المؤلفون: Grubaugh, ND, Saraf, S, Gangavarapu, K, Watts, A, Tan, AL, Oidtman, RJ, Ladner, JT, Oliveira, G, Matteson, NL, Kraemer, MUG, Vogels, CBF, Hentoff, A, Bhatia, D, Stanek, D, Scott, B, Landis, V, Stryker, I, Cone, MR, Kopp, EW, Cannons, AC, Heberlein-Larson, L, White, S, Gillis, LD, Ricciardi, MJ, Kwal, J, Lichtenberger, PK, Magnani, DM, Watkins, DI, Palacios, G, Hamer, DH, Gardner, LM, Perkins, TA, Baele, G, Khan, K, Morrison, A, Isern, S, Michael, SF, Andersen, KG

المصدر: Cell. 178(5):1057

مصطلحات موضوعية: Medicin och hälsovetenskap

URL الوصول: http://kipublications.ki.se/Default.aspx?queryparsed=id:141691028

المؤلفون: Amanda L Tan, Matteson Nl, Glenn Oliveira, Scott F. Michael, Alexander Watts, Davidson H. Hamer, Sharon Isern, Chantal B.F. Vogels, Saraf S, Landis, Nathan D. Grubaugh, Marshall R. Cone, Karthik Gangavarapu, Andrea Morrison, Leah D Gillis, Andrew C. Cannons, Kristian G. Andersen, Diogo M. Magnani, Blake Scott, Rachel J. Oidtman, Danielle Stanek, Jason T. Ladner, Lichtenberger Pk, Jaclyn Kwal, Stryker I, Michael J. Ricciardi, Alex Perkins T, Lea Heberlein-Larson, Kamran Khan, Deepit Bhatia, Moritz U. G. Kraemer, Gustavo Palacios, David I. Watkins, Guy Baele, Stephen White, Aaron Hentoff, Edgar W. Kopp, Lauren Gardner

مصطلحات موضوعية: 0303 health sciences, biology, Transmission (medicine), 030231 tropical medicine, Outbreak, Genomics, biology.organism_classification, 3. Good health, Herd immunity, Zika virus, 03 medical and health sciences, Mosquito control, 0302 clinical medicine, Geography, Public health surveillance, Environmental health, 030304 developmental biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77e0702d21a8a0ed3d024d51f811c4fd
https://doi.org/10.1101/496901

المؤلفون: Matteson NL; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: natem@scripps.edu., Hassler GW; Department of Computational Medicine, University of California, Los Angeles, Los Angeles, CA, USA., Kurzban E; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Schwab MA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Perkins SA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Gangavarapu K; Department of Biomathematics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, Los Angeles, CA, USA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Levy JI; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Parker E; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Pride D; Department of Pathology, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of California, San Diego, La Jolla, CA, USA., Hakim A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., De Hoff P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Cheung W; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Castro-Martinez A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Rivera A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Veder A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Rivera A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Wauer C; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Holmes J; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Wilson J; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ngo SN; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Plascencia A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Lawrence ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Smoot EW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Eisner ER; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Tsai R; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Chacón M; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Baer NA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Seaver P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Salido RA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Aigner S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ngo TT; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Barber T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ostrander T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Fielding-Miller R; Herbert Wertheim School of Public Health and Human Longevity Science, University of California, San Diego, La Jolla, CA, USA; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Simmons EH; Academic Affairs, University of California, San Diego, La Jolla, CA, USA., Zazueta OE; Department of Epidemiology, Secretaria de Salud de Baja California, Tijuana, Baja California, Mexico., Serafin-Higuera I; Centro de Diagnostico COVID-19 UABC, Tijuana, Baja California, Mexico., Sanchez-Alavez M; Centro de Diagnostico COVID-19 UABC, Tijuana, Baja California, Mexico; Department of Molecular Medicine, Scripps Research, La Jolla, CA, USA., Moreno-Camacho JL; Clinical Laboratory Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., García-Gil A; Clinical Laboratory Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Murphy Schafer AR; County of San Diego Health and Human Services Agency, San Diego, CA, USA., McDonald E; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Corrigan J; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Malone JD; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Stous S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Shah S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Moshiri N; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA., Weiss A; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Anderson C; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Aceves CM; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Spencer EG; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Hufbauer EC; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Lee JJ; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., King AJ; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Ramesh KS; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Nguyen KN; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Saucedo K; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Robles-Sikisaka R; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Fisch KM; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Gonias SL; Department of Pathology, University of California, San Diego, La Jolla, CA, USA., Birmingham A; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Karthikeyan S; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Martin NK; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Schooley RT; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Negrete AJ; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Reyna HJ; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Chavez JR; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Garcia ML; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Cornejo-Bravo JM; Facultad de Ciencias Quimicas e Ingenieria, Universidad Autonoma de Baja California, Tijuana, Baja California, Mexico., Becker D; Helix, San Mateo, CA, USA., Isaksson M; Helix, San Mateo, CA, USA., Washington NL; Helix, San Mateo, CA, USA., Lee W; Helix, San Mateo, CA, USA., Garfein RS; Herbert Wertheim School of Public Health and Human Longevity Science, University of California, San Diego, La Jolla, CA, USA., Luna-Ruiz Esparza MA; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Alcántar-Fernández J; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Henson B; Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA, USA., Jepsen K; Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA, USA., Olivares-Flores B; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Barrera-Badillo G; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Lopez-Martínez I; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Ramírez-González JE; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Flores-León R; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Kingsmore SF; Rady Children's Institute for Genomic Medicine, San Diego, CA, USA., Sanders A; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Pradenas A; Return to Learn, University of California, San Diego, La Jolla, CA, USA., White B; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Matthews G; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Hale M; Return to Learn, University of California, San Diego, La Jolla, CA, USA., McLawhon RW; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Reed SL; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Winbush T; Return to Learn, University of California, San Diego, La Jolla, CA, USA., McHardy IH; Scripps Health, La Jolla, San Diego, CA, USA., Fielding RA; Scripps Health, La Jolla, San Diego, CA, USA., Nicholson L; Scripps Health, La Jolla, San Diego, CA, USA., Quigley MM; Scripps Health, La Jolla, San Diego, CA, USA., Harding A; Sharp Healthcare, San Diego, CA, USA., Mendoza A; Sharp Healthcare, San Diego, CA, USA., Bakhtar O; Sharp Healthcare, San Diego, CA, USA., Browne SH; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA; Specialist in Global Health, Encinitas, CA, USA., Olivas Flores J; Facultad de Ciencias Quimicas e Ingenieria, Universidad Autonoma de Baja California, Tijuana, Baja California, Mexico; University of HealthMx, Tijuana, Baja California, Mexico., Rincon Rodríguez DG; University of HealthMx, Tijuana, Baja California, Mexico; Facultad de Medicina, Universidad Xochicalco, Tijuana, Baja California, Mexico., Gonzalez Ibarra M; University of HealthMx, Tijuana, Baja California, Mexico; Facultad de Medicina, Universidad Xochicalco, Tijuana, Baja California, Mexico., Robles Ibarra LC; University of HealthMx, Tijuana, Baja California, Mexico; Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Tijuana, Baja California, Mexico., Arellano Vera BJ; University of HealthMx, Tijuana, Baja California, Mexico; Instituto Mexicano del Seguro Social, Tijuana, Baja California, Mexico., Gonzalez Garcia J; University of HealthMx, Tijuana, Baja California, Mexico; SIMNSA, Tijuana, Baja California, Mexico., Harvey-Vera A; University of California, San Diego, La Jolla, CA, USA., Knight R; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA., Laurent LC; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Yeo GW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Wertheim JO; Department of Medicine, University of California, San Diego, La Jolla, CA, USA., Ji X; Department of Mathematics, School of Science and Engineering, Tulane University, New Orleans, LA, USA., Worobey M; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA., Suchard MA; Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA., Andersen KG; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: andersen@scripps.edu., Campos-Romero A; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Wohl S; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Zeller M; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: zellerm@scripps.edu.

المصدر: Cell [Cell] 2023 Dec 21; Vol. 186 (26), pp. 5690-5704.e20. Date of Electronic Publication: 2023 Dec 14.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , COVID-19*/transmission , COVID-19*/virology, Humans ; Genomics ; Pandemics/prevention & control ; Public Health ; SARS-CoV-2/genetics ; Infection Control ; Geography

المؤلفون: Gangavarapu K; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA. gkarthik@ucla.edu.; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA. gkarthik@ucla.edu., Latif AA; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Mullen JL; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Alkuzweny M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA., Hufbauer E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Tsueng G; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Haag E; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Aceves CM; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Zaiets K; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Cano M; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Zhou X; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Qian Z; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA., Sattler R; Skaggs Graduate School of Biological and Chemical Sciences, The Scripps Research Institute, La Jolla, CA, USA., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Lee RTC; GISAID Global Data Science Initiative, Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore, Singapore., Freitas L; GISAID Global Data Science Initiative, Munich, Germany.; Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, Brazil., Maurer-Stroh S; GISAID Global Data Science Initiative, Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore, Singapore.; National Centre for Infectious Diseases, Ministry of Health, Singapore, Singapore.; Department of Biological Sciences, National University of Singapore, Singapore, Singapore., Suchard MA; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.; Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.; Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA, USA., Wu C; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.; Scripps Research Translational Institute, La Jolla, CA, USA.; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA., Su AI; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.; Scripps Research Translational Institute, La Jolla, CA, USA.; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.; Scripps Research Translational Institute, La Jolla, CA, USA., Hughes LD; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA. lhughes@scripps.edu.

مؤلفون مشاركون: GISAID Core and Curation Team

المصدر: Nature methods [Nat Methods] 2023 Apr; Vol. 20 (4), pp. 512-522. Date of Electronic Publication: 2023 Feb 23.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, P.H.S.; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

مواضيع طبية MeSH: SARS-CoV-2* , COVID-19*, Humans ; Genomics ; Disease Outbreaks ; Mutation

SCR Organism: SARS-CoV-2 variants

المؤلفون: Karthikeyan S; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., De Hoff P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Humphrey G; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Birmingham A; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Jepsen K; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Farmer S; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tubb HM; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Valles T; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tribelhorn CE; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tsai R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Aigner S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Sathe S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Moshiri N; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Henson B; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Mark AM; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Hakim A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Baer NA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Barber T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Belda-Ferre P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Chacón M; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Cheung W; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Cresini ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Eisner ER; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Lastrella AL; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Lawrence ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Marotz CA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Ngo TT; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Ostrander T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Plascencia A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Salido RA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Seaver P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Smoot EW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Neuhard RM; Operational Strategic Initiatives, University of California San Diego, La Jolla, CA, USA.; Return to Learn, University of California San Diego, La Jolla, CA, USA., Scioscia AL; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; Student Health and Well-Being, University of California San Diego, La Jolla, CA, USA., Satterlund AM; Student Affairs, University of California San Diego, La Jolla, CA, USA., Simmons EH; Academic Affairs, University of California San Diego, La Jolla, CA, USA., Abelman DB; Return to Learn, University of California San Diego, La Jolla, CA, USA., Brenner D; Return to Learn, University of California San Diego, La Jolla, CA, USA., Bruner JC; Return to Learn, University of California San Diego, La Jolla, CA, USA., Buckley A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ellison M; Return to Learn, University of California San Diego, La Jolla, CA, USA., Gattas J; Return to Learn, University of California San Diego, La Jolla, CA, USA., Gonias SL; Department of Pathology, University of California San Diego, La Jolla, CA, USA., Hale M; Return to Learn, University of California San Diego, La Jolla, CA, USA., Hawkins F; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ikeda L; Return to Learn, University of California San Diego, La Jolla, CA, USA., Jhaveri H; Return to Learn, University of California San Diego, La Jolla, CA, USA., Johnson T; Return to Learn, University of California San Diego, La Jolla, CA, USA., Kellen V; Return to Learn, University of California San Diego, La Jolla, CA, USA., Kremer B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Matthews G; Return to Learn, University of California San Diego, La Jolla, CA, USA., McLawhon RW; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ouillet P; Return to Learn, University of California San Diego, La Jolla, CA, USA., Park D; Return to Learn, University of California San Diego, La Jolla, CA, USA., Pradenas A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Reed S; Return to Learn, University of California San Diego, La Jolla, CA, USA., Riggs L; Return to Learn, University of California San Diego, La Jolla, CA, USA., Sanders A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Sollenberger B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Song A; Operational Strategic Initiatives, University of California San Diego, La Jolla, CA, USA.; Return to Learn, University of California San Diego, La Jolla, CA, USA., White B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Winbush T; Return to Learn, University of California San Diego, La Jolla, CA, USA., Aceves CM; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Anderson C; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Gangavarapu K; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Hufbauer E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Kurzban E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Lee J; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Parker E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Perkins SA; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Ramesh KS; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Robles-Sikisaka R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Schwab MA; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Spencer E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Wohl S; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Nicholson L; Scripps Health, San Diego, La Jolla, CA, USA., McHardy IH; Scripps Health, San Diego, La Jolla, CA, USA., Dimmock DP; Rady Children's Institute for Genomic Medicine, San Diego, CA, USA., Hobbs CA; Rady Children's Institute for Genomic Medicine, San Diego, CA, USA., Bakhtar O; Sharp Healthcare, San Diego, CA, USA., Harding A; Sharp Healthcare, San Diego, CA, USA., Mendoza A; Sharp Healthcare, San Diego, CA, USA., Bolze A; Helix, San Mateo, CA, USA., Becker D; Helix, San Mateo, CA, USA., Cirulli ET; Helix, San Mateo, CA, USA., Isaksson M; Helix, San Mateo, CA, USA., Schiabor Barrett KM; Helix, San Mateo, CA, USA., Washington NL; Helix, San Mateo, CA, USA., Malone JD; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Schafer AM; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Gurfield N; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Stous S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Fielding-Miller R; Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, La Jolla, CA, USA.; Division of Infectious Disease and Global Public Health, University of California San Diego, La Jolla, CA, USA., Garfein RS; Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, La Jolla, CA, USA., Gaines T; Division of Infectious Disease and Global Public Health, University of California San Diego, La Jolla, CA, USA., Anderson C; Herbert Wertheim School of Public Health and Human Longevity Science, University of California San Diego, La Jolla, CA, USA., Martin NK; Division of Infectious Disease and Global Public Health, University of California San Diego, La Jolla, CA, USA., Schooley R; Division of Infectious Disease and Global Public Health, University of California San Diego, La Jolla, CA, USA., Austin B; Sharp Healthcare, San Diego, CA, USA., MacCannell DR; Office of Advanced Molecular Detection, Centers for Disease Control and Prevention, Atlanta, GA, USA., Kingsmore SF; Rady Children's Institute for Genomic Medicine, San Diego, CA, USA., Lee W; Helix, San Mateo, CA, USA., Shah S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., McDonald E; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Yu AT; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Fisch KM; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Longhurst C; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Biomedical Informatics, University of California San Diego, La Jolla, CA, USA., Maysent P; Office of the UC San Diego Health CEO, University of California San Diego, La Jolla, CA, USA., Pride D; Department of Pathology, University of California San Diego, La Jolla, CA, USA.; Department of Medicine, University of California San Diego, La Jolla, CA, USA., Khosla PK; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Laurent LC; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA, USA., Yeo GW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Sanford Consortium of Regenerative Medicine, University of California San Diego, La Jolla, CA, USA.; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.

المصدر: Nature [Nature] 2022 Sep; Vol. 609 (7925), pp. 101-108. Date of Electronic Publication: 2022 Jul 07.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , COVID-19*/transmission , COVID-19*/virology , SARS-CoV-2*/classification , SARS-CoV-2*/genetics , SARS-CoV-2*/isolation & purification , Wastewater*/virology , Wastewater-Based Epidemiological Monitoring*, Humans ; RNA, Viral/analysis ; RNA, Viral/genetics ; Sequence Analysis, RNA

SCR Organism: SARS-CoV-2 variants

المؤلفون: Pekar JE; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA.; Department of Biomedical Informatics, University of California, San Diego, La Jolla, CA 92093, USA., Magee A; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA., Parker E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Moshiri N; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA 92093, USA., Izhikevich K; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA 92093, USA.; Department of Mathematics, University of California, San Diego, La Jolla, CA 92093, USA., Havens JL; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA 92093, USA., Gangavarapu K; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA., Malpica Serrano LM; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA., Crits-Christoph A; W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Wang JC; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, NY 11101, USA., Hughes S; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, NY 11101, USA., Lee J; Department of Microbiology, Institute for Viral Diseases, Biosafety Center, College of Medicine, Korea University, Seoul, South Korea., Park H; Department of Microbiology, Institute for Viral Diseases, Biosafety Center, College of Medicine, Korea University, Seoul, South Korea.; BK21 Graduate Program, Department of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Republic of Korea., Park MS; Department of Microbiology, Institute for Viral Diseases, Biosafety Center, College of Medicine, Korea University, Seoul, South Korea.; BK21 Graduate Program, Department of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Republic of Korea., Ching Zi Yan K; National Public Health Laboratory, National Centre for Infectious Diseases, Singapore., Lin RTP; National Public Health Laboratory, National Centre for Infectious Diseases, Singapore., Mat Isa MN; Malaysia Genome and Vaccine Institute, Jalan Bangi, 43000 Kajang, Selangor, Malaysia., Noor YM; Malaysia Genome and Vaccine Institute, Jalan Bangi, 43000 Kajang, Selangor, Malaysia., Vasylyeva TI; Department of Medicine, University of California, San Diego, La Jolla, CA 92093, USA., Garry RF; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA.; Zalgen Labs, Frederick, MD 21703, USA.; Global Virus Network (GVN), Baltimore, MD 21201, USA., Holmes EC; Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia., Rambaut A; Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Edinburgh EH9 3FL, UK., Suchard MA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.; Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.; Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA 90095, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Worobey M; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA., Wertheim JO; Department of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.

المصدر: Science (New York, N.Y.) [Science] 2022 Aug 26; Vol. 377 (6609), pp. 960-966. Date of Electronic Publication: 2022 Jul 26.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , COVID-19*/transmission , COVID-19*/virology , Pandemics* , SARS-CoV-2*/classification , SARS-CoV-2*/genetics , SARS-CoV-2*/isolation & purification , Viral Zoonoses*/epidemiology , Viral Zoonoses*/virology, Animals ; Computer Simulation ; Genetic Variation ; Genomics/methods ; Humans ; Molecular Epidemiology ; Phylogeny

المؤلفون: Parker E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA. eparker@scripps.edu., Anderson C; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Tibi A; Biolab Diagnostic Laboratories, Amman, Jordan., Havens JL; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA., Laroche G; Department of Biochemistry, Microbiology and Immunology, and Center for Infection, Immunity, and Inflammation, University of Ottawa, Ottawa, ON, Canada., Benlarbi M; Department of Biochemistry, Microbiology and Immunology, and Center for Infection, Immunity, and Inflammation, University of Ottawa, Ottawa, ON, Canada., Ariana A; Department of Biochemistry, Microbiology and Immunology, and Center for Infection, Immunity, and Inflammation, University of Ottawa, Ottawa, ON, Canada., Robles-Sikisaka R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Latif AA; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Watts A; Bluedot, Toronto, ON, Canada., Awidi A; Cell Therapy Center, The University of Jordan, Amman, Jordan.; Thrombosis, haemostasis laboratory, School of Medicine, The University of Jordan, Amman, Jordan., Jaradat SA; Princess Haya Biotechnology Center, Jordan University of Science and Technology, Irbid, Jordan., Gangavarapu K; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA., Ramesh K; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Kurzban E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Han AX; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC, University of Amsterdam, Amsterdam Institute for Infection and Immunity, Amsterdam, the Netherlands., Hughes LD; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA., McGraw M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Spencer E; Scripps Research Translational Institute, La Jolla, CA, USA., Nicholson L; Scripps Research Translational Institute, La Jolla, CA, USA., Khan K; Bluedot, Toronto, ON, Canada., Suchard MA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.; Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA., Wertheim JO; Department of Medicine, University of California San Diego, La Jolla, CA, USA., Wohl S; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Côté M; Department of Biochemistry, Microbiology and Immunology, and Center for Infection, Immunity, and Inflammation, University of Ottawa, Ottawa, ON, Canada., Abdelnour A; Biolab Diagnostic Laboratories, Amman, Jordan., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Abu-Dayyeh I; Biolab Diagnostic Laboratories, Amman, Jordan. i.abudayyeh@biolab.jo.; Cell Therapy Center, The University of Jordan, Amman, Jordan. i.abudayyeh@biolab.jo.

المصدر: Nature communications [Nat Commun] 2022 Aug 15; Vol. 13 (1), pp. 4784. Date of Electronic Publication: 2022 Aug 15.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , SARS-CoV-2*, Humans ; Middle East/epidemiology ; Pandemics/prevention & control ; Travel

المؤلفون: Gangavarapu K; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA., Latif AA; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Mullen JL; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Alkuzweny M; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA., Hufbauer E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Tsueng G; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Haag E; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Aceves CM; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Zaiets K; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Cano M; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Zhou J; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Qian Z; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Sattler R; Skaggs Graduate School of Biological and Chemical Sciences, The Scripps Research Institute, La Jolla, CA 92037, USA., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Lee RT; GISAID Global Data Science Initiative (GISAID), Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore., Freitas L; GISAID Global Data Science Initiative (GISAID), Munich, Germany.; Oswaldo Cruz Foundation (FIOCRUZ), Rio de Janeiro, Brazil., Maurer-Stroh S; GISAID Global Data Science Initiative (GISAID), Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore.; National Centre for Infectious Diseases, Ministry of Health, Singapore.; Department of Biological Sciences, National University of Singapore, Singapore., Suchard MA; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.; Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.; Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA 90095, USA., Wu C; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Scripps Research Translational Institute, La Jolla, CA 92037, USA.; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA., Su AI; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Scripps Research Translational Institute, La Jolla, CA 92037, USA.; Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Hughes LD; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

مؤلفون مشاركون: GISAID core and curation team

المصدر: Research square [Res Sq] 2022 Jun 28. Date of Electronic Publication: 2022 Jun 28.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

المؤلفون: Karthikeyan S; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., De Hoff P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Humphrey G; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Birmingham A; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Jepsen K; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Farmer S; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tubb HM; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Valles T; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tribelhorn CE; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Tsai R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Aigner S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Sathe S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Moshiri N; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Henson B; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Mark AM; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Hakim A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Baer NA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Barber T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Belda-Ferre P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Chacón M; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Cheung W; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA.; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Cresini ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Eisner ER; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Lastrella AL; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Lawrence ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Marotz CA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Ngo TT; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Ostrander T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Plascencia A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Salido RA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Seaver P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Smoot EW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Neuhard RM; Operational Strategic Initiatives, University of California San Diego, La Jolla, CA, USA.; Return to Learn, University of California San Diego, La Jolla, CA, USA., Scioscia AL; Student Health and Well-Being, University of California San Diego, La Jolla, CA, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California San Diego, La Jolla, CA, USA., Satterlund AM; Student Affairs, University of California San Diego, La Jolla, CA, USA., Simmons EH; Academic Affairs, University of California San Diego, La Jolla, CA, USA., Abelman DB; Return to Learn, University of California San Diego, La Jolla, CA, USA., Brenner D; Return to Learn, University of California San Diego, La Jolla, CA, USA., Bruner JC; Return to Learn, University of California San Diego, La Jolla, CA, USA., Buckley A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ellison M; Return to Learn, University of California San Diego, La Jolla, CA, USA., Gattas J; Return to Learn, University of California San Diego, La Jolla, CA, USA., Gonias SL; Department of Pathology, University of California San Diego, La Jolla, CA, USA., Hale M; Return to Learn, University of California San Diego, La Jolla, CA, USA., Hawkins F; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ikeda L; Return to Learn, University of California San Diego, La Jolla, CA, USA., Jhaveri H; Return to Learn, University of California San Diego, La Jolla, CA, USA., Johnson T; Return to Learn, University of California San Diego, La Jolla, CA, USA., Kellen V; Return to Learn, University of California San Diego, La Jolla, CA, USA., Kremer B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Matthews G; Return to Learn, University of California San Diego, La Jolla, CA, USA., McLawhon RW; Return to Learn, University of California San Diego, La Jolla, CA, USA., Ouillet P; Return to Learn, University of California San Diego, La Jolla, CA, USA., Park D; Return to Learn, University of California San Diego, La Jolla, CA, USA., Pradenas A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Reed S; Return to Learn, University of California San Diego, La Jolla, CA, USA., Riggs L; Return to Learn, University of California San Diego, La Jolla, CA, USA., Sanders A; Return to Learn, University of California San Diego, La Jolla, CA, USA., Sollenberger B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Song A; Operational Strategic Initiatives, University of California San Diego, La Jolla, CA, USA.; Return to Learn, University of California San Diego, La Jolla, CA, USA., White B; Return to Learn, University of California San Diego, La Jolla, CA, USA., Winbush T; Return to Learn, University of California San Diego, La Jolla, CA, USA., Aceves CM; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA., Anderson C; 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المصدر: MedRxiv : the preprint server for health sciences [medRxiv] 2022 Apr 04. Date of Electronic Publication: 2022 Apr 04.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

المؤلفون: Zeller M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: zellerm@scripps.edu., Gangavarapu K; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: gkarthik@scripps.edu., Anderson C; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Smither AR; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Vanchiere JA; Department of Pediatrics, Louisiana State University Health Sciences Center - Shreveport, Shreveport, LA 71130, USA., Rose R; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Snyder DJ; Department of Microbiology and Molecular Genetics, University of Pittsburgh, School of Medicine, Pittsburgh, PA 15219, USA; Center for Evolutionary Biology and Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA., Dudas G; Gothenburg Global Biodiversity Centre (GGBC), Gothenburg, Sweden., Watts A; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada; Bluedot, Toronto, Canada., Matteson NL; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Robles-Sikisaka R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Marshall M; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, MD, USA., Feehan AK; Ochsner Clinic Foundation, New Orleans, Louisiana, USA., Sabino-Santos G Jr; Department of Tropical Medicine, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA 70112, USA; Centre for Virology Research, Ribeirão Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP 14049900, Brazil., Bell-Kareem AR; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Hughes LD; Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Alkuzweny M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Snarski P; Heart and Vascular Institute, John W. Deming Department of Medicine, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Physiology, Tulane University School of Medicine, New Orleans, LA 70112, USA., Garcia-Diaz J; Ochsner Clinic Foundation, New Orleans, Louisiana, USA., Scott RS; Department of Microbiology and Immunology, Louisiana State University Health Science Center Shreveport, Shreveport, LA 71103, USA., Melnik LI; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA., Klitting R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., McGraw M; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Belda-Ferre P; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA., DeHoff P; Department of Obstetrics, Gynecology, and Reproductive Science, University of California, San Diego, La Jolla, CA 92037, USA., Sathe S; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Nolan DJ; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Drouin AC; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Physiology, Tulane University School of Medicine, New Orleans, LA 70112, USA., Genemaras KJ; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Bioinnovation Program, Tulane University, New Orleans, LA 70118, USA., Chao K; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Bioinnovation Program, Tulane University, New Orleans, LA 70118, USA., Topol S; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Spencer E; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Nicholson L; Scripps Research Translational Institute, La Jolla, CA 92037, USA., Aigner S; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA; Institute for Genomic Medicine, University of California, San Diego, La Jolla, California, USA., Yeo GW; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA; Stem Cell Program, University of California San Diego, La Jolla, CA 92093, USA; Institute for Genomic Medicine, University of California, San Diego, La Jolla, California, USA., Farnaes L; Rady Children's Institute for Genomic Medicine, San Diego, CA 92123, USA; Rady Children's Hospital, San Diego, CA 92123, USA., Hobbs CA; Rady Children's Institute for Genomic Medicine, San Diego, CA 92123, USA; Rady Children's Hospital, San Diego, CA 92123, USA., Laurent LC; Department of Obstetrics, Gynecology, and Reproductive Science, University of California, San Diego, La Jolla, CA 92037, USA., Knight R; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, California, USA; Department of Bioengineering, University of California San Diego, La Jolla, California, USA., Hodcroft EB; Biozentrum, University of Basel, Basel, Switzerland., Khan K; Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Canada; Bluedot, Toronto, Canada; Department of Medicine, University of Toronto, Toronto, Canada., Fusco DN; Department of Tropical Medicine, School of Public Health and Tropical Medicine, Tulane University, New Orleans, LA 70112, USA; Department of Medicine, Tulane University School of Medicine, 1430 Tulane Avenue, New Orleans, LA 70114, USA., Cooper VS; Department of Microbiology and Molecular Genetics, University of Pittsburgh, School of Medicine, Pittsburgh, PA 15219, USA; Center for Evolutionary Biology and Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Belgium; Global Virology Network., Gardner L; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, MD, USA., Lamers SL; BioInfoExperts LLC, Thibodaux, Louisiana, USA., Kamil JP; Department of Microbiology and Immunology, Louisiana State University Health Science Center Shreveport, Shreveport, LA 71103, USA., Garry RF; Department of Microbiology and Immunology, School of Medicine, Tulane University, New Orleans, LA 70112, USA; Zalgen Labs LLC, Germantown, MD, USA., Suchard MA; Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA; Scripps Research Translational Institute, La Jolla, CA 92037, USA. Electronic address: andersen@scripps.edu.

المصدر: Cell [Cell] 2021 Sep 16; Vol. 184 (19), pp. 4939-4952.e15. Date of Electronic Publication: 2021 Jul 27.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

مواضيع طبية MeSH: Epidemics*, COVID-19/*epidemiology , SARS-CoV-2/*physiology, COVID-19/transmission ; Databases as Topic ; Disease Outbreaks ; Humans ; Louisiana/epidemiology ; Phylogeny ; Risk Factors ; SARS-CoV-2/classification ; Texas ; Travel ; United States/epidemiology