المؤلفون: Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA. chantal.vogels@yale.edu.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, USA. chantal.vogels@yale.edu., Hill V; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, USA., Paul LM; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, Florida, USA., Sodeinde A; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Taylor-Salmon E; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.; Department of Pediatrics, Yale School of Medicine, New Haven, Connecticut, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA.; Sydney Institute for Infectious Diseases, School of Medical Sciences, University of Sydney, Sydney, NSW, Australia., Dijk D; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC Location AMC, Amsterdam, The Netherlands., Jonges M; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC Location AMC, Amsterdam, The Netherlands., Welkers MRA; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC Location AMC, Amsterdam, The Netherlands.; Department of Infectious Diseases, Public Health Service of Amsterdam, Amsterdam, The Netherlands., Locksmith T; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Dong Y; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, USA., Tarigopula N; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, USA., Tekin O; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, USA., Schmedes S; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, USA., Bunch S; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Cano N; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Jaber R; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Panzera C; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Stryker I; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Vergara J; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Zimler R; Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, USA., Kopp E; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Heberlein L; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, USA., Herzog KS; Department of Epidemiology, University of Nebraska Medical Center, Omaha, Nebraska, USA., Fauver JR; Department of Epidemiology, University of Nebraska Medical Center, Omaha, Nebraska, USA., Morrison AM; Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, USA., Michael SF; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, Florida, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA. nathan.grubaugh@yale.edu.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, USA. nathan.grubaugh@yale.edu.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA. nathan.grubaugh@yale.edu.; Public Health Modeling Unit, Yale School of Public Health, New Haven, Connecticut, USA. nathan.grubaugh@yale.edu.

المصدر: BMC genomics [BMC Genomics] 2024 May 01; Vol. 25 (1), pp. 433. Date of Electronic Publication: 2024 May 01.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

مواضيع طبية MeSH: Dengue Virus*/genetics , Dengue Virus*/isolation & purification , Dengue Virus*/classification , Whole Genome Sequencing*/methods , Genome, Viral* , Serogroup*, Humans ; Genotype ; Dengue/virology ; Dengue/diagnosis ; High-Throughput Nucleotide Sequencing/methods ; RNA, Viral/genetics

المؤلفون: Mao T; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Kim J; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510.; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh PA 15213., Peña-Hernández MA; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510.; Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven CT 06510., Valle G; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510., Moriyama M; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Luyten S; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Ott IM; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Gomez-Calvo ML; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Gehlhausen JR; Department of Dermatology, Yale University School of Medicine, New Haven, CT 06510., Baker E; Department of Dermatology, Yale University School of Medicine, New Haven, CT 06510., Israelow B; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510.; Department of Internal Medicine, Section of Infectious Diseases, Yale University School of Medicine, New Haven, CT 06510., Slade M; Department of Internal Medicine, Section of Occupational Medicine, Yale University School of Medicine, New Haven, CT 06510., Sharma L; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510.; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh PA 15213., Liu W; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510., Ryu C; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510., Korde A; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510., Lee CJ; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510., Silva Monteiro V; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Lucas C; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Dong H; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Yang Y; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Gopinath S; Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115., Wilen CB; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510.; Department of Laboratory Medicine, Yale University School of Medicine, New Haven, CT 06510., Palm N; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510., Dela Cruz CS; Department of Internal Medicine, Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, CT 06510.; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh PA 15213.; Veterans Affairs Pittsburgh Healthcare System, Pittsburgh, PA 15240., Iwasaki A; Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510.; Department of Dermatology, Yale University School of Medicine, New Haven, CT 06510.; Center for Infection and Immunity, Yale University School of Medicine, New Haven, CT 06510.; HHMI, Chevy Chase, MD 20815.

مؤلفون مشاركون: Yale SARS-CoV-2 Genomic Surveillance Initiative

المصدر: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Apr 30; Vol. 121 (18), pp. e2319566121. Date of Electronic Publication: 2024 Apr 22.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

مواضيع طبية MeSH: Neomycin*/pharmacology , Neomycin*/administration & dosage , Administration, Intranasal* , Antiviral Agents*/pharmacology , Antiviral Agents*/administration & dosage , SARS-CoV-2*/immunology , SARS-CoV-2*/drug effects, Animals ; Mice ; Humans ; COVID-19/immunology ; COVID-19/prevention & control ; COVID-19/virology ; Respiratory Tract Infections/immunology ; Respiratory Tract Infections/drug therapy ; Respiratory Tract Infections/virology ; Respiratory Tract Infections/prevention & control ; Nasal Mucosa/immunology ; Nasal Mucosa/virology ; Nasal Mucosa/drug effects ; Disease Models, Animal ; COVID-19 Drug Treatment ; Mesocricetus ; Female ; Influenza A virus/drug effects ; Influenza A virus/immunology

المؤلفون: Klein J; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Wood J; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Jaycox JR; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Dhodapkar RM; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA.; Department of Ophthalmology, USC Keck School of Medicine, Los Angeles, CA, USA., Lu P; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Gehlhausen JR; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA.; Department of Dermatology, Yale School of Medicine, New Haven, CT, USA., Tabachnikova A; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Greene K; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Tabacof L; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Malik AA; Yale Institute for Global Health, Yale School of Public Health, New Haven, CT, USA., Silva Monteiro V; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Silva J; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Kamath K; SerImmune, Goleta, CA, USA., Zhang M; SerImmune, Goleta, CA, USA., Dhal A; SerImmune, Goleta, CA, USA., Ott IM; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Valle G; Department of Internal Medicine (Pulmonary, Critical Care and Sleep Medicine), Yale School of Medicine, New Haven, CT, USA., Peña-Hernández M; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA.; Department of Microbiology, Yale School of Medicine, New Haven, CT, USA., Mao T; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Bhattacharjee B; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Takahashi T; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Lucas C; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA., Song E; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., McCarthy D; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Breyman E; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Tosto-Mancuso J; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Dai Y; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Perotti E; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Akduman K; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Tzeng TJ; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Xu L; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA., Geraghty AC; Department of Neurology and Neurological Sciences, Stanford University, Palo Alto, CA, USA., Monje M; Department of Neurology and Neurological Sciences, Stanford University, Palo Alto, CA, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Yildirim I; Yale Institute for Global Health, Yale School of Public Health, New Haven, CT, USA.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA.; Department of Pediatrics (Infectious Diseases), Yale New Haven Hospital, New Haven, CT, USA.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Shon J; SerImmune, Goleta, CA, USA., Medzhitov R; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Lutchmansingh D; Department of Internal Medicine (Pulmonary, Critical Care and Sleep Medicine), Yale School of Medicine, New Haven, CT, USA., Possick JD; Department of Internal Medicine (Pulmonary, Critical Care and Sleep Medicine), Yale School of Medicine, New Haven, CT, USA., Kaminski N; Department of Internal Medicine (Pulmonary, Critical Care and Sleep Medicine), Yale School of Medicine, New Haven, CT, USA., Omer SB; Yale Institute for Global Health, Yale School of Public Health, New Haven, CT, USA.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Internal Medicine (Infectious Diseases), Yale School of Medicine, New Haven, CT, USA., Krumholz HM; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA.; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.; Section of Cardiovascular Medicine, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.; Department of Health Policy and Management, Yale School of Public Health, New Haven, CT, USA., Guan L; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA.; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA., Dela Cruz CS; Department of Internal Medicine (Pulmonary, Critical Care and Sleep Medicine), Yale School of Medicine, New Haven, CT, USA.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA., van Dijk D; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA. david.vandijk@yale.edu.; Department of Computer Science, Yale University, New Haven, CT, USA. david.vandijk@yale.edu.; Department of Internal Medicine (Cardiology), Yale School of Medicine, New Haven, CT, USA. david.vandijk@yale.edu., Ring AM; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA. aaron.ring@yale.edu.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA. aaron.ring@yale.edu., Putrino D; Abilities Research Center, Icahn School of Medicine at Mount Sinai, New York, NY, USA. david.putrino@mountsinai.org.; Department of Rehabilitation and Human Performance, Icahn School of Medicine at Mount Sinai, New York, NY, USA. david.putrino@mountsinai.org., Iwasaki A; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA. akiko.iwasaki@yale.edu.; Center for Infection and Immunity, Yale School of Medicine, New Haven, CT, USA. akiko.iwasaki@yale.edu.; Howard Hughes Medical Institute, Chevy Chase, MD, USA. akiko.iwasaki@yale.edu.

المصدر: Nature [Nature] 2023 Nov; Vol. 623 (7985), pp. 139-148. Date of Electronic Publication: 2023 Sep 25.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: Antibodies, Viral*/blood , Antibodies, Viral*/immunology , Herpesvirus 4, Human*/immunology , Hydrocortisone*/blood , Lymphocytes*/immunology , Myeloid Cells*/immunology , Post-Acute COVID-19 Syndrome*/diagnosis , Post-Acute COVID-19 Syndrome*/immunology , Post-Acute COVID-19 Syndrome*/physiopathology , Post-Acute COVID-19 Syndrome*/virology , SARS-CoV-2*/immunology, Humans ; Biomarkers/blood ; Cross-Sectional Studies ; Immunophenotyping ; Machine Learning

المؤلفون: Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, United States of America., Hill V; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, United States of America., Paul LM; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, Florida, United States of America., Sodeinde A; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Taylor-Salmon E; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Department of Pediatrics, Yale School of Medicine, New Haven, Connecticut, United States of America., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Sydney Institute for Infectious Diseases, School of Medical Sciences, University of Sydney, NSW, Australia., Dijk D; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC location AMC, Amsterdam, The Netherlands., Jonges M; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC location AMC, Amsterdam, The Netherlands., Welkers MRA; Department of Medical Microbiology & Infection Prevention, Amsterdam UMC location AMC, Amsterdam, The Netherlands.; Department of Infectious Diseases, Public Health Service of Amsterdam, Amsterdam, The Netherlands., Locksmith T; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Dong Y; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, United States of America., Tarigopula N; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, United States of America., Tekin O; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, United States of America., Schmedes S; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Jacksonville, FL, United States of America., Bunch S; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Cano N; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Jaber R; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Panzera C; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Stryker I; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Vergara J; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Zimler R; Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, United States of America., Kopp E; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Heberlein L; Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, United States of America., Morrison AM; Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, United States of America., Michael SF; Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, Florida, United States of America., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.; Yale Institute for Global Health, Yale University, New Haven, Connecticut, United States of America.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.; Public Health Modeling Unit, Yale School of Public Health, New Haven, Connecticut, United States of America.

المصدر: MedRxiv : the preprint server for health sciences [medRxiv] 2023 Oct 13. Date of Electronic Publication: 2023 Oct 13.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

المؤلفون: Allicock OM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. Electronic address: orchid.allicock@yale.edu., Yolda-Carr D; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Earnest R; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Vega N; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Kalinich C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Wyllie AL; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA.

المصدر: Progress in biophysics and molecular biology [Prog Biophys Mol Biol] 2023 Sep; Vol. 182, pp. 103-108. Date of Electronic Publication: 2023 Jun 25.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Pergamon Press Country of Publication: England NLM ID: 0401233 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-1732 (Electronic) Linking ISSN: 00796107 NLM ISO Abbreviation: Prog Biophys Mol Biol Subsets: MEDLINE

مواضيع طبية MeSH: SARS-CoV-2*/genetics , COVID-19*/diagnosis, Humans ; Endopeptidase K ; Saliva ; Polymerase Chain Reaction ; RNA ; Sensitivity and Specificity ; COVID-19 Testing

المؤلفون: Baaijens JA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. j.a.baaijens@tudelft.nl.; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands. j.a.baaijens@tudelft.nl., Zulli A; Department of Chemical and Environmental Engineering, Yale University, New Haven, CT, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Nika I; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands., van der Lugt MJ; Department of Intelligent Systems, Delft University of Technology, Delft, Netherlands., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Epidemiology, University of Nebraska Medical Center, Omaha, NE, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Duvallet C; Biobot Analytics, Inc., Cambridge, MA, USA., McElroy KA; Biobot Analytics, Inc., Cambridge, MA, USA., Ghaeli N; Biobot Analytics, Inc., Cambridge, MA, USA., Imakaev M; Biobot Analytics, Inc., Cambridge, MA, USA., Mckenzie-Bennett MF; Ginkgo Bioworks, Inc., Boston, MA, USA., Robison K; Ginkgo Bioworks, Inc., Boston, MA, USA., Plocik A; Ginkgo Bioworks, Inc., Boston, MA, USA., Schilling R; Ginkgo Bioworks, Inc., Boston, MA, USA., Pierson M; Ginkgo Bioworks, Inc., Boston, MA, USA., Littlefield R; Ginkgo Bioworks, Inc., Boston, MA, USA., Spencer ML; Ginkgo Bioworks, Inc., Boston, MA, USA., Simen BB; Ginkgo Bioworks, Inc., Boston, MA, USA., Hanage WP; Center for Communicable Disease Dynamics and Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA., Peccia J; Department of Chemical and Environmental Engineering, Yale University, New Haven, CT, USA., Baym M; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

مؤلفون مشاركون: Yale SARS-CoV-2 Genomic Surveillance Initiative

المصدر: Genome biology [Genome Biol] 2022 Nov 08; Vol. 23 (1), pp. 236. Date of Electronic Publication: 2022 Nov 08.

نوع المنشور: Journal Article; Research Support, U.S. Gov't, P.H.S.; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: SARS-CoV-2*/genetics , COVID-19*, Humans ; Wastewater ; RNA, Viral/genetics ; Transcriptome

المؤلفون: Stahlfeld A; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Glick LR; Yale School of Medicine, 333 Cedar St, New Haven, CT 06511, United States., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Craft SB; Yale School of Medicine, 333 Cedar St, New Haven, CT 06511, United States., Yolda-Carr D; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Harden CA; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Nakahata M; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Farhadian SF; Yale School of Medicine, 333 Cedar St, New Haven, CT 06511, United States., Grant LR; Medical and Scientific Affairs, Pfizer Inc, 500 Arcola Rd, Collegeville, PA 19426, United States., Alexander-Parrish R; Medical and Scientific Affairs, Pfizer Inc, 500 Arcola Rd, Collegeville, PA 19426, United States., Arguedas A; Medical and Scientific Affairs, Pfizer Inc, 500 Arcola Rd, Collegeville, PA 19426, United States., Gessner BD; Medical and Scientific Affairs, Pfizer Inc, 500 Arcola Rd, Collegeville, PA 19426, United States., Weinberger DM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States., Wyllie AL; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, LEPH823, 60 College St, New Haven, CT 06510, United States.

المصدر: FEMS microbes [FEMS Microbes] 2022 Oct 16; Vol. 3, pp. xtac026. Date of Electronic Publication: 2022 Oct 16 (Print Publication: 2022).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9918227365806676 Publication Model: eCollection Cited Medium: Internet ISSN: 2633-6685 (Electronic) Linking ISSN: 26336685 NLM ISO Abbreviation: FEMS Microbes Subsets: PubMed not MEDLINE

المؤلفون: Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Coppi A; Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Earnest R; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Ferguson D; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Kerantzas N; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Warner F; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Young HP; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Billig K; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Koch RT; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Pham K; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; College of Public Health, University of Nebraska Medical Center, Omaha, NE, USA., Hahn AM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Tikhonova IR; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA., Castaldi C; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA., De Kumar B; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA., Pettker CM; Quality and Safety, Yale New Haven Health, New Haven, CT, USA.; Department of Obstetrics, Gynecology, and Reproductive Sciences, Yale School of Medicine, New Haven, CT, USA., Warren JL; Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA., Weinberger DM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Landry ML; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.; Section of Infectious Diseases, Department of Medicine, Yale School of Medicine, New Haven, CT, USA.; Clinical Virology Laboratory, Yale New Haven Hospital, New Haven, CT, USA., Peaper DR; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA., Schulz W; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.

المصدر: Med (New York, N.Y.) [Med] 2022 May 13; Vol. 3 (5), pp. 325-334.e4. Date of Electronic Publication: 2022 Apr 06.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 101769215 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-6340 (Electronic) Linking ISSN: 26666340 NLM ISO Abbreviation: Med Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , SARS-CoV-2*/genetics, COVID-19 Vaccines ; Hospitalization ; Humans

SCR Organism: SARS-CoV-2 variants

المؤلفون: Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. mary.petrone@yale.edu., Rothman JE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Russell A; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Lasek-Nesselquist E; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Badr H; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, 21218, MD, USA., Kelly K; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Omerza G; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Renzette N; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Watkins AE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Brito AF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Earnest R; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Tikhonova IR; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Castaldi C; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Kelly JP; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Shudt M; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Plitnick J; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Schneider E; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Murphy S; Murphy Medical Associates, Greenwich, CT, 06830, USA., Neal C; Murphy Medical Associates, Greenwich, CT, 06830, USA., Laszlo E; Murphy Medical Associates, Greenwich, CT, 06830, USA., Altajar A; Murphy Medical Associates, Greenwich, CT, 06830, USA., Pearson C; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Muyombwe A; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Downing R; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Razeq J; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Niccolai L; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Wilson MS; Yale Health Center, Yale University, New Haven, CT, 06510, USA., Anderson ML; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Wang J; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Liu C; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Hui P; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Mane S; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Taylor BP; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA., Hanage WP; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA., Landry ML; Departments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT, 06510, USA., Peaper DR; Departments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT, 06510, USA., Bilguvar K; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA.; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Gardner LM; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, 21218, MD, USA., Pitzer VE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., St George K; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Adams MD; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. nathan.grubaugh@yale.edu.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06510, USA. nathan.grubaugh@yale.edu.

المصدر: Communications biology [Commun Biol] 2022 May 11; Vol. 5 (1), pp. 439. Date of Electronic Publication: 2022 May 11.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.

بيانات الدورية: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , SARS-CoV-2*/genetics, Genomics ; Humans ; Pandemics ; United States/epidemiology

SCR Organism: SARS-CoV-2 variants

المؤلفون: Roberts SC; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA.; Department of Infection Prevention, Yale New Haven Health, New Haven, Connecticut, USA., Foppiano Palacios C; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Martinello RA; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA.; Department of Infection Prevention, Yale New Haven Health, New Haven, Connecticut, USA.; Department of Pediatrics, Yale School of Medicine, New Haven, Connecticut, USA., Smith C; Department of Infection Prevention, Yale New Haven Health, New Haven, Connecticut, USA., Davis MW; Department of Pharmacy Services, Yale New Haven Hospital, New Haven, Connecticut, USA., Mcmanus D; Department of Pharmacy Services, Yale New Haven Hospital, New Haven, Connecticut, USA., Tirmizi S; Department of Pharmacy Services, Yale New Haven Hospital, New Haven, Connecticut, USA., Topal JE; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA.; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA., Azar MM; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA., Malinis M; Section of Infectious Diseases, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA.

مؤلفون مشاركون: Yale SARS-CoV-2 Genomic Surveillance Initiative

المصدر: Transplant infectious disease : an official journal of the Transplantation Society [Transpl Infect Dis] 2022 Apr; Vol. 24 (2), pp. e13782. Date of Electronic Publication: 2022 Jan 25.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Munksgaard Country of Publication: Denmark NLM ID: 100883688 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1399-3062 (Electronic) Linking ISSN: 13982273 NLM ISO Abbreviation: Transpl Infect Dis Subsets: MEDLINE

مواضيع طبية MeSH: COVID-19*/epidemiology , COVID-19*/prevention & control , SARS-CoV-2*, Antibodies, Monoclonal, Humanized ; Antibodies, Neutralizing ; COVID-19 Vaccines ; Disease Outbreaks ; Humans ; Vaccination