المؤلفون: Mitrick A. Johns, Ping Yao, Angela Antonou, Minmei Hou

المصدر: Bioinformatics. 27:3266-3275

مصطلحات موضوعية: Statistics and Probability, Genetics, Genome, Pan troglodytes, business.industry, Software tool, Genome browser, Computational biology, Biology, Original Papers, Biochemistry, Computer Science Applications, Evolution, Molecular, Computational Mathematics, Software, Computational Theory and Mathematics, Likelihood-ratio test, Chromosome Inversion, Animals, Humans, business, Sequence Alignment, Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::abd68ac52d6746c0f78f6a2f5010e54a
https://doi.org/10.1093/bioinformatics/btr566

المؤلفون: Li Sheng, Jian Shen, Webb Miller, Louxin Zhang, Minmei Hou, C. Thach Nguyen

المصدر: SIAM Journal on Computing. 38:946-962

مصطلحات موضوعية: Polynomial (hyperelastic model), Discrete mathematics, General Computer Science, General Mathematics, Approximation algorithm, Star (graph theory), Planar graph, Combinatorics, Tree (descriptive set theory), symbols.namesake, Dominating set, Algorithmics, symbols, Time complexity, Mathematics

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::f93ca9c75e088e73226420247cb3d551
https://doi.org/10.1137/070682150

المؤلفون: Ross C. Hardison, Kate R. Rosenbloom, Brian J. Raney, Thomas H. Pringle, Sergei L. Kosakovsky Pond, Minmei Hou, Adam Siepel, Richard Burhans, Arthur M. Lesk, Robert Baertsch, Robert S. Harris, George M. Weinstock, Belinda Giardine, Webb Miller, Mark Diekhans, David C. King, Richard A. Gibbs, W. James Kent, Svitlana Tyekucheva, Anton Nekrutenko, David Haussler, James Taylor, William J. Murphy, Eric S. Lander, Kerstin Lindblad-Toh, Daniel Blankenberg

المصدر: Genome Research. 17:1797-1808

مصطلحات موضوعية: Resource, Guinea Pigs, Molecular Sequence Data, Codon, Initiator, Sequence alignment, Genome browser, Biology, Genome, Conserved sequence, Mice, Dogs, Databases, Genetic, Genetics, Animals, Humans, Coding region, natural sciences, Indel, Conserved Sequence, Genetics (clinical), Sequence Deletion, Base Sequence, Genome, Human, Stop codon, Rats, Mutagenesis, Insertional, Evolutionary biology, Cats, Codon, Terminator, Cattle, Human genome, Rabbits, Sequence Alignment

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9bee35a76131da488679bc59670eac41
https://doi.org/10.1101/gr.6761107

المؤلفون: Inna Dubchak, Aaron E. Darling, Brian J. Raney, Glenn Hickey, Cedric Notredame, W. J. Kent, Vladimir Molodtsov, Dent Earl, David Haussler, Benedict Paten, Stephen Fitzgerald, Carsten Kemena, Jian Ma, Ngan Nguyen, Minmei Hou, Michael Brudno, Ionas Erb, Victor V. Solovyev, Kathryn Beal, Alexander Poliakov, Hiram Clawson, Robert S. Harris, Jia-Ming Chang, Igor Seledtsov, Jaebum Kim, Javier Herrero

المصدر: Genome research, vol 24, iss 12

مصطلحات موضوعية: Resource, Bioinformatics, media_common.quotation_subject, Datasets as Topic, Genomics, Sequence alignment, Biology, Machine learning, computer.software_genre, Medical and Health Sciences, Software, Resource (project management), Genetics, Animals, Humans, Quality (business), Computer Simulation, Genetics (clinical), Phylogeny, media_common, Mammals, Multiple sequence alignment, Genome, business.industry, Reproducibility of Results, Computational Biology, Benchmarking, Biological Sciences, Artificial intelligence, business, computer, Sequence Alignment, Genome-Wide Association Study

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f5a81bc4be966d031c0ce170a6e350e2
https://escholarship.org/uc/item/0s01d2gw

المؤلفون: Kate R. Rosenbloom, LaDeana W. Hillier, John Spieth, David Haussler, Jakob Skou Pedersen, George M. Weinstock, Richard A. Gibbs, W. James Kent, Richard K. Wilson, Adam Siepel, Webb Miller, Gill Bejerano, Minmei Hou, Stephen Richards, Hiram Clawson, Angie S. Hinrichs

المصدر: Siepel, A, Bejerano, G, Pedersen, J S, Hinrichs, A S, Hou, M, Rosenbloom, K, Clawson, H, Spieth, J, Hillier, L W, Richards, S, Weinstock, G M, Wilson, R K, Gibbs, R A, Kent, W J, Miller, W & Haussler, D 2005, ' Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes ', Genome Research, vol. 15, no. 8, pp. 1034-50 . https://doi.org/10.1101/gr.3715005

مصطلحات موضوعية: Insecta, Molecular Sequence Data, Biology, Human accelerated regions, Genome, Conserved non-coding sequence, Conserved sequence, Evolution, Molecular, Saccharomyces, Yeasts, Genetics, Animals, Humans, Caenorhabditis elegans, 3' Untranslated Regions, Base Pairing, Genome size, Conserved Sequence, Genetics (clinical), Base Sequence, Phylogenetic tree, Articles, biology.organism_classification, Insects, Caenorhabditis, Evolutionary biology, Vertebrates, DNA, Intergenic, Human genome

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74697ed4e2159978bd331ff436b83014
https://doi.org/10.1101/gr.3715005

المؤلفون: Minmei Hou, Robert S. Harris, Louxin Zhang

المصدر: BCB

مصطلحات موضوعية: Set (abstract data type), Similarity (geometry), food and beverages, Pairwise comparison, Seeding, Sensitivity (control systems), Biology, Base (topology), Transversion, Algorithm, Simulation, Selection (genetic algorithm)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::30bb9d45664f9875222fa73d2a003e16
https://doi.org/10.1145/2382936.2382985

المؤلفون: Webb Miller, Piotr Berman, Minmei Hou, Cathy Riemer, Ross C. Hardison

المصدر: Comparative Genomics ISBN: 9783642047435
RECOMB-CG

مصطلحات موضوعية: Genetics, Gene cluster, Protein pair, Gene duplication, Pairwise alignment, Computational biology, Biology, Gene, Selection (genetic algorithm), Event (probability theory)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::95c7d5cca07832e1d053f7fca630b77e
https://doi.org/10.1007/978-3-642-04744-2_9

المؤلفون: Nan Jiang, Alfonso Valencia, Rachel A. Harte, Abigail Woodroffe, Michael Seringhaus, Andrew Haydock, Eugene Davydov, Todd M. Lowe, Peggy J. Farnham, Robert E. Thurman, Tyler Alioto, Adam Ameur, Morgan Park, Roderic Guigó, Archana Thakkapallayil, Philipp Kapranov, Francis S. Collins, Donna Karolchik, Stefan Washietl, Kerstin Lindblad-Toh, Michael L. Tress, Barbara E. Stranger, Gregory M. Cooper, Kun Wang, Thomas R. Gingeras, Serafim Batzoglou, Peter D. Ellis, Annie Yang, Stylianos E. Antonarakis, Jonghwan Kim, Robert M. Andrews, W. James Kent, Kuo Ping Chiu, Madhavan Ganesh, Jason D. Lieb, Shane Neph, Albin Sandelin, Michael Hawrylycz, Eric S. Lander, Matthew T. Weirauch, Nick Goldman, Alexander E. Urban, Ian Bell, Anason S. Halees, Jan Komorowski, Webb Miller, Kandhadayar G. Srinivasan, Evelyn Cheung, David B. Jaffe, Peter J. Good, Gregory Lefebvre, Yuko Yoshinaga, Sylvain Foissac, Alexander W. Bruce, Mark Dickson, Christoph M. Koch, Antigone S. Dimas, Zhengdong D. Zhang, Matthew J. Oberley, Paul I.W. de Bakker, Arend Sidow, Xueqing Zhang, Molly Weaver, Jane Rogers, Jacquelyn R. Idol, Jeff Goldy, Haiyan Huang, William Stafford Noble, Angie S. Hinrichs, Sandeep Patel, David A. Nix, Lluís Armengol, Siew Woh Choo, Hong Sain Ooi, Sara Van Calcar, Ivan Adzhubei, Job Dekker, Sara J. Cooper, Hari Tammana, Valerie Maduro, Jason A. Greenbaum, Bing Ren, Sharon L. Squazzo, Jennifer C. McDowell, Chikatoshi Kai, Ivo L. Hofacker, Ian Dunham, Peter J. Bickel, Nancy Holroyd, Eduardo Eyras, Julien Lagarde, Fei Yao, Man Yu, Piero Carninci, Chia-Lin Wei, Alice C. Young, Yong Yu, Daryl J. Thomas, George Asimenos, Xiaoqin Xu, Galt P. Barber, Andrea Tanzer, Juan I. Montoya-Burgos, Sujit Dike, Nathan Day, Gregory E. Crawford, Michele Clamp, Todd Richmond, Nuria Lopez-Bigas, Vishwanath R. Iyer, Ewan Birney, Richard Humbert, Gary C. Hon, David Swarbreck, Xiaobin Guan, Sarah Wilcox, Nate Heintzman, Josep F. Abril, Elaine R. Mardis, Stefan Enroth, Charlie W.H. Lee, Nicholas Matthews, Benedict Paten, Robert Castelo, Michael A. Singer, Mousheng Xu, Chiou Yu Choo, Nancy F. Hansen, Elizabeth Rosenzweig, Patrick A. Navas, Jacqueline Chrast, Brett E. Johnson, Jan O. Korbel, Simon Whelan, Stephen Hartman, Ulas Karaoz, Ingileif B. Hallgrímsdóttir, David Haussler, Michael R. Brent, Jill Cheng, Gonçalo R. Abecasis, Ann S. Zweig, Sherman M. Weissman, Michael O. Dorschner, Jin Lian, Vinsensius B. Vega, Cordelia Langford, Alexandre Reymond, Mark Gerstein, Pawandeep Dhami, Ola Wallerman, Huaiyang Jiang, Lior Pachter, James Taylor, Eric A. Stone, David R. Inman, Yijun Ruan, Peter E. Newburger, Roland Green, Ari Löytynoja, Shelley Force Aldred, Alvaro Rada-Iglesias, Baishali Maskeri, Joel Rozowsky, Jorg Drenkow, Colin N. Dewey, Srinka Ghosh, Yutao Fu, Kayla E. Smith, Xavier Estivill, Donna M. Muzny, Christine P. Bird, Tim Hubbard, Jana Hertel, Kristin Missal, Neerja Karnani, Ericka M. Johnson, Nan Zhang, Zhou Zhu, Stephen C. J. Parker, Minmei Hou, Charlotte N. Henrichsen, Heather A. Hirsch, Caroline Manzano, Laura A. Liefer, Kim C. Worley, Robert Baertsch, Mark S. Guyer, Ross C. Hardison, Zheng Lian, Hiram Clawson, Leah O. Barrera, Manja Lindemeyer, James Cuff, Chunxu Qu, Jun Kawai, Jennifer Hillman-Jackson, Eric D. Green, Robert W. Blakesley, Abel Ureta-Vidal, Rhona K. Stuart, Fabio Pardi, Peter J. Sabo, Edward A. Sekinger, John S. Mattick, Ankit Malhotra, Taane G. Clark, James G. R. Gilbert, James C. Mullikin, Deyou Zheng, Robert M. Kuhn, Tae Hoon Kim, M. Geoff Rosenfeld, Kirsten Lee, Jörg Hackermüller, Oliver M. Dovey, Deanna M. Church, Kyle J. Munn, Peter F. Stadler, Phillippe Couttet, Claudia Fried, Jaafar N. Haidar, Kris A. Wetterstrand, Wing-Kin Sung, Paul G. Giresi, Jia Qian Wu, Ruth Taylor, David A. Wheeler, Zarmik Moqtaderi, Adam Siepel, Michael Snyder, Ian Holmes, Jun Liu, Olof Emanuelsson, Kevin Struhl, Saurabh Asthana, Akshay Bhinge, Adam Frankish, Yoshihide Hayashizaki, Ghia Euskirchen, Joel D. Martin, Robert S. Fulton, Ugrappa Nagalakshmi, Heike Fiegler, Gayle K. Clelland, Shane C. Dillon, Fidencio Neri, Elliott H. Margulies, Sean Davis, Mark Bieda, Tristan Frum, Michael S. Kuehn, Heather Trumbower, Pamela J. Thomas, Kazutoyo Osoegawa, Richard A. Gibbs, Emmanouil T. Dermitzakis, Julian L. Huppert, Richard K. Wilson, Tina Graves, Zhiping Weng, Anthony Shafer, Baoli Zhu, Christopher K. Glass, Patrick J. Boyle, Hennady P. Shulha, Maxim Koriabine, Christoph Flamm, David Vetrie, Nigel P. Carter, Patrick Ng, Peter Kraus, John A. Stamatoyannopoulos, George M. Weinstock, Tim Massingham, Jane M. Lin, Damian Keefe, Jean L. Chang, Shamil R. Sunyaev, Sergey Nikolaev, Kate R. Rosenbloom, Carine Wyss, Hua Cao, Keith D. James, Michael C. Zody, Gerard G. Bouffard, Atif Shahab, Nathan D. Trinklein, James B. Brown, Erica Sodergren, Xiaodong Zhao, Rosa Luna, Sante Gnerre, Paul Flicek, Joanna C. Fowler, Andrew D. Kern, Jakob Skou Pedersen, David C. King, Anindya Dutta, Elise A. Feingold, Richard M. Myers, Richard Sandstrom, Catherine Ucla, Thomas D. Tullius, Mikhail Nefedov, Claes Wadelius, Jennifer Harrow, Christopher M. Taylor, Xiaoling Zhang, Pieter J. de Jong

المساهمون: Dermitzakis, Emmanouil, Reymond, Alexandre

المصدر: Nature, Vol. 447, No 7146 (2007) pp. 799-816
Birney, E, Stamatoyannopoulos, J A, Dutta, A, Guigó, R, Gingeras, T R, Margulies, E H, Weng, Z, Snyder, M, Dermitzakis, E T, Thurman, R E, Kuehn, M S, Taylor, C M, Neph, S, Koch, C M, Asthana, S, Malhotra, A, Adzhubei, I, Greenbaum, J A, Andrews, R M, Flicek, P, Boyle, P J, Cao, H, Carter, N P, Clelland, G K, Davis, S, Day, N, Dhami, P, Dillon, S C, Dorschner, M O, Fiegler, H, Giresi, P G, Goldy, J, Hawrylycz, M, Haydock, A, Humbert, R, James, K D, Johnson, B E, Johnson, E M, Frum, T T, Rosenzweig, E R, Karnani, N, Lee, K, Lefebvre, G C, Navas, P A, Neri, F, Parker, S C J, Sabo, P J, Sandstrom, R, Shafer, A, Pedersen, J S & ENCODE Project Consortium 2007, ' Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ', Nature, vol. 447, no. 7146, pp. 799-816 . https://doi.org/10.1038/nature05874

مصطلحات موضوعية: DNA Replication, RNA, Messenger/genetics, Chromatin Immunoprecipitation, Heterozygote, RNA, Untranslated, Transcription, Genetic, Systems biology, Histones/metabolism, RNA, Untranslated/genetics, Pilot Projects, Genomics, Computational biology, Regulatory Sequences, Nucleic Acid, Biology, ENCODE, Genome, Article, DNase-Seq, Histones, Evolution, Molecular, Exons/genetics, Humans, ddc:576.5, Transcription Factors/metabolism, RNA, Messenger, Conserved Sequence, Chromatin/genetics/metabolism, Genetics, Transcription, Genetic/ genetics, Multidisciplinary, Genome, Human, GENCODE, Genetic Variation, Exons, Chromatin, Genetic Variation/genetics, Regulatory Sequences, Nucleic Acid/ genetics, Human genome, Conserved Sequence/genetics, Transcription Initiation Site, Functional genomics, Genome, Human/ genetics, Transcription Factors, Protein Binding

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cad7d3cc6b84a6569cb6ed707e357d08
https://resolver.caltech.edu/CaltechAUTHORS:20170307-121815071

المؤلفون: James Cuff, Nancy F. Hansen, Rachel A. Harte, Jean L. Chang, Abel Ureta-Vidal, Fabio Pardi, Michele Clamp, Xiaobin Guan, Erica Sodergren, Richard A. Moore, Alice C. Young, Huaiyang Jiang, Kim C. Worley, Sante Gnerre, Adam Siepel, Eric A. Stone, Ann S. Zweig, Peter J. Bickel, Donna M. Muzny, Eric D. Green, Simon Whelan, Jacquelyn R. Idol, Ariel S. Schwartz, Robert W. Blakesley, Ross C. Hardison, Arend Sidow, Robert M. Kuhn, Donna Karolchik, Elaine R. Mardis, Ian Holmes, Daryl J. Thomas, James C. Mullikin, George Asimenos, Robert S. Fulton, Galt P. Barber, Elliott H. Margulies, Webb Miller, Ewan Birney, Jacqueline E. Schein, Lior Pachter, Ari Löytynoja, Minmei Hou, Serafim Batzoglou, Gregory M. Cooper, Eric S. Lander, Nick Goldman, Baishali Maskeri, George M. Weinstock, Hiram Clawson, Matthew A. Field, Tim Massingham, Damian Keefe, Heather Trumbower, David B. Jaffe, Tina Graves, David Haussler, Valerie Maduro, Richard A. Gibbs, Richard K. Wilson, Stylianos E. Antonarakis, Carrie A. Matthewson, W. James Kent, Morgan Park, David A. Wheeler, Kerstin Lindblad-Toh, Sergey Nikolaev, Kate R. Rosenbloom, Gerard G. Bouffard, Angie S. Hinrichs, James B. Brown, Marco A. Marra, Benedict Paten, Colin N. Dewey, Jennifer C. McDowell, Juan I. Montoya-Burgos, Pamela J. Thomas, James Taylor

المساهمون: Montoya Burgos, Juan Ignacio, Antonarakis, Stylianos

المصدر: Genome Research, Vol. 17, No 6 (2007) pp. 760-774

مصطلحات موضوعية: Genetics, Mammals, ddc:616, Genome, Human, Sequence alignment, Computational biology, Biology, ENCODE, Genome, Article, Constraint (information theory), Evolution, Molecular, Consistency (database systems), Open Reading Frames, Phylogenetics, Human Genome Project, Animals, Humans, Human genome, Mammals/ genetics, Sequence Alignment, Genetics (clinical), Phylogeny, Sequence (medicine)

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::70d4e1666146c03b71facff88494670b
https://resolver.caltech.edu/CaltechAUTHORS:20170307-125526948

المؤلفون: Robert S. Harris, Piotr Berman, Chih Hao Hsu, Minmei Hou

المصدر: Bioinformatics (Oxford, England). 23(8)

مصطلحات موضوعية: Statistics and Probability, Sequence analysis, Interspersed repeat, Molecular Sequence Data, Computational biology, Biology, Biochemistry, Genome, Tandem repeat, Sequence Homology, Nucleic Acid, Gene cluster, Direct repeat, Molecular Biology, Segmental duplication, Repetitive Sequences, Nucleic Acid, Genetics, Base Sequence, Chromosome Mapping, Sequence Analysis, DNA, Computer Science Applications, Computational Mathematics, Variable number tandem repeat, Computational Theory and Mathematics, Sequence Alignment, Algorithms, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::caef02485e6e34a7814a9384d63669ec
https://pubmed.ncbi.nlm.nih.gov/17308341