المؤلفون: Erfan Sadeqi Azer, Mohammad Haghir Ebrahimabadi, Salem Malikić, Roni Khardon, S. Cenk Sahinalp

المصدر: iScience, Vol 23, Iss 11, Pp 101655- (2020)

مصطلحات موضوعية: Bioinformatics, Phylogenetics, Cancer, Science

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004220308476; https://doaj.org/toc/2589-0042

URL الوصول: https://doaj.org/article/e0e43459ef574022aae07952e745801f

المؤلفون: Salem Malikic, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, S. Cenk Sahinalp, Mohammad Haghir Ebrahimabadi

المصدر: J Comput Biol

مصطلحات موضوعية: Theoretical computer science, Computer science, Binary number, Computational biology, Space (mathematics), Matrix (mathematics), Deep Learning, Neoplasms, Genetics, Humans, Molecular Biology, Research Articles, Phylogeny, Likelihood Functions, Basis (linear algebra), integumentary system, business.industry, Deep learning, Computational Biology, Sequence Analysis, DNA, Constraint satisfaction, Tree (data structure), Computational Mathematics, nervous system, Computational Theory and Mathematics, Single cell sequencing, Modeling and Simulation, Mutation, Combinatorial optimization, Artificial intelligence, Single-Cell Analysis, business, tissues, Integer (computer science)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ae09733a42a74e8615822710eb7080ab
https://doi.org/10.1089/cmb.2020.0595

المؤلفون: Mohammad Haghir Ebrahimabadi, S. Cenk Sahinalp, Salem Malikic, Erfan Sadeqi Azer, Roni Khardon

المصدر: iScience
iScience, Vol 23, Iss 11, Pp 101655-(2020)

مصطلحات موضوعية: 0301 basic medicine, Theoretical computer science, Computer science, Perfect phylogeny, Bioinformatics, 02 engineering and technology, Bayesian inference, Article, 03 medical and health sciences, Chain (algebraic topology), Phylogenetics, Reinforcement learning, lcsh:Science, Topology (chemistry), Cancer, Multidisciplinary, business.industry, Deep learning, 021001 nanoscience & nanotechnology, Noise, Tree (data structure), 030104 developmental biology, Combinatorial optimization, lcsh:Q, Artificial intelligence, 0210 nano-technology, business, Algorithm

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fea6fe4742fdf958bd2292422f3634f7
http://europepmc.org/articles/PMC7582044

المؤلفون: David Milewski, Ken-ichi Hanada, Catherine Ade, Tapan K. Maity, Xu Zhang, Shaojian Gao, Udayan Guha, Yue Qi, Constance M. Cultraro, Mohammad Haghir Ebrahimabadi, Khoa D. Nguyen, Cenk Sahinalp, James Chih-Hsin Yang, Javed Khan, Vikram Misra

مصطلحات موضوعية: medicine.medical_treatment, Lymphocyte, Melanoma, Cancer, Immunotherapy, Human leukocyte antigen, Biology, medicine.disease, Germline, Cell therapy, medicine.anatomical_structure, Antigen, medicine, Cancer research, Adenocarcinoma, Lung cancer

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d55d7986198a072fafe33c172a267777
https://doi.org/10.1101/2020.08.04.236331

المؤلفون: Yue Qi, Mohammad Haghir Ebrahimabadi, Khoa D. Nguyen, Shaojian Gao, Tapan K. Maity, Xu Zhang, Vikram Misra, Udayan Guha, Javed Khan, Constance M. Cultraro, Cenk Sahinalp, David Milewski, Catherine Ade, Ken-ichi Hanada, James Chih-Hsin Yang

المصدر: Molecular & Cellular Proteomics : MCP

مصطلحات موضوعية: Male, RT, retention time, Lung Neoplasms, SSP, sequence-specific primer, medicine.medical_treatment, DMSO, dimethyl sulfoxide, Biochemistry, WES, whole-exome sequencing, Analytical Chemistry, HI, hydrophobicity index, MS/MS, tandem MS, Epidermal growth factor receptor, Melanoma, Proteogenomics, CIP2A, cellular inhibitor of PP2A, biology, LDHC, lactate dehydrogenase C, Transporter associated with antigen processing, ErbB Receptors, COSMIC, Catalogue of Somatic Mutations in Cancer, DB, database, Adenocarcinoma, immunotherapy, BLAT, BLAST-like Alignment Tool, FDR, false discovery rate, GWIPS, Genome-Wide Information on Protein Synthesis, Adenocarcinoma of Lung, IGV, Integrative Genomics Viewer, Human leukocyte antigen, NCI, National Cancer Institute, Special Issue: Immunopeptidomics, FBS, fetal bovine serum, Antigen, Antigens, Neoplasm, PTM, post-translationally modified, Cell Line, Tumor, ACT, adoptive T-cell therapy, medicine, Humans, HLA immunopeptidome, TAP, transporter associated with antigen processing, Lung cancer, Molecular Biology, CG, cancer germ line, Aged, pyroGlu, pyroglutamate, ATCC, American Type Culture Collection, IEDB, Immune Epitope Database and Analysis Resource, HLA, human leukocyte antigen, SNV, single nucleotide variant, Research, ALC, average local confidence, EIF, eukaryotic initiation factor, Histocompatibility Antigens Class I, Cancer, Immunotherapy, ACN, acetonitrile, IPA, ingenuity pathway analysis, VCF, variant call format, medicine.disease, neoantigen, EGFR, epidermal growth factor receptor, NGS, next-generation sequencing, lung cancer, INDEL, insertion and deletion, Mutation, Cancer research, biology.protein, lncRNA, long noncoding RNA, Peptides, CCR, Center for Cancer Research, TMB, tumor mutational burden

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::31a512a9af5db7e9b56f4226206fd2ec
https://doi.org/10.1016/j.mcpro.2021.100136