المؤلفون: Patel, Sagar, Panchal, Hetalkumar, Anjaria, Kalpesh

المصدر: 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops Bioinformatics and Biomedicine Workshops (BIBMW), 2012 IEEE International Conference on. :917-921 Oct, 2012

Relation: 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)

المؤلفون: Pirovano, Walter^Aff2, Abeln, Sanne^Aff2, Feenstra, K. Anton^Aff2, Heringa, Jaap^Aff2

المساهمون: Frishman, Dmitrij^Aff1

المصدر: Structural Bioinformatics of Membrane Proteins. :103-122

المؤلفون: Helena Rebelo-de-Andrade, Marta Gíria, João M. Trigueiro-Louro, Vanessa Correia, Inês Figueiredo-Nunes

المصدر: Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 2117-2131 (2020)
Computational and Structural Biotechnology Journal

مصطلحات موضوعية: Infecções Respiratórias, nts, nucleotides, RBD, Receptor-Binding Domain, viruses, CoVs, coronavirus, Druggability, Coronavirus Disease, CDR, consensus druggable residue, Biochemistry, SD2, subdomain 2, Bat-SL-CoVs, bat SARS-like coronavirus, 0302 clinical medicine, Sequence Conservation, Structural Biology, HR1, heptad repeat 1, Pharmacological modulation, FP, fusion peptide, TMPRSS2, transmembrane protease serine 2, CC, conserved cluster, 0303 health sciences, T-RHS, top-ranked hot spots, HR2, heptad repeat 2, ACE2, angiotensin-converting enzyme2, virus diseases, DGSS, DoGSiteScorer, Computer Science Applications, Coronavirus disease, Druggability Prediction, 030220 oncology & carcinogenesis, CP, cytoplasmic domain, CS, conservation score, Sv, shorter variant, PDS, PockDrug-Server, Druggability prediction, Research Article, Biotechnology, Novel Antiviral Targets, Coronavirus disease 2019 (COVID-19), Sequence analysis, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), Protein subunit, lcsh:Biotechnology, aa, amino acid, Sequence conservation, Biophysics, Computational biology, Therapeutics, Spike protein, Biology, SARS-CoV-2, severe acute respiratory syndrome coronavirus 2, SD1, subdomain 1, SARS-CoVs, severe acute respiratory syndrome coronavirus, 03 medical and health sciences, Betacoronavirus, PDB, Protein Data Bank, lcsh:TP248.13-248.65, Genetics, hSARSr-CoVs, human Severe acute respiratory syndrome-related coronavirus, MERSr-CoVs, middle east respiratory syndrome-related coronavirus, SARSr-CoVs, severe acute respiratory syndrome-related coronavirus, NTD, N-terminal domain, ComputingMethodologies_COMPUTERGRAPHICS, 030304 developmental biology, Spike Protein, SARS-CoV-2, SP, small pocket, COVID-19, CH, central helix, S, Spike, respiratory tract diseases, MERS-CoVs, middle east respiratory syndrome coronavirus, MSA, multiple sequence alignment, CR, connecting region, SF, SiteFinder from MOE, CDP, consensus druggable pocket, Beta-CoVs, betacoronavirus, Structure based, Novel antiviral targets, CD, connector domain, DPP4, dipeptidyl peptidase-4

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c63598730c179325ddc5c9d3b95a8608
http://www.sciencedirect.com/science/article/pii/S2001037020303494

المؤلفون: Nurit Livnat-Levanon, Nir Ben-Tal, Elena Vigonsky, Amy C. Rosenzweig, Rose C. Hadley, Jessica Rose, Oded Lewinson, Gal Masrati, Daniel Zhitnitsky

المصدر: The Journal of Biological Chemistry

مصطلحات موضوعية: crystal structure, Operon, Protein Data Bank (RCSB PDB), lac operon, HMM, Hidden Markov model, Biochemistry, NDH-2, NADH dehydrogenase II, chemistry.chemical_compound, Structure-Activity Relationship, JGI, Joint Genome Institute, PDB, Protein Data Bank, Metalloprotein, Escherichia coli, pfam10709, Protein family 10709, Molecular Biology, Chelating Agents, chemistry.chemical_classification, Escherichia coli Proteins, DUF2511, Domain of Unknown Function 2511, metalloprotein, Cue, Cu efflux, TCEP, Tris(2-carboxyethyl)phosphine, Cell Biology, Periplasmic space, bioinformatics, Cus, Cu sensing, E. coli, ICP–MS, inductively coupled plasma MS, MSA, multiple sequence alignment, SEC–MALS, size-exclusion chromatography with multiangle light scattering, chemistry, Membrane protein, DOE, Department of Energy, Periplasmic Binding Proteins, copper transport, metal homeostasis, AZY, yobA–yebZ–yebY, Cop/Pco, copper resistance or plasmid-borne copper resistance, Copper, Isopropyl β-D-1-thiogalactopyranoside, Cysteine, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1ba8ff10957a16317cb12cd0ca39a6a7
http://europepmc.org/articles/PMC8689200

المؤلفون: Florian Bernard, Yaser Hashem, Denis Dupuy, Camila Parrot, Marie Sissler, Luc Moulinier

المساهمون: Centre National de la Recherche Scientifique (CNRS)

المصدر: Journal of Biological Chemistry
Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2021, 297 (2), pp.100913. ⟨10.1016/j.jbc.2021.100913⟩
The Journal of Biological Chemistry

مصطلحات موضوعية: 0301 basic medicine, [SDV]Life Sciences [q-bio], Trans-splicing, MTS, mt targeting sequence, Computational biology, Biology, Biochemistry, Amino Acyl-tRNA Synthetases, 03 medical and health sciences, chemistry.chemical_compound, Cytosol, RNA, Transfer, aaRSs, aminoacyl-tRNA synthetases, Complementary DNA, Animals, Humans, aminoacyl-tRNA synthetase, MARS, multi-aaRS complex, NTD, N-terminal domain, Amino Acid Sequence, Amino Acids, Leishmaniasis, Molecular Biology, Gene, Phylogeny, ComputingMilieux_MISCELLANEOUS, Leishmania, chemistry.chemical_classification, trans-splicing, Multiple sequence alignment, Sequence Homology, Amino Acid, 030102 biochemistry & molecular biology, Aminoacyl tRNA synthetase, C-terminus, Cell Biology, species-specific insertions/extensions, CTD, C-terminal domain, Mitochondria, 3. Good health, Amino acid, kinetoplastids, MSA, multiple sequence alignment, 030104 developmental biology, chemistry, Transfer RNA, mt, mitochondrial, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dacf02e49230ad2b20b5f2b86b5dbdfc
https://hal.archives-ouvertes.fr/hal-03365770

المؤلفون: Ioannis A. Tamposis, Panagiota I. Kontou, Dimitra Sarantopoulou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Evangelia A. Stasi

المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 6090-6097 (2021)

مصطلحات موضوعية: JUCHMME, Java Utility for Class Hidden Markov Models and Extensions, Neural Networks, Computer science, Biophysics, Markov process, Context (language use), Topology, Biochemistry, Field (computer science), symbols.namesake, Hidden Neural Networks, Structural Biology, Server, Membrane proteins, Genetics, Hidden Markov model, MCC, Matthews Correlation Coefficient, ML, Maximum Likelihood, Hidden Markov Models, ComputingMethodologies_COMPUTERGRAPHICS, SOV, segment overlap, Sequence, HMM, Hidden Markov Models, CHMM, Class Hidden Markov Models, Artificial neural network, Sequence analysis, Protein structure prediction, HNN, Hidden Neural Networks, Computer Science Applications, CML, Conditional Maximum Likelihood, NN, Neural Networks, EM, Expectation-Maximization, symbols, MSA, Multiple Sequence Alignment, TP248.13-248.65, Biotechnology, Research Article

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dae409373656d2ce9e5e0ceb3328950a
https://pubmed.ncbi.nlm.nih.gov/34849210

المؤلفون: Luis Sanchez-Pulido, Chris P. Ponting

المصدر: Journal of Molecular Biology

مصطلحات موضوعية: Models, Molecular, Computer science, Sequence analysis, Protein Conformation, Protein domain, Inference, Pfam, Protein Families Database, Computational biology, Review Article, MON1A, Monensin sensitivity protein 1A, Domain (software engineering), 03 medical and health sciences, BLAST, Basic Local Alignment Search Tool, 0302 clinical medicine, Structural Biology, Sequence Analysis, Protein, PDB, Protein Data Bank, Animals, Humans, DISC1, Disrupted in schizophrenia 1, C21ORF59, C21ORF59, Chromosome 21 Open Reading Frame 59, Molecular Biology, DISC1, Coevolution, 030304 developmental biology, Sequence (medicine), ComputingMethodologies_COMPUTERGRAPHICS, Structure (mathematical logic), 0303 health sciences, Sequence Homology, Amino Acid, CATH, Class Architecture Topology Homologous, Horizon, Proteins, CFAP298, STRING, Search Tool for the Retrieval of Interacting Genes/Proteins, MSA, Multiple sequence alignment, remote homology, coevolution, CFAP298, Cilia- and flagella-associated protein 298, 030217 neurology & neurosurgery, Algorithms

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57b7b22b0a7a1c8f7a6773bc0dd7d6b6
https://pubmed.ncbi.nlm.nih.gov/34139218

المؤلفون: Jeffrey L. Mendenhall, Bian Li, Jens Meiler

المصدر: Computational and Structural Biotechnology Journal, Vol 17, Iss, Pp 699-711 (2019)
Computational and Structural Biotechnology Journal

مصطلحات موضوعية: PPI, Protein-protein interaction, PPM, Positioning of proteins in membrane, Globular protein, Protein subunit, lcsh:Biotechnology, AUC, Area under the ROC curve, Biophysics, Weighted contact numbers, Biochemistry, RMSD, Root-mean-square distance, 03 medical and health sciences, symbols.namesake, Search engine, OPM, Orientations of proteins in membranes, 0302 clinical medicine, Structural Biology, lcsh:TP248.13-248.65, Genetics, PPV, Positive predictive value, TPR, True positive rate, TNR, True negative rate, Membrane protein docking, Integral membrane protein, Native structure, 030304 developmental biology, chemistry.chemical_classification, 0303 health sciences, PCC, Pearson correlation coefficient, Membrane protein interfaces, MAE, Mean absolute error, RSA, Relative solvent accessibility, Pearson product-moment correlation coefficient, 3. Good health, Computer Science Applications, IMP, Integral membrane protein, MSA, Multiple sequence alignment, chemistry, Docking (molecular), 030220 oncology & carcinogenesis, PSSM, Position-specific scoring matrix, symbols, PDB, Protein data bank, ROC, Receiver operating characteristic curve, Biological system, Neural networks, Research Article, WCN, Weighted contact number, Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e3823f076e75032c853f75bb7125650
http://www.sciencedirect.com/science/article/pii/S200103701930039X

المؤلفون: Alisdair R. Fernie, Federico Scossa

المصدر: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 1579-1594 (2021)

مصطلحات موضوعية: Ancestral reconstruction, GWAS, genome wide association study, Evolution, Biophysics, Genomics, Context (language use), Review, Biology, MCMC, Markov Chain Monte Carlo, Biochemistry, Ancestral sequence reconstruction, 03 medical and health sciences, SFS, site frequency spectrum, 0302 clinical medicine, Structural Biology, Molecular evolution, Phylogenetics, Gene duplication, Genetics, Gene, 030304 developmental biology, ComputingMethodologies_COMPUTERGRAPHICS, 0303 health sciences, GR, glucocorticoid receptor, CDS, coding sequence, InDel, insertion/deletion, NJ, neighbor-joining, MR, mineralcorticoid receptor, Plants, ASR, ancestral sequence reconstruction, Computer Science Applications, ML, maximum likelihood, MSA, multiple sequence alignment, Metabolism, Evolutionary biology, APR, ancestral protein resurrection, 030220 oncology & carcinogenesis, MP, maximum parsimony, TP248.13-248.65, Function (biology), Biotechnology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe12db7f633ec9a8ce8303182f5446d8
https://pubmed.ncbi.nlm.nih.gov/33868595

المؤلفون: Akriti Kodesia, Ashish, Nidhi Kalidas, Krishan Gopal Thakur, Srajan Kapoor

المصدر: The Journal of Biological Chemistry

مصطلحات موضوعية: Protein Conformation, alpha-Helical, Gliding motility, RLC7, Regulatory Light Chain 7, bacterial motility, Gene Expression, RomRX, Required for motility response regulator complex, Crystallography, X-Ray, Biochemistry, Cell polarity, Protein Isoforms, Cloning, Molecular, Myxococcus xanthus, Multiple sequence alignment, biology, RLC7 family, MglC, Mutual gliding motility protein C, Chemistry, ITC, isothermal titration calorimetry, Molecular Motor Proteins, SAXS, small-angle X-ray scattering, MglB, Mutual gliding-motility protein B, Cell Polarity, SAXS, Rg, radius of gyration, Recombinant Proteins, Molecular Docking Simulation, LAMTOR2, late endosomal/lysosomal adaptor and MAPK and MTOR activator 2, Thermodynamics, isothermal calorimetry, Dmax, maximum linear dimension, Research Article, Protein Binding, SEC, size-exclusion chromatography, Se-SAD, Selenomethionine Single-wavelength anomalous diffraction, Genetic Vectors, MglA, Mutual gliding-motility protein A, protein–protein interactions, Protein–protein interaction, TEV, tobacco etch virus, Bacterial Proteins, Escherichia coli, Protein Interaction Domains and Motifs, Molecular Biology, Binding Sites, polarity reversal, Mutagenesis, Isothermal titration calorimetry, Cell Biology, biology.organism_classification, MglC, MglB, MSA, multiple sequence alignment, Kinetics, NSD, normalized spatial discrepancy, Helix, Mutation, Biophysics, Protein Conformation, beta-Strand, Protein Multimerization

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0a2ccb9b91c770c6f8e4211d920ee9bc
http://europepmc.org/articles/PMC7949163