المؤلفون: Sébastien Bridel, Valérie Bouchez, Bryan Brancotte, Sofia Hauck, Nathalie Armatys, Annie Landier, Estelle Mühle, Sophie Guillot, Julie Toubiana, Martin C. J. Maiden, Keith A. Jolley, Sylvain Brisse

المصدر: Nature Communications, Vol 13, Iss 1, Pp 1-12 (2022)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/1135550315c240f588487379fe794401

المؤلفون: Melanie Hennart, Chiara Crestani, Sebastien Bridel, Nathalie Armatys, Sylvie Bremont, Annick Carmi-Leroy, Annie Landier, Virginie Passet, Laure Fonteneau, Sophie Vaux, Julie Toubiana, Edgar Badell-Ocando, Sylvain Brisse

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::c25ebeb70bd996fcef558f56ebe7f055
https://doi.org/10.1101/2023.02.20.529124

المؤلفون: Noémie, Lefrancq, Valérie, Bouchez, Nadia, Fernandes, Alex-Mikael, Barkoff, Thijs, Bosch, Tine, Dalby, Thomas, Åkerlund, Jessica, Darenberg, Katerina, Fabianova, Didrik F, Vestrheim, Norman K, Fry, Juan José, González-López, Karolina, Gullsby, Adele, Habington, Qiushui, He, David, Litt, Helena, Martini, Denis, Piérard, Paola, Stefanelli, Marc, Stegger, Jana, Zavadilova, Nathalie, Armatys, Annie, Landier, Sophie, Guillot, Samuel L, Hong, Philippe, Lemey, Julian, Parkhill, Julie, Toubiana, Simon, Cauchemez, Henrik, Salje, Sylvain, Brisse

مصطلحات موضوعية: Europe, Pertussis Vaccine, Genotype, Whooping Cough, Humans, Bordetella pertussis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::f4a8cd590af8ea319d2888a48deb9318
http://hdl.handle.net/10029/625755

المؤلفون: Noémie Lefrancq, Valérie Bouchez, Nadia Fernandes, Alex-Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik F. Vestrheim, Norman K. Fry, Juan José González-López, Karolina Gullsby, Adele Habington, Qiushui He, David Litt, Helena Martini, Denis Piérard, Paola Stefanelli, Marc Stegger, Jana Zavadilova, Nathalie Armatys, Annie Landier, Sophie Guillot, Samuel L. Hong, Philippe Lemey, Julian Parkhill, Julie Toubiana, Simon Cauchemez, Henrik Salje, Sylvain Brisse

المساهمون: Modélisation mathématique des maladies infectieuses - Mathematical modelling of Infectious Diseases, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), University of Cambridge [UK] (CAM), Biodiversité et Epidémiologie des Bactéries pathogènes - Biodiversity and Epidemiology of Bacterial Pathogens, Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Centre national de Référence de la Coqueluche et autres Bordetelloses - National Reference Center for Whooping Cough and other Bordetella infections (CNR), University of Turku, National Institute for Public Health and the Environment [Bilthoven] (RIVM), Statens Serum Institut [Copenhagen], The Public Health Agency of Sweden, National Institute of Public Health [Prague], Norwegian Institute of Public Health [Oslo] (NIPH), Public Health England [London], Vall d'Hebron University Hospital [Barcelona], Universitat Autònoma de Barcelona (UAB), Uppsala University, Children's Health Ireland [Crumlin, Dublin, Ireland] (CHI), Vrije Universiteit Brussel (VUB), Istituto Superiore di Sanità (ISS), Rega Institute, Département de Pédiatrie et maladies infectieuses [CHU Necker], CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), The study was supported financially by the French Government Investissement d’Avenir grant ANR-16-CONV-0005 (INCEPTION project, to S.B. and H.S.). The National Reference Center for Whooping Cough and Other Bordetella Infections receives support from Institut Pasteur and Public Health France (Santé publique France, Saint Maurice, France). This work was also supported financially by the French Government’s Investissement d’Avenir program Laboratoire d’Excellence 'Integrative Biology of Emerging Infectious Diseases' (ANR-10-LABX-62-IBEID) to S.B. and a European Research Council (no. 804744 to H.S.). P.L. acknowledges funding from the European Research Council under the European Union’s Horizon 2020 Research and Innovation Programme (grant agreement no. 725422-ReservoirDOCS)., ANR-16-CONV-0005,INCEPTION,Institut Convergences pour l'étude de l'Emergence des Pathologies au Travers des Individus et des populatiONs(2016), ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), European Project: 804744,H2020-EU.1.1.,ARBODYNAMIC(2019), European Project: 725422,ERC-2016-COG,ReservoirDOCS(2017), Supporting clinical sciences, Microbiology and Infection Control, Clinical Biology, Lefrancq, Noémie [0000-0001-5991-6169], Bouchez, Valérie [0000-0002-5947-6383], Fernandes, Nadia [0000-0003-4595-9939], Dalby, Tine [0000-0003-4774-7091], Åkerlund, Thomas [0000-0001-7516-0218], Darenberg, Jessica [0000-0002-8528-8570], Fabianova, Katerina [0000-0001-8374-4395], Fry, Norman K [0000-0003-4862-6507], González-López, Juan José [0000-0003-2419-5909], Gullsby, Karolina [0000-0002-9673-0483], Habington, Adele [0000-0001-6997-3327], Litt, David [0000-0002-9215-0553], Martini, Helena [0000-0002-5877-9948], Piérard, Denis [0000-0002-7756-3691], Stefanelli, Paola [0000-0003-1620-4385], Stegger, Marc [0000-0003-0321-1180], Armatys, Nathalie [0000-0003-2042-4241], Landier, Annie [0000-0002-8278-4026], Hong, Samuel L [0000-0001-6354-4943], Lemey, Philippe [0000-0003-2826-5353], Parkhill, Julian [0000-0002-7069-5958], Cauchemez, Simon [0000-0001-9186-4549], Salje, Henrik [0000-0003-3626-4254], Brisse, Sylvain [0000-0002-2516-2108], Apollo - University of Cambridge Repository

المصدر: Science Translational Medicine
Science Translational Medicine, 2022, 14 (642), pp.eabn3253. ⟨10.1126/scitranslmed.abn3253⟩

مصطلحات موضوعية: Europe, Pertussis Vaccine, Genotype, Whooping Cough, [SDV]Life Sciences [q-bio], Humans, General Medicine, [SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, Bordetella pertussis

وصف الملف: application/octet-stream

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34eb11f730004b18499647acd36d8554

المؤلفون: Sébastien Bridel, Valérie Bouchez, Bryan Brancotte, Sofia Hauck, Nathalie Armatys, Annie Landier, Estelle Mühle, Sophie Guillot, Julie Toubiana, Martin C.J. Maiden, Keith A. Jolley, Sylvain Brisse

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a69d2f0311cc518daa6b0bb4a97d24ed
https://doi.org/10.1101/2022.01.20.475763

المؤلفون: Tine Dalby, Noémie Lefrancq, Simon Cauchemez, Philippe Lemey, Annie Landier, Åkerlund T, Adele Habington, Alex-Mikael Barkoff, Didrik F. Vestrheim, Norman K. Fry, Julie Toubiana, Sylvain Brisse, Marc Stegger, Denis Pierard, Bosch T, Julian Parkhill, Bouchez, Helena Martini, K. Fabianova, Nathalie Armatys, Paola Stefanelli, Sophie Guillot, González-López Jj, Henrik Salje, Gullsby K, Qiushui He, Samuel L. Hong, J. Zavadilova, Fernandes N, David Litt

مصطلحات موضوعية: Genetics, Bordetella pertussis, Infection risk, Transmission (mechanics), law, Population size, Genotype, Biology, Acellular vaccines, biology.organism_classification, Whole cell, Pathogen, law.invention

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::6bcf208f95d036bf94aef819800b370c
https://doi.org/10.1101/2021.11.01.466439

المؤلفون: Sophie, Guillot, Assaf, Mizrahi, Nathalie, Armatys, Laureen, Chat, Alban, Le Monnier, Sylvain, Brisse, Julie, Toubiana

المصدر: Open Forum Infectious Diseases

مصطلحات موضوعية: FilmArray respiratory panel, AcademicSubjects/MED00290, molecular diagnosis, whooping cough, Brief Reports, Bordetella pertussis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::24373cce630cfb9871a61adb1979a697
https://pubmed.ncbi.nlm.nih.gov/32793765

المؤلفون: Alban Le Monnier, Laureen Chat, Sophie Guillot, A. Mizrahi, Julie Toubiana, Sylvain Brisse, Nathalie Armatys

المساهمون: Biodiversité et Epidémiologie des Bactéries pathogènes - Biodiversity and Epidemiology of Bacterial Pathogens, Institut Pasteur [Paris], Centre national de Référence de la Coqueluche et autres Bordetelloses - National Reference Center for Whooping Cough and other Bordetella infections (CNR), Centre hospitalier Saint-Joseph [Paris], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Bactéries, Pathogènes et Santé (UBaPS), Faculté de Pharmacie, Université Paris-Sud - Paris 11 (UP11)-Université Paris-Sud - Paris 11 (UP11), Département de Pédiatrie et maladies infectieuses [CHU Necker], CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Financial support. This work was supported financially by Santé Publique France (Saint-Maurice, France) and by continuous institutional support from Institut Pasteur., Institut Pasteur [Paris] (IP), Institut Pasteur [Paris]-Institut Pasteur [Paris]

المصدر: Open Forum Infectious Diseases
Open Forum Infectious Diseases, Oxford University Press, 2020, 7 (8 (ofaa267)), pp.2169-2171. ⟨10.1093/ofid/ofaa267⟩
Open Forum Infectious Diseases, 2020, 7 (8 (ofaa267)), pp.2169-2171. ⟨10.1093/ofid/ofaa267⟩

مصطلحات موضوعية: 0301 basic medicine, Bordetella pertussis, [SDV]Life Sciences [q-bio], 030106 microbiology, Pertussis toxin, Microbiology, 03 medical and health sciences, 0302 clinical medicine, molecular diagnosis, Medicine, whooping cough, 030212 general & internal medicine, Respiratory system, Whooping cough, health care economics and organizations, FilmArray respiratory panel, biology, business.industry, respiratory system, medicine.disease, biology.organism_classification, bacterial infections and mycoses, 3. Good health, respiratory tract diseases, Infectious Diseases, Oncology, Detection rate, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66bfd6ae00ce1404316030fd61f13613
https://hal-pasteur.archives-ouvertes.fr/pasteur-03255758

المؤلفون: Edgar Badell, Julie Toubiana, Melanie Hennart, Sylvain Brisse, Alexis Criscuolo, Julien Guglielmini

المساهمون: Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur [Paris] (IP)-Université Paris Cité (UPCité), Biodiversité et Epidémiologie des Bactéries pathogènes - Biodiversity and Epidemiology of Bacterial Pathogens, Collège Doctoral, Sorbonne Université (SU), Centre national de Référence des Corynebactéries du Complexe Diphtheriae - National Reference Center Corynebacteria of the diphtheriae complex (CNR), Département de Pédiatrie et maladies infectieuses [CHU Necker], CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Département de Biologie Computationnelle - Department of Computational Biology, This research was funded, in whole or in part, by Institut Pasteur and Santé publique France. For the purpose of open access, the authors have applied a CC-BY public copyright license to any Author Manuscript version arising from this submission, Received financial support from the French Government Investissement d’Avenir Programme Laboratoire d’Excellence on Integrative Biology of Emerging Infectious Diseases (ANR-10-LABX-62-IBEID). M.H. was supported financially by a PhD grant from the European Joint Programme One Health, which has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under Grant Agreement No. 570773830, We thank Melody Dazasfor assistance in the early steps of the project and Annick Carmi-Leroy, Annie Landier, Nathalie Armatys and Virginie Passet for technical assistance with the microbiological characterization and sequencing of the Corynebacterium diphtheriaestrains from the National Reference Center. We thank Vincent Enouf and the P2M core facility of Institut Pasteur for genomic sequencing. This work used the computational and storage services (TARS cluster) provided by the IT department at the Institut Pasteur, Paris, ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010), European Project: 773830,H2020-SFS-2017-1,MedVetKlebs (a component of European Joint Programme One Health)(2018), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris], Collège doctoral [Sorbonne universités], European Project: 773830,H2020-SFS-2017-1,MedVetKlebs (a component of European Joint Programme One Health EJP)(2018)

المصدر: Journal of Clinical Microbiology
Journal of Clinical Microbiology, 2021, pp.JCM0158121. ⟨10.1128/jcm.01581-21⟩
J Clin Microbiol
Journal of Clinical Microbiology, American Society for Microbiology, 2021, pp.JCM0158121. ⟨10.1128/jcm.01581-21⟩

مصطلحات موضوعية: OHEJP, Microbiology (medical), Epidemiology, [SDV]Life Sciences [q-bio], Genomics, Genome, 03 medical and health sciences, Humans, Genotyping, Phylogeny, 030304 developmental biology, Corynebacterium diphtheriae, Genetics, 0303 health sciences, Phylogenetic tree, biology, 030306 microbiology, Strain (biology), Microevolution, Diphtheria, Codes4strains, biology.organism_classification, 3. Good health, microevolution, Multilocus sequence typing, cgMLST, Genome, Bacterial, Multilocus Sequence Typing

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c750a3e55119dd4491077c8c2a243e5a
https://hal-pasteur.archives-ouvertes.fr/pasteur-03346634/document

المؤلفون: Linda Grillová, Stéphane Lastère, Hilde Angermeier, Mathieu Picardeau, Marine Giard, Marc Levy

المساهمون: Biologie des Spirochètes / Biology of Spirochetes, Institut Pasteur [Paris] (IP), European Programme for Public Health Microbiology Training (EUPHEM), European Centre for Disease Prevention and Control [Stockholm, Sweden] (ECDC), Centre Hospitalier de Polynésie Française, Direction de la Santé - Bureau de veille sanitaire [Papeete], This work was financially supported by a PTR grant (PTR30-17) from the Institut Pasteur (MP, LG) and the European Programme for Public Health Microbiology (EUPHEM) of the European Centre for Disease Prevention and Control (HA). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript., We would like to thank Dr. Robert Anthony Gaultney for his assistance with the English revi- sion and also Dr. Silvia Herrera-Le ́on as a EUPHEM frontline coordinator for reviewing this manuscript. We thank Dr. Vincent Enouf and the team of the core facility P2M (Institut Pas- teur, Mutualized Platform for Microbiology) for genomic sequencing and the staff of the Ref- erence Center for Leptospirosis (Pascale Bourhy, Nathalie Armatys, Jean-Franc ̧ois Mariet and Farida Zinini) for support and processing some of the samples.

المصدر: PLoS Neglected Tropical Diseases
PLoS Neglected Tropical Diseases, 2020, 14 (9), pp.e0008662. ⟨10.1371/journal.pntd.0008662⟩
PLoS Neglected Tropical Diseases, Vol 14, Iss 9, p e0008662 (2020)

مصطلحات موضوعية: Male, Bacterial Diseases, 0301 basic medicine, Swine, Epidemiology, RC955-962, Artificial Gene Amplification and Extension, Pathology and Laboratory Medicine, Polymerase Chain Reaction, Medical Conditions, 0302 clinical medicine, Arctic medicine. Tropical medicine, Zoonoses, Medicine and Health Sciences, Child, Phylogeny, Aged, 80 and over, Leptospira, Mammals, Molecular Epidemiology, education.field_of_study, biology, Zoonosis, Eukaryota, Middle Aged, Leptospirosis, Bacterial Pathogens, Leptospira Interrogans, Infectious Diseases, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, Medical Microbiology, Vertebrates, Female, Public aspects of medicine, RA1-1270, Pathogens, Leptospira interrogans, Research Article, Neglected Tropical Diseases, Adult, DNA, Bacterial, Adolescent, Genotype, 030231 tropical medicine, Population, Serogroup, Research and Analysis Methods, Microbiology, Polynesia, Infectious Disease Epidemiology, Young Adult, 03 medical and health sciences, Dogs, Bacterial Proteins, medicine, Animals, Humans, Molecular Biology Techniques, education, Microbial Pathogens, Molecular Biology, Genotyping, Aged, Bacteria, Molecular epidemiology, Organisms, Public Health, Environmental and Occupational Health, Genetic Variation, Biology and Life Sciences, Sequence Analysis, DNA, Tropical Diseases, bacterial infections and mycoses, biology.organism_classification, medicine.disease, Virology, Rats, Nested Polymerase Chain Reaction, Molecular Typing, 030104 developmental biology, Amniotes, Zoology, Nested polymerase chain reaction, Follow-Up Studies

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d33b26db390cd13a37ba452067cf64a8
https://hal-pasteur.archives-ouvertes.fr/pasteur-03697680