المؤلفون: Balaji A; Department of Computer Science, Rice University, Houston, TX, USA., Kille B; Department of Computer Science, Rice University, Houston, TX, USA., Kappell AD; Signature Science, LLC, 8329 North Mopac Expressway, Austin, TX, USA., Godbold GD; Signature Science, LLC, 1670 Discovery Drive, Charlottesville, VA, USA., Diep M; Fraunhofer USA Center Mid-Atlantic CMA, Riverdale, MD, USA., Elworth RAL; Department of Computer Science, Rice University, Houston, TX, USA., Qian Z; Department of Computer Science, Rice University, Houston, TX, USA., Albin D; Department of Computer Science, Rice University, Houston, TX, USA., Nasko DJ; Department of Computer Science, University of Maryland, College Park, MD, USA., Shah N; Department of Computer Science, University of Maryland, College Park, MD, USA., Pop M; Department of Computer Science, University of Maryland, College Park, MD, USA., Segarra S; Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA., Ternus KL; Signature Science, LLC, 8329 North Mopac Expressway, Austin, TX, USA. kternus@signaturescience.com., Treangen TJ; Department of Computer Science, Rice University, Houston, TX, USA. treangen@rice.edu.

المصدر: Genome biology [Genome Biol] 2022 Jun 20; Vol. 23 (1), pp. 133. Date of Electronic Publication: 2022 Jun 20.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Machine Learning*, Bacteria/genetics ; Bacteria/pathogenicity ; COVID-19 ; Humans ; Leukocytes, Mononuclear/virology ; Open Reading Frames

المؤلفون: Chopyk J; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA. jchopyk@ucsd.edu.; Department of Pathology University of California San Diego, La Jolla, California, USA. jchopyk@ucsd.edu., Nasko DJ; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA., Allard S; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Bui A; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Pop M; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA., Mongodin EF; Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA., Sapkota AR; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA.

المصدر: Environmental microbiome [Environ Microbiome] 2020 Oct 28; Vol. 15 (1), pp. 18. Date of Electronic Publication: 2020 Oct 28.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BMC Country of Publication: England NLM ID: 101768168 Publication Model: Electronic Cited Medium: Internet ISSN: 2524-6372 (Electronic) Linking ISSN: 25246372 NLM ISO Abbreviation: Environ Microbiome Subsets: PubMed not MEDLINE

المؤلفون: Chopyk J; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Nasko DJ; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA; University of Maryland Institute for Advanced Computer Studies, College Park, MD, USA., Allard S; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Callahan MT; Department of Plant Science and Landscape Architecture, College Park, MD, USA., Bui A; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Ferelli AMC; Department of Plant Science and Landscape Architecture, College Park, MD, USA., Chattopadhyay S; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Mongodin EF; Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA., Pop M; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA; University of Maryland Institute for Advanced Computer Studies, College Park, MD, USA., Micallef SA; Department of Plant Science and Landscape Architecture, College Park, MD, USA; Center for Food Safety and Security Systems, University of Maryland School of Medicine, Baltimore, MD, USA., Sapkota AR; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA. Electronic address: ars@umd.edu.

المصدر: The Science of the total environment [Sci Total Environ] 2020 Mar 01; Vol. 706, pp. 135395. Date of Electronic Publication: 2019 Nov 25.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 0330500 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-1026 (Electronic) Linking ISSN: 00489697 NLM ISO Abbreviation: Sci Total Environ Subsets: MEDLINE

مواضيع طبية MeSH: Metagenome*, Agricultural Irrigation ; Bacteria ; Fresh Water ; Mid-Atlantic Region ; Soil Microbiology

المؤلفون: Chopyk J; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Nasko DJ; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA., Allard S; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Bui A; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA., Treangen T; Department of Computer Science, Rice University, Houston, TX, USA., Pop M; Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Sciences, University of Maryland, College Park, MD, USA., Mongodin EF; Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA., Sapkota AR; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, USA. Electronic address: ars@umd.edu.

المصدر: Water research [Water Res] 2020 Feb 01; Vol. 169, pp. 115250. Date of Electronic Publication: 2019 Oct 31.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Pergamon Press Country of Publication: England NLM ID: 0105072 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2448 (Electronic) Linking ISSN: 00431354 NLM ISO Abbreviation: Water Res Subsets: MEDLINE

مواضيع طبية MeSH: Metagenome* , Wastewater*, Drug Resistance, Microbial ; Humans ; Rivers ; Water Microbiology

المؤلفون: Chopyk J; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, School of Public Health Building (255), 4200 Valley Drive, Room 2234P, College Park, MD, 20742, USA., Kulkarni P; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, School of Public Health Building (255), 4200 Valley Drive, Room 2234P, College Park, MD, 20742, USA., Nasko DJ; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA., Bradshaw R; United States Department of Agriculture, Agricultural Research Service, Environmental and Microbial Food Safety Laboratory, Beltsville, MD, 20705, USA., Kniel KE; Department of Animal and Food Sciences, University of Delaware, Newark, DE, 19716, USA., Chiu P; Department of Civil and Environmental Engineering, University of Delaware, Newark, DE, 19716, USA., Sharma M; United States Department of Agriculture, Agricultural Research Service, Environmental and Microbial Food Safety Laboratory, Beltsville, MD, 20705, USA., Sapkota AR; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, School of Public Health Building (255), 4200 Valley Drive, Room 2234P, College Park, MD, 20742, USA. ars@umd.edu.

المصدر: BMC research notes [BMC Res Notes] 2019 Apr 11; Vol. 12 (1), pp. 223. Date of Electronic Publication: 2019 Apr 11.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-0500 (Electronic) Linking ISSN: 17560500 NLM ISO Abbreviation: BMC Res Notes

مواضيع طبية MeSH: Bacteria/*genetics , Caudovirales/*genetics , Environmental Restoration and Remediation/*methods , Iron/*chemistry , Silicon Dioxide/*chemistry , Siphoviridae/*genetics, Adsorption ; Agricultural Irrigation/methods ; Bacteria/classification ; Bacteria/isolation & purification ; Caudovirales/classification ; Caudovirales/isolation & purification ; DNA, Bacterial/genetics ; DNA, Viral/genetics ; Filtration/methods ; High-Throughput Nucleotide Sequencing ; Humans ; Metagenomics/methods ; Phylogeny ; Siphoviridae/classification ; Siphoviridae/isolation & purification ; Virion/isolation & purification ; Wastewater/microbiology ; Wastewater/virology ; Water Purification/methods

المؤلفون: Nasko DJ; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA., Ferrell BD; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA., Moore RM; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA., Bhavsar JD; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA., Polson SW; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA., Wommack KE; Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA wommack@dbi.udel.edu.

المصدر: MBio [mBio] 2019 Mar 05; Vol. 10 (2). Date of Electronic Publication: 2019 Mar 05.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101519231 Publication Model: Electronic Cited Medium: Internet ISSN: 2150-7511 (Electronic) NLM ISO Abbreviation: mBio Subsets: MEDLINE

مواضيع طبية MeSH: Clustered Regularly Interspaced Short Palindromic Repeats* , Genes, Viral* , Metagenome* , Water Microbiology*, Bacteria/*genetics , Bacteria/*virology , DNA, Bacterial/*genetics, DNA, Bacterial/chemistry ; Sequence Homology

المؤلفون: Nasko DJ; Delaware Biotechnology Institute, University of Delaware, Newark, DE, United States., Chopyk J; School of Public Health, University of Maryland, College Park, MD, United States., Sakowski EG; Department of Environmental Health and Engineering, Johns Hopkins University, Baltimore, MD, United States., Ferrell BD; Delaware Biotechnology Institute, University of Delaware, Newark, DE, United States., Polson SW; Delaware Biotechnology Institute, University of Delaware, Newark, DE, United States., Wommack KE; Delaware Biotechnology Institute, University of Delaware, Newark, DE, United States.

المصدر: Frontiers in microbiology [Front Microbiol] 2018 Dec 14; Vol. 9, pp. 3053. Date of Electronic Publication: 2018 Dec 14 (Print Publication: 2018).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

المؤلفون: Meisel JS; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Nasko DJ; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Brubach B; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Cepeda-Espinoza V; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Chopyk J; School of Public Health, University of Maryland, College Park, College Park, MD, USA., Corrada-Bravo H; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Fedarko M; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Ghurye J; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Javkar K; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Olson ND; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Shah N; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Allard SM; School of Public Health, University of Maryland, College Park, College Park, MD, USA., Bazinet AL; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA., Bergman NH; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA., Brown A; Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA., Caporaso JG; The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Conlan S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., DiRuggiero J; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., Forry SP; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Hasan NA; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.; CosmosID, Inc., Rockville, MD, USA., Kralj J; Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA., Luethy PM; Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA., Milton DK; Maryland Institute for Applied Environmental Health, School of Public Health, University of Maryland, College Park, College Park, MD, USA., Ondov BD; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Preheim S; Environmental Health and Engineering, Johns Hopkins University, Baltimore, MD, USA., Ratnayake S; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA., Rogers SM; B.Next, In-Q-Tel, Inc., Arlington, VA, USA., Rosovitz MJ; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA., Sakowski EG; Environmental Health and Engineering, Johns Hopkins University, Baltimore, MD, USA., Schliebs NO; Department of Computer Science, University of Tübingen, Tübingen, Germany., Sommer DD; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA., Ternus KL; Signature Science, LLC, Arlington, VA, USA., Uritskiy G; Department of Biology, Johns Hopkins University, Baltimore, MD, USA., Zhang SX; Division of Medical Microbiology, Department of Pathology, School of Medicine, Johns Hopkins University, Baltimore, MD, USA., Pop M; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA., Treangen TJ; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA. treangen@rice.edu.; Present address: Department of Computer Science - MS-132, Rice University, P.O. Box 1892, Houston, TX, 77005-1892, USA. treangen@rice.edu.

المصدر: Microbiome [Microbiome] 2018 Nov 05; Vol. 6 (1), pp. 197. Date of Electronic Publication: 2018 Nov 05.

نوع المنشور: Congress; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 101615147 Publication Model: Electronic Cited Medium: Internet ISSN: 2049-2618 (Electronic) Linking ISSN: 20492618 NLM ISO Abbreviation: Microbiome Subsets: MEDLINE

مواضيع طبية MeSH: Biological Warfare Agents*, Computational Biology/*methods , High-Throughput Nucleotide Sequencing/*methods , Metagenomics/*methods, Humans ; Microbiota/physiology ; Sequence Analysis, DNA/methods

المؤلفون: Nasko DJ; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA., Treangen TJ; Department of Computer Science, Rice University, Houston, TX, USA. treangen@rice.edu.

المصدر: Genome biology [Genome Biol] 2018 Oct 30; Vol. 19 (1), pp. 165. Date of Electronic Publication: 2018 Oct 30.

نوع المنشور: Letter; Research Support, N.I.H., Intramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms* , Databases, Genetic* , Sequence Analysis, DNA*, Bacillus/genetics ; Computer Simulation ; Genetic Variation ; Metagenome ; Species Specificity ; Time Factors

المؤلفون: Chopyk J; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, United States., Allard S; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, United States., Nasko DJ; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, United States., Bui A; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, United States., Mongodin EF; Institute for Genome Sciences and Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, United States., Sapkota AR; Maryland Institute for Applied Environmental Health, University of Maryland School of Public Health, College Park, MD, United States.

المصدر: Frontiers in microbiology [Front Microbiol] 2018 Apr 24; Vol. 9, pp. 792. Date of Electronic Publication: 2018 Apr 24 (Print Publication: 2018).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE