LEIT-BIO-2015-1,Virus-X(2016), Institut Pasteur [Paris] (IP), Kyushu University
المصدر: Journal of Virology
Journal of Virology, American Society for Microbiology, 2017, 91 (13), pp.e00589-17. ⟨10.1128/JVI.00589-17⟩
Journal of Virology, 2017, 91 (13), pp.e00589-17. ⟨10.1128/JVI.00589-17⟩مصطلحات موضوعية: 0301 basic medicine, MESH: Sequence Analysis, DNA, MESH: Sequence Homology, Amino Acid, viruses, [SDV]Life Sciences [q-bio], virion structure, Genome, hyperthermophile, MESH: Gene Order, Gene Order, Genetics, biology, viral genome, Archaeal Viruses, MESH: DNA Viruses, Sulfolobus, Capsid, MESH: Sulfolobus, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, MESH: Virion, MESH: Genome, Viral, archaea, Immunology, Genome, Viral, MESH: Microscopy, Electron, Microbiology, Virus, 03 medical and health sciences, Open Reading Frames, Viral Proteins, MESH: Viral Structures, Virology, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Viral Structures, Sequence Homology, Amino Acid, DNA Viruses, Virion, Sequence Analysis, DNA, MESH: Open Reading Frames, biology.organism_classification, MESH: Viral Proteins, Hyperthermophile, Open reading frame, Microscopy, Electron, 030104 developmental biology, Genetic Diversity and Evolution, Insect Science, Archaea
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::edf821900a5d981f265376b08e9769e8
https://hal-pasteur.archives-ouvertes.fr/pasteur-01977362 -
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المساهمون: New England Biolabs, Indiana University [Bloomington], Indiana University System, University of St Andrews [Scotland], Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris] (IP), Institut Pasteur [Paris], University of St Andrews. School of Biology, University of St Andrews. Biomedical Sciences Research Complex
المصدر: Journal of Virology
Journal of Virology, 2014, 88 (12), pp.7105--7108. ⟨10.1128/JVI.00636-14⟩
Journal of Virology, American Society for Microbiology, 2014, 88 (12), pp.7105--7108. ⟨10.1128/JVI.00636-14⟩مصطلحات موضوعية: Models, Molecular, QH301 Biology, Archaeal Proteins, [SDV]Life Sciences [q-bio], Molecular Sequence Data, Immunology, Eukaryotic DNA replication, MESH: Amino Acid Sequence, Biology, Virus Replication, Microbiology, DNA polymerase delta, Sulfolobus, QH301, Viral Proteins, Replication factor C, SeqA protein domain, Control of chromosome duplication, Proliferating Cell Nuclear Antigen, Virology, MESH: Protein Binding, Amino Acid Sequence, Genetics, MESH: Molecular Sequence Data, DNA clamp, MESH: DNA, Archaeal, MESH: Virus Replication, DNA replication, MESH: Archaeal Proteins, MESH: Viral Proteins, Rudiviridae, Genome Replication and Regulation of Viral Gene Expression, 3. Good health, DNA, Archaeal, MESH: Proliferating Cell Nuclear Antigen, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, MESH: Sulfolobus, Insect Science, MESH: Rudiviridae, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Replisome, MESH: Models, Molecular, Protein Binding
وصف الملف: application/pdf
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55eb8752c08d81cb96e6db39f3cc3c27
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المؤلفون: Priyadarshi Satpati, Thomas Simonson
المساهمون: Laboratoire de Biochimie de l'Ecole polytechnique (BIOC), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)
المصدر: Biochemistry
Biochemistry, American Chemical Society, 2012, 51 (1), pp.353-61. ⟨10.1021/bi201675n⟩مصطلحات موضوعية: MESH: Signal Transduction, MESH: GTP Phosphohydrolases, Protein Conformation, Stereochemistry, Archaeal Proteins, GTPase, Molecular Dynamics Simulation, Crystallography, X-Ray, Ligands, Biochemistry, Ribosome, Dissociation (chemistry), GTP Phosphohydrolases, Molecular dynamics, MESH: Protein Conformation, Peptide Initiation Factors, MESH: Ligands, Protein biosynthesis, Pi, MESH: Molecular Dynamics Simulation, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, MESH: Peptide Initiation Factors, Nucleotides, Chemistry, Prokaryotic initiation factor-2, MESH: Archaeal Proteins, MESH: Crystallography, X-Ray, MESH: Nucleotides, Transfer RNA, Sulfolobus solfataricus, MESH: Sulfolobus solfataricus, Signal Transduction
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المؤلفون: Yves Mechulam, Laure Yatime, Sylvain Blanquet, Emmanuelle Schmitt
المساهمون: Laboratoire de Biochimie de l'Ecole polytechnique (BIOC), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)
المصدر: Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2007, 104 (47), pp.18445-50. ⟨10.1073/pnas.0706784104⟩
Yatime, L, Mechulam, Y, Blanquet, S & Schmitt, E 2007, ' Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states ', Proceedings of the National Academy of Sciences of the United States of America, vol. 104, no. 47, pp. 18445-50 . https://doi.org/10.1073/pnas.0706784104مصطلحات موضوعية: Models, Molecular, MESH: Protein Structure, Quaternary, Stereochemistry, Archaeal Proteins, MESH: Guanosine Diphosphate, Biology, Crystallography, X-Ray, Guanosine Diphosphate, MESH: Protein Structure, Tertiary, Eukaryotic translation, Start codon, Peptide Initiation Factors, Eukaryotic initiation factor, MESH: Protein Binding, Initiation factor, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Protein Structure, Quaternary, MESH: Peptide Initiation Factors, eIF2, Binding Sites, MESH: Guanosine Triphosphate, Multidisciplinary, Prokaryotic initiation factor-2, MESH: Archaeal Proteins, Biological Sciences, MESH: Protein Subunits, MESH: Crystallography, X-Ray, TRNA binding, Protein Structure, Tertiary, Protein Subunits, MESH: Binding Sites, MESH: Dimerization, Biochemistry, Transfer RNA, Sulfolobus solfataricus, Guanosine Triphosphate, Dimerization, MESH: Sulfolobus solfataricus, MESH: Models, Molecular, Protein Binding
URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d37134e260d741d3f93c5fa1a899542
https://doi.org/10.1073/pnas.0706784104 -
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المؤلفون: Carole Jaubert, Jacques Oberto, Guennadi Sezonov, Diego Cortez, Mart Krupovic, Chloé Danioux, Qunxin She, Patrick Forterre, Ariane Bize, David Prangishvili
المساهمون: Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Institut de génétique et microbiologie [Orsay] (IGM), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Hydrosystèmes et Bioprocédés (UR HBAN), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Danish Archaea Centre, Department of Biology [Copenhagen], Faculty of Science [Copenhagen], University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Science [Copenhagen], University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU), Systématique, adaptation, évolution (SAE), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), This work was supported by PhD fellowships from the ‘Ministère de l'enseignement supérieur et de la recherche’ (C.J. and C.D.) and by Pasteur-Weizmann (C.J.) allocations., We thank Nuno Peixeiro and Sophie Schbath for helpful discussions., Institut Pasteur [Paris] (IP), University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)-Faculty of Science [Copenhagen], University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)
المصدر: Open Biology, Vol 3, Iss 4 (2013)
Biology Open
Biology Open, Royal Society, 2013, 3 (4), pp.130010. ⟨10.1098/rsob.130010⟩
Biology Open, 2013, 3 (4), pp.130010. ⟨10.1098/rsob.130010⟩
Jaubert, C, Danioux, C, Oberto, J, Cortez, D, Bize, A, Krupovic, M, She, Q, Forterre, P, Prangishvili, D & Sezonov, G 2013, ' Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon ', Open Biology, vol. 3, no. 4 . https://doi.org/10.1098/rsob.130010
Open Biologyمصطلحات موضوعية: MESH: Sequence Analysis, DNA, Genome, Genes, Archaeal, MESH: RNA, Transfer/metabolism, Plasmid, RNA, Transfer, CRISPR, Clustered Regularly Interspaced Short Palindromic Repeats, genetics, MESH: Models, Genetic, Insertion sequence, MESH: Sulfolobus/genetics, crispr, MESH: Phylogeny, lcsh:QH301-705.5, Phylogeny, genome analysis, Genetics, 0303 health sciences, biology, General Neuroscience, MESH: Genomics, Genomics, MESH: Toxins, Biological/metabolism, Sulfolobus, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, MESH: RNA, Transfer/genetics, MESH: Genes, Archaeal, Research Article, Gene Transfer, Horizontal, archaea, Immunology, Replication Origin, General Biochemistry, Genetics and Molecular Biology, 03 medical and health sciences, MESH: DNA Transposable Elements/genetics, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, sulfolobus islandicus lal14/1, MESH: Replication Origin/genetics, Toxins, Biological, 030304 developmental biology, Models, Genetic, 030306 microbiology, Research, MESH: Antitoxins/metabolism, MESH: Clustered Regularly Interspaced Short Palindromic Repeats/genetics, Sequence Analysis, DNA, biology.organism_classification, MESH: Gene Transfer, Horizontal, SULFOLOBUS ISLANDICUS, lcsh:Biology (General), MESH: Sulfolobus/classification, DNA Transposable Elements, CRISPR Loci, Antitoxins, Mobile genetic elements, Rudivirus
وصف الملف: application/pdf
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المؤلفون: Dimaio, Frank, Yu, Xiong, Rensen, Elena, Krupovic, Mart, Prangishvili, David, Egelman, Edward
المساهمون: University of Washington [Seattle], University of Virginia [Charlottesville], Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], University of Virginia, Institut Pasteur [Paris] (IP)
المصدر: Science
Science, American Association for the Advancement of Science, 2015, 348 (6237), pp.914-917. ⟨10.1126/science.aaa4181⟩
Science, 2015, 348 (6237), pp.914-917. ⟨10.1126/science.aaa4181⟩مصطلحات موضوعية: MESH: Molecular Sequence Data, MESH: Protein Multimerization, viruses, [SDV]Life Sciences [q-bio], MESH: Protein Structure, Secondary, MESH: Amino Acid Sequence, MESH: Spores, Bacterial, MESH: Sulfolobus, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], MESH: Rudiviridae, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, MESH: Virion, MESH: Cryoelectron Microscopy, MESH: DNA, A-Form
URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::087ab4b62feb80d278e1834d4e431800
https://hal-pasteur.archives-ouvertes.fr/pasteur-01977386 -
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المؤلفون: Pierre Plateau, Christine Lazennec, Emmanuelle Schmitt, Sylvain Blanquet, Michel Fromant, Yves Mechulam
المساهمون: Laboratoire de Biochimie de l'Ecole polytechnique (BIOC), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS)
المصدر: Biochemistry
Biochemistry, American Chemical Society, 2005, 44 (11), pp.4294-301. ⟨10.1021/bi047711k⟩مصطلحات موضوعية: Threonine, ved/biology.organism_classification_rank.species, MESH: Protein Structure, Secondary, MESH: Catalytic Domain, MESH: Amino Acid Sequence, Crystal structure, Crystallography, X-Ray, MESH: Aspartic Acid, Biochemistry, Protein Structure, Secondary, Substrate Specificity, Catalytic Domain, MESH: Animals, MESH: Threonine, MESH: Crystallization, chemistry.chemical_classification, biology, Sulfolobus solfataricus, Resolution (electron density), MESH: Archaeal Proteins, MESH: Mutagenesis, Site-Directed, Crystallization, MESH: Enzyme Activation, Stereochemistry, Archaeal Proteins, Molecular Sequence Data, Hydrolase, Animals, Humans, MESH: Lysine, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, Amino Acid Sequence, Aspartic Acid, Binding Sites, MESH: Humans, MESH: Molecular Sequence Data, ved/biology, Lysine, Active site, MESH: Crystallography, X-Ray, biology.organism_classification, Enzyme Activation, Enzyme, MESH: Binding Sites, chemistry, Mutagenesis, Site-Directed, biology.protein, MESH: Substrate Specificity, MESH: Carboxylic Ester Hydrolases, Carboxylic Ester Hydrolases, MESH: Sulfolobus solfataricus, Bacteria, Archaea
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المؤلفون: Michel Panvert, Javier Pérez, Emmanuelle Schmitt, Christine Lazennec-Schurdevin, Andrew Thompson, Pierre-Damien Coureux, Yves Mechulam
المساهمون: Laboratoire de Biochimie de l'Ecole polytechnique (BIOC), École polytechnique (X)-Centre National de la Recherche Scientifique (CNRS), Synchrotron SOLEIL (SSOLEIL), Centre National de la Recherche Scientifique (CNRS)
المصدر: Nature Structural and Molecular Biology
Nature Structural and Molecular Biology, Nature Publishing Group, 2012, 19 (4), pp.450-4. ⟨10.1038/nsmb.2259⟩مصطلحات موضوعية: Models, Molecular, RNA, Transfer, Met, Stereochemistry, Protein Conformation, Archaeal Proteins, ved/biology.organism_classification_rank.species, RNA, Archaeal, Biology, Crystallography, X-Ray, 03 medical and health sciences, Protein structure, MESH: Protein Conformation, Start codon, Structural Biology, Peptide Initiation Factors, MESH: Protein Binding, [SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology, MESH: Peptide Initiation Factors, Molecular Biology, Ternary complex, 030304 developmental biology, 0303 health sciences, MESH: Guanosine Triphosphate, ved/biology, 030302 biochemistry & molecular biology, Sulfolobus solfataricus, MESH: RNA, Transfer, Met, RNA, Translation (biology), MESH: Archaeal Proteins, MESH: Crystallography, X-Ray, MESH: Protein Subunits, Molecular biology, Elongation factor, Protein Subunits, MESH: Nucleic Acid Conformation, Transfer RNA, Nucleic Acid Conformation, MESH: RNA, Archaeal, Guanosine Triphosphate, MESH: Sulfolobus solfataricus, MESH: Models, Molecular, Protein Binding
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