المؤلفون: Plubell DL; Department of Genome Sciences, University of Washington, Seattle WA., Remes PM; Thermo Fisher Scientific, San Jose, CA., Wu CC; Department of Genome Sciences, University of Washington, Seattle WA., Jacob CC; Thermo Fisher Scientific, San Jose, CA., Merrihew GE; Department of Genome Sciences, University of Washington, Seattle WA., Hsu C; Department of Genome Sciences, University of Washington, Seattle WA., Shulman N; Department of Genome Sciences, University of Washington, Seattle WA., MacLean BX; Department of Genome Sciences, University of Washington, Seattle WA., Heil L; Thermo Fisher Scientific, San Jose, CA., Poston K; Department of Neurology & Neurological Sciences, Stanford University, Palo Alto CA, USA., Montine T; Department of Pathology, Stanford University, Palo Alto CA, USA., MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle WA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jun 11. Date of Electronic Publication: 2024 Jun 11.

نوع المنشور: Journal Article; Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Remes PM; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134., Jacob CC; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134., Heil LR; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134., Shulman N; Department of Genome Sciences, University of Washington, 3720 15th St. NE, Seattle WA 98195., MacLean BX; Department of Genome Sciences, University of Washington, 3720 15th St. NE, Seattle WA 98195., MacCoss MJ; Department of Genome Sciences, University of Washington, 3720 15th St. NE, Seattle WA 98195.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jun 01. Date of Electronic Publication: 2024 Jun 01.

نوع المنشور: Journal Article; Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Rojas Echeverri JC; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany., Hause F; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Institute for Molecular Medicine, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany., Iacobucci C; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Department of Physical and Chemical Sciences, University of L'Aquila, 67100 L'Aquila, Italy., Ihling CH; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany., Tänzler D; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany., Shulman N; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States., Riffle M; Department of Biochemistry, University of Washington, Seattle, Washington 98195, United States., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States., Sinz A; Department of Pharmaceutical Chemistry and Bioanalytics, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.; Center for Structural Mass Spectrometry, Martin-Luther-University Halle-Wittenberg, 06120 Halle, Germany.

المصدر: Analytical chemistry [Anal Chem] 2024 May 14; Vol. 96 (19), pp. 7373-7379. Date of Electronic Publication: 2024 May 02.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370536 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-6882 (Electronic) Linking ISSN: 00032700 NLM ISO Abbreviation: Anal Chem Subsets: MEDLINE

مواضيع طبية MeSH: Software* , Mass Spectrometry* , Cross-Linking Reagents*/chemistry , Workflow*, Peptides/chemistry ; Peptides/analysis ; Humans

المؤلفون: Tsantilas KA; Department of Genome Sciences, University of Washington, Washington 98195, United States., Merrihew GE; Department of Genome Sciences, University of Washington, Washington 98195, United States., Robbins JE; Department of Genome Sciences, University of Washington, Washington 98195, United States., Johnson RS; Department of Genome Sciences, University of Washington, Washington 98195, United States., Park J; Department of Genome Sciences, University of Washington, Washington 98195, United States., Plubell DL; Department of Genome Sciences, University of Washington, Washington 98195, United States., Huang E; Department of Genome Sciences, University of Washington, Washington 98195, United States., Riffle M; Department of Biochemistry, University of Washington, Washington 98195, United States., Sharma V; Department of Genome Sciences, University of Washington, Washington 98195, United States., MacLean BX; Department of Genome Sciences, University of Washington, Washington 98195, United States., Eckels J; LabKey, 500 Union St #1000, Seattle, Washington 98101, United States., Wu CC; Department of Genome Sciences, University of Washington, Washington 98195, United States., Bereman MS; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27607., Spencer SE; Canada's Michael Smith Genome Sciences Centre (BC Cancer Research Institute), University of British Columbia, Vancouver, British Columbia V5Z 4S6, Canada., Hoofnagle AN; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington 98195, United States., MacCoss MJ; Department of Genome Sciences, University of Washington, Washington 98195, United States.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2024 Apr 25. Date of Electronic Publication: 2024 Apr 25.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Heil LR; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Damoc E; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Arrey TN; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Pashkova A; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Denisov E; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Petzoldt J; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Peterson AC; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hsu C; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Searle BC; Pelotonia Institute for Immuno-Oncology, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio 43210, United States.; Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, United States., Shulman N; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Riffle M; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Connolly B; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., MacLean BX; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Remes PM; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Senko MW; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Stewart HI; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hock C; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Makarov AA; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hermanson D; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Zabrouskov V; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Wu CC; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., MacCoss MJ; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States.

المصدر: Journal of proteome research [J Proteome Res] 2023 Oct 06; Vol. 22 (10), pp. 3290-3300. Date of Electronic Publication: 2023 Sep 08.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

مواضيع طبية MeSH: Proteomics*/methods , Peptides*, Mass Spectrometry/methods ; Proteome/metabolism ; Blood Proteins

المؤلفون: Heil LR; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Damoc E; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Arrey TN; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Pashkova A; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Denisov E; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Petzoldt J; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Peterson AC; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hsu C; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Searle BC; Pelotonia Institute for Immuno-Oncology, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio 43210, United States.; Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, United States., Shulman N; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Riffle M; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Connolly B; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., MacLean BX; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., Remes PM; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Senko MW; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Stewart HI; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hock C; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Makarov AA; Thermo Fisher Scientific, Hanna-Kunath Ste. 11, 28199 Bremen, Germany., Hermanson D; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Zabrouskov V; Thermo Fisher Scientific, 355 River Oaks Parkway, San Jose, California 95134, United States., Wu CC; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States., MacCoss MJ; Department of Genome Sciences, University of Washington, 3720 15th Street NE, Seattle, Washington 98195, United States.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Aug 07. Date of Electronic Publication: 2023 Aug 07.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Park J; Bertis, Inc., Seoul 06108, Republic of Korea., Wilkins C; Bertis Bioscience, Inc., San Diego, CA 92121, USA., Avtonomov D; Bertis Bioscience, Inc., San Diego, CA 92121, USA., Hong J; Department of Chemistry, Center for Proteogenomic Research, Korea University, Seoul 02841, Republic of Korea., Back S; Department of Chemistry, Center for Proteogenomic Research, Korea University, Seoul 02841, Republic of Korea., Kim H; Department of Chemistry, Center for Proteogenomic Research, Korea University, Seoul 02841, Republic of Korea., Shulman N; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., Lee SW; Department of Chemistry, Center for Proteogenomic Research, Korea University, Seoul 02841, Republic of Korea., Kim S; Bertis Bioscience, Inc., San Diego, CA 92121, USA.

المصدر: Cell reports methods [Cell Rep Methods] 2023 Jul 11; Vol. 3 (7), pp. 100521. Date of Electronic Publication: 2023 Jul 11 (Print Publication: 2023).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 9918227360606676 Publication Model: eCollection Cited Medium: Internet ISSN: 2667-2375 (Electronic) Linking ISSN: 26672375 NLM ISO Abbreviation: Cell Rep Methods Subsets: MEDLINE

مواضيع طبية MeSH: Software* , Proteomics*, Reproducibility of Results ; Mass Spectrometry ; Algorithms

المؤلفون: Kohler D; Khoury College of Computer Science, Northeastern University, Boston, Massachusetts 02115, United States., Staniak M; University of Wrocław, Wrocław 50-137, Poland., Tsai TH; Khoury College of Computer Science, Northeastern University, Boston, Massachusetts 02115, United States., Huang T; Khoury College of Computer Science, Northeastern University, Boston, Massachusetts 02115, United States., Shulman N; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States., Bernhardt OM; Biognosys, Zürich 8952, Switzerland., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States., Nesvizhskii AI; Department of Pathology and Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, United States., Reiter L; Biognosys, Zürich 8952, Switzerland., Sabido E; Center for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona 08003, Spain.; Universitat Pompeu Fabra, Barcelona 08002, Spain., Choi M; Khoury College of Computer Science, Northeastern University, Boston, Massachusetts 02115, United States., Vitek O; Khoury College of Computer Science, Northeastern University, Boston, Massachusetts 02115, United States.

المصدر: Journal of proteome research [J Proteome Res] 2023 May 05; Vol. 22 (5), pp. 1466-1482. Date of Electronic Publication: 2023 Apr 05.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res Subsets: MEDLINE

مواضيع طبية MeSH: Proteomics*/methods , Research Design*, Software ; Mass Spectrometry/methods ; Chromatography, Liquid/methods

المؤلفون: Kirkwood KI; Department of Chemistry, North Carolina State University, Raleigh, NC, USA., Pratt BS; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Shulman N; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Tamura K; Department of Genome Sciences, University of Washington, Seattle, WA, USA., MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle, WA, USA., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Baker ES; Department of Chemistry, North Carolina State University, Raleigh, NC, USA. ebaker@ncsu.edu.; Comparative Medicine Institute, North Carolina State University, Raleigh, NC, USA. ebaker@ncsu.edu.

المصدر: Nature protocols [Nat Protoc] 2022 Nov; Vol. 17 (11), pp. 2415-2430. Date of Electronic Publication: 2022 Jul 13.

نوع المنشور: Journal Article; Review; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

مواضيع طبية MeSH: Ion Mobility Spectrometry* , Lipidomics*, Chromatography, Liquid/methods ; Mass Spectrometry/methods ; Lipids

المؤلفون: Reiter KH; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Zelter A; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Janowska MK; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Riffle M; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Shulman N; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., Tamura K; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., Chambers MC; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., MacCoss MJ; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA., Davis TN; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Guttman M; Department of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA., Brzovic PS; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA., Klevit RE; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA. Electronic address: klevit@uw.edu.

المصدر: Structure (London, England : 1993) [Structure] 2022 Sep 01; Vol. 30 (9), pp. 1269-1284.e6. Date of Electronic Publication: 2022 Jun 17.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101087697 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-4186 (Electronic) Linking ISSN: 09692126 NLM ISO Abbreviation: Structure Subsets: MEDLINE

مواضيع طبية MeSH: Cullin Proteins*/metabolism , Ubiquitin*/metabolism, Catalytic Domain ; Ubiquitin-Protein Ligases/chemistry ; Ubiquitination