المؤلفون: Pc, Babbitt, Pg, Bagos, Amos Bairoch, Bateman A, Chatonnet A, Mj, Chen, Dj, Craik, Rd, Finn, Gloriam D, Dh, Haft, Henrissat B, Gl, Holliday, Isberg V, Kaas Q, Landsman D, Lenfant N, Manning G, Nagano N, Srinivasan N, O’Donovan C, Kd, Pruitt, Sowdhamini R, Nd, Rawlings, Mh, Saier Jr, Jl, Sharman, Spedding M, Kd, Tsirigos, Vastermark A, Vriend G

المساهمون: Architecture et fonction des macromolécules biologiques (AFMB), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA)

المصدر: Database: The Journal of Biological Databases and Curation
Babbitt, P C, Bagos, P G, Bairoch, A, Bateman, A, Chatonnet, A, Chen, M J, Craik, D J, Finn, R D, Gloriam, D, Haft, D H, Henrissat, B, Holliday, G L, Isberg, V, Kaas, Q, Landsman, D, Lenfant, N, Manning, G, Nagano, N, Srinivasan, N, O'Donovan, C, Pruitt, K D, Sowdhamini, R, Rawlings, N D, Saier, M H, Sharman, J L, Spedding, M, Tsirigos, K D, Vastermark, A & Vriend, G 2015, ' Creating a specialist protein resource network : a meeting report for the protein bioinformatics and community resources retreat ', Database: The Journal of Biological Databases and Curation, vol. 2015, pp. bav063 . https://doi.org/10.1093/database/bav063
Europe PubMed Central
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2015, ⟨10.1093/database/bav063⟩
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2015, 2015 (Article ID bav063), pp.1-5. ⟨10.1093/database/bav063⟩
Database-The Journal of Biological Databases and Curation, 2015, pp. bav063
Babbitt, P C, Bagos, P G, Bairoch, A, Bateman, A, Chatonnet, A, Chen, M J, Craik, D J, Finn, R D, Gloriam, D, Haft, D H, Henrissat, B, Holliday, G L, Isberg, V, Kaas, Q, Landsman, D, Lenfant, N, Manning, G, Nagano, N, Srinivasan, N, O’Donovan, C, Pruitt, K D, Sowdhamini, R, Rawlings, N D, Saier, M H, Sharman, J L, Spedding, M, Tsirigos, K D, Vastermark, A & Vriend, G 2015, ' Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat ', Database: The Journal of Biological Databases and Curation, vol. 2015, pp. 1-5 . https://doi.org/10.1093/database/bav063
Database-The Journal of Biological Databases and Curation, 2015, bav063
Database, Vol. 2015 (2015) P. bav063
Database : the journal of biological databases and curation, vol 2015
Babbitt, PC; Bagos, PG; Bairoch, A; Bateman, A; Chatonnet, A; Chen, MJ; et al.(2015). Creating a specialist protein resource network: A meeting report for the protein bioinformatics and community resources retreat. Database, 2015. doi: 10.1093/database/bav063. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/8tv1v8k6

مصطلحات موضوعية: Meeting Report, Databases, Library and Information Studies, Underpinning research, Genetics, Humans, ddc:576, Aetiology, Databases, Protein, ComputingMilieux_MISCELLANEOUS, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], Nucleic Acid, Protein, Human Genome, Computational Biology, Proteins, Molecular Sequence Annotation, Congresses as Topic, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], 1.5 Resources and infrastructure (underpinning), Data Format, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM], Generic health relevance, Databases, Nucleic Acid, Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19], 2.6 Resources and infrastructure (aetiology)

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::6db9b5bfbc27d2445abda07e40fccda9
http://europepmc.org/articles/PMC4499208

المؤلفون: Robert Finn, Tk, Attwood, Pc, Babbitt, Bateman A, Bork P, Aj, Bridge, Hy, Chang, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Gl, Holliday, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H

المصدر: Europe PubMed Central

URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::0e098f6f2959d9ff1979c7eb4ec1dce6
http://europepmc.org/abstract/med/27899635

المؤلفون: Baas BJ, Medellin BP, LeVieux JA, Erwin K, Lancaster EB, Johnson WH Jr, Kaoud TS, Moreno RY, de Ruijter M, Babbitt PC, Zhang YJ, Whitman CP

المصدر: Biochemistry [Biochemistry] 2021 Jun 08; Vol. 60 (22), pp. 1776-1786. Date of Electronic Publication: 2021 May 21.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE

مواضيع طبية MeSH: Hydrolases/*chemistry , Isomerases/*chemistry, Amino Acid Sequence ; Binding Sites/physiology ; Catalysis ; Catalytic Domain/physiology ; Evolution, Molecular ; Kinetics ; Magnetic Resonance Spectroscopy/methods ; Models, Chemical

المؤلفون: Pinney MM; Department of Biochemistry, Stanford University, Stanford, CA 94305, USA. margauxp@stanford.edu herschla@stanford.edu., Mokhtari DA; Department of Biochemistry, Stanford University, Stanford, CA 94305, USA., Akiva E; Department of Bioengineering and Therapeutic Sciences and Quantitative Biosciences Institute, University of California, San Francisco, CA 94158, USA., Yabukarski F; Department of Biochemistry, Stanford University, Stanford, CA 94305, USA.; Chan Zuckerberg Biohub, San Francisco, CA 94110, USA., Sanchez DM; Department of Chemistry, Stanford University, Stanford, CA 94305, USA.; Department of Photon Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA., Liang R; Department of Chemistry, Stanford University, Stanford, CA 94305, USA.; Department of Photon Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA., Doukov T; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA., Martinez TJ; Department of Chemistry, Stanford University, Stanford, CA 94305, USA.; Department of Photon Sciences, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA., Babbitt PC; Department of Bioengineering and Therapeutic Sciences and Quantitative Biosciences Institute, University of California, San Francisco, CA 94158, USA., Herschlag D; Department of Biochemistry, Stanford University, Stanford, CA 94305, USA. margauxp@stanford.edu herschla@stanford.edu.; Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA.; Stanford ChEM-H, Stanford University, Stanford, CA 94305, USA.

المصدر: Science (New York, N.Y.) [Science] 2021 Mar 05; Vol. 371 (6533).

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

مواضيع طبية MeSH: Adaptation, Physiological* , Evolution, Molecular*, Bacterial Proteins/*chemistry , Steroid Isomerases/*chemistry, Amino Acid Substitution ; Bacterial Proteins/genetics ; Enzyme Stability ; Mutation ; Steroid Isomerases/genetics ; Temperature

المؤلفون: Medellin BP, Lancaster EB, Brown SD, Rakhade S, Babbitt PC, Whitman CP, Zhang YJ

المصدر: Biochemistry [Biochemistry] 2020 Apr 28; Vol. 59 (16), pp. 1592-1603. Date of Electronic Publication: 2020 Apr 13.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE

مواضيع طبية MeSH: Protein Structure, Quaternary*, Bacterial Proteins/*chemistry , Isomerases/*chemistry, Alcaligenaceae/enzymology ; Amino Acid Sequence ; Binding Sites ; Bordetella/enzymology ; Burkholderia/enzymology ; Burkholderiaceae/enzymology ; Computational Biology ; Kinetics ; Sequence Alignment

SCR Organism: Advenella mimigardefordensis; Bordetella trematum; Caballeronia arationis

المؤلفون: Holliday GL; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA.; Present Address: Medicines Discovery Catapult, Mereside, Alderley Park, Alderley Edge SK10 4TG, UK., Brown SD; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA., Mischel D; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA., Polacco BJ; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA., Babbitt PC; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA.; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA.; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, 1700 4th Street, CA 94143, USA.

المصدر: Database : the journal of biological databases and curation [Database (Oxford)] 2020 Jan 01; Vol. 2020.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Protein* , Enzymes*/chemistry , Enzymes*/classification , Enzymes*/physiology, Computational Biology/*methods, Molecular Sequence Annotation ; Structure-Activity Relationship

المؤلفون: Zhou N; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Jiang Y; Indiana University Bloomington, Bloomington, Indiana, USA., Bergquist TR; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA., Lee AJ; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA., Kacsoh BZ; Geisel School of Medicine at Dartmouth, Hanover, NH, USA.; Department of Molecular and Systems Biology, Hanover, NH, USA., Crocker AW; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Lewis KA; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Georghiou G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., Nguyen HN; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Computer Science, Ames, IA, USA., Hamid MN; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Davis L; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Dogan T; Department of Computer Engineering, Hacettepe University, Ankara, Turkey.; European Molecular Biolo gy Labora tory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK., Atalay V; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey., Rifaioglu AS; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey.; Department of Computer Engineering, Iskenderun Technical University, Hatay, Turkey., Dalkıran A; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey., Cetin Atalay R; CanSyL, Graduate School of Informatics, Middle East Technical University, Ankara, Turkey., Zhang C; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Hurto RL; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Freddolino PL; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Zhang Y; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Bhat P; Achira Labs, Bangalore, India., Supek F; Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain., Fernández JM; INB Coordination Unit, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Catalonia, Spain.; (former) INB GN2, Structural and Computational Biology Programme, Spanish National Cancer Research Centre, Barcelona, Catalonia, Spain., Gemovic B; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Perovic VR; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Davidović RS; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Sumonja N; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Veljkovic N; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Asgari E; Molecular Cell Biomechanics Laboratory, Departments of Bioengineering, University of California Berkeley, Berkeley, CA, USA.; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Berkeley, CA, USA., Mofrad MRK; Departments of Bioengineering and Mechanical Engineering, Berkeley, CA, USA., Profiti G; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.; National Research Council, IBIOM, Bologna, Italy., Savojardo C; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Martelli PL; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Casadio R; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Boecker F; University of Bonn: INRES Crop Bioinformatics, Bonn, North Rhine-Westphalia, Germany., Schoof H; INRES Crop Bioinformatics, University of Bonn, Bonn, Germany., Kahanda I; Gianforte School of Computing, Montana State University, Bozeman, Montana, USA., Thurlby N; University of Bristol, Computer Science, Bristol, Bristol, United Kingdom., McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Brunswick, Germany.; RESIST, DFG Cluster of Excellence 2155, Brunswick, Germany., Renaux A; Interuniversity Institute of Bioinformatics in Brussels, Université libre de Bruxelles - Vrije Universiteit Brussel, Brussels, Belgium.; Machine Learning Group, Université libre de Bruxelles, Brussels, Belgium.; Artificial Intelligence lab, Vrije Universiteit Brussel, Brussels, Belgium., Saidi R; European Molecular Biolo gy Labora tory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK., Gough J; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom., Freitas AA; University of Kent, School of Computing, Canterbury, United Kingdom., Antczak M; School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom., Fabris F; University of Kent, School of Computing, Canterbury, United Kingdom., Wass MN; School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom., Hou J; University of Missouri, Computer Science, Columbia, Missouri, USA.; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Cheng J; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Wang Z; University of Miami, Coral Gables, Florida, USA., Romero AE; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Paccanaro A; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Yang H; School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, Galway, Galway, Ireland.; Technical University of Munich, Garching, Germany., Goldberg T; Department of Informatics, Bioinformatics & Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Zhao C; Faculty for Informatics, Garching, Germany.; Department for Bioinformatics and Computational Biology, Garching, Germany.; School of Computing Sciences and Computer Engineering, Hattiesburg, Mississippi, USA., Holm L; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Törönen P; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Medlar AJ; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Zosa E; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Borukhov I; Compugen Ltd., Holon, Israel., Novikov I; Baylor College of Medicine, Department of Biochemistry and Molecular Biology, Houston, TX, USA., Wilkins A; Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA., Lichtarge O; Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA., Chi PH; National TsingHua University, Hsinchu, Taiwan., Tseng WC; Department of Electrical Engineering in National Tsing Hua University, Hsinchu City, Taiwan., Linial M; The Hebrew University of Jerusalem, Jerusalem, Israel., Rose PW; University of California San Diego, San Diego Supercomputer Center, La Jolla, California, USA., Dessimoz C; Department of Computational Biology and Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.; Department of Genetics, Evolution & Environment, and Department of Computer Science, University College London, London, UK.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Vidulin V; Department of Knowledge Technologies, Jozef Stefan Institute, Ljubljana, Slovenia., Dzeroski S; Jozef Stefan Institute, Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, Ljubljana, Slovenia., Sillitoe I; Research Department of Structural and Molecular Biology, University College London, London, England., Das S; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom., Lees JG; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom.; Department of Health and Life Sciences, Oxford Brookes University, London, UK., Jones DT; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom.; Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, United Kingdom., Wan C; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Cozzetto D; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Fa R; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Torres M; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Warwick Vesztrocy A; Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, United Kingdom.; SIB Swiss Institute of Bioinformatics, Lausanne, 1015, Switzerland., Rodriguez JM; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain., Tress ML; Spanish National Cancer Research Centre (CNIO), Madrid, Spain., Frasca M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Notaro M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Grossi G; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Petrini A; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Re M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Valentini G; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Mesiti M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy.; Institut de Biologie Computationnelle, LIRMM, CNRS-UMR 5506, Universite de Montpellier, Montpellier, France., Roche DB; Department of Informatics, Bioinformatics and Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Reeb J; Department of Informatics, Bioinformatics and Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Ritchie DW; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France., Aridhi S; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France., Alborzi SZ; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France.; Inria, Nancy, France., Devignes MD; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France.; University of Lorraine, Nancy, Lorraine, France.; Inria, Nancy, France., Koo DCE; Department of Biology, New York University, New York, NY, USA., Bonneau R; NYU Center for Data Science, New York, 10010, NY, USA.; Flatiron Institute, CCB, New York, 10010, NY, USA., Gligorijević V; Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, New York, New York, USA., Barot M; Center for Data Science, New York University, New York, 10011, NY, USA., Fang H; Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK., Toppo S; Department of Molecular Medicine, University of Padova, Padova, Italy., Lavezzo E; Department of Molecular Medicine, University of Padova, Padova, Italy., Falda M; Department of Biology, University of Padova, Padova, Italy., Berselli M; Department of Molecular Medicine, University of Padova, Padova, Italy., Tosatto SCE; CNR Institute of Neuroscience, Padova, Italy.; Department of Biomedical Sciences, University of Padua, Padova, Italy., Carraro M; Department of Biomedical Sciences, University of Padua, Padova, Italy., Piovesan D; Department of Biomedical Sciences, University of Padua, Padova, Italy., Ur Rehman H; Department of Computer Science, National University of Computer and Emerging Sciences, Peshawar, Khyber Pakhtoonkhwa, Pakistan., Mao Q; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA.; University of California, Riverside, Philadelphia, PA, USA., Zhang S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Vucetic S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Black GS; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Jo D; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Suh E; Department of Biology, Brigham Young University, Provo, UT, USA., Dayton JB; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Larsen DJ; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Omdahl AR; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., McGuffin LJ; School of Biological Sciences, University of Reading, Reading, England, United Kingdom., Brackenridge DA; School of Biological Sciences, University of Reading, Reading, England, United Kingdom., Babbitt PC; Department of Pharmaceutical Chemistry, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, 94158, CA, USA., Yunes JM; UC Berkeley - UCSF Graduate Program in Bioengineering, University of California, San Francisco, 94158, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, 94158, CA, USA., Fontana P; Research and Innovation Center, Edmund Mach Foundation, San Michele all'Adige, Italy., Zhang F; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai, Shanghai, China.; Department of Biostatistics and Computational Biology, School of Life Sciences, Fudan University, Shanghai, Shanghai, China., Zhu S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., You R; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Zhang Z; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Dai S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Yao S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China., Tian W; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Sciences, Fudan University, Shanghai, Shanghai, China.; Department of Pediatrics, Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA., Cao R; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Chandler C; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Amezola M; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Johnson D; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Chang JM; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Liao WH; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Liu YW; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Pascarelli S; Okinawa Institute of Science and Technology, Tancha, Okinawa, Japan., Frank Y; Tel Aviv University, Tel Aviv, Israel., Hoehndorf R; Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Jeddah, Saudi Arabia., Kulmanov M; Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Jeddah, Saudi Arabia., Boudellioua I; Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.; Computer, Electrical and Mathematical Sciences Engineering Division (CEMSE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia., Politano G; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Di Carlo S; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Benso A; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Hakala K; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland., Ginter F; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku, Turku, Finland., Mehryary F; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland., Kaewphan S; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland.; Turku Centre for Computer Science (TUCS), Turku, Finland., Björne J; Department of Future Technologies, Faculty of Science and Engineering, University of Turku, Turku, FI-20014, Finland.; Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, Turku, FI-20500, Finland., Moen H; University of Turku, Turku, Finland., Tolvanen MEE; Department of Future Technologies, University of Turku, Turku, Finland., Salakoski T; Department of Future Technologies, Faculty of Science and Engineering, University of Turku, Turku, FI-20014, Finland.; Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, Turku, FI-20500, Finland., Kihara D; Department of Biological Sciences, Department of Computer Science, Purdue University, 47907, IN, USA.; Department of Pediatrics, University of Cincinnati, Cincinnati, 45229, OH, USA., Jain A; Department of Computer Science, Purdue University, West Lafayette, IN, USA., Šmuc T; Division of Electronics, Rudjer Boskovic Institute, Zagreb, Croatia., Altenhoff A; Department of Computer Science, ETH Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Zurich, Switzerland., Ben-Hur A; Department of Computer Science, Colorado State University, Fort Collins, CO, USA., Rost B; Department of Informatics, Bioinformatics & Computational Biology-i12, Technische Universitat Munchen, Munich, Germany.; Institute for Food and Plant Sciences WZW, Technische Universität München, Freising, Germany., Brenner SE; University of California, Berkeley, CA, USA., Orengo CA; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom., Jeffery CJ; Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA., Bosco G; Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Hogan DA; Geisel School of Medicine at Dartmouth, Hanover, NH, USA.; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., O'Donovan C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., Mooney SD; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA., Greene CS; Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.; Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Philadelphia, Pennsylvania, USA., Radivojac P; Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA. predrag@northeastern.edu., Friedberg I; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA. idoerg@iastate.edu.

المصدر: Genome biology [Genome Biol] 2019 Nov 19; Vol. 20 (1), pp. 244. Date of Electronic Publication: 2019 Nov 19.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

مواضيع طبية MeSH: Molecular Sequence Annotation/*trends, Animals ; Biofilms ; Candida albicans/genetics ; Drosophila melanogaster/genetics ; Genome, Bacterial ; Genome, Fungal ; Humans ; Locomotion ; Memory, Long-Term ; Molecular Sequence Annotation/methods ; Pseudomonas aeruginosa/genetics

المؤلفون: Baas BJ, Medellin BP, LeVieux JA, de Ruijter M, Zhang YJ, Brown SD, Akiva E, Babbitt PC, Whitman CP

المصدر: Biochemistry [Biochemistry] 2019 Jun 04; Vol. 58 (22), pp. 2617-2627. Date of Electronic Publication: 2019 May 23.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE

مواضيع طبية MeSH: Bacterial Proteins/*chemistry , Isomerases/*chemistry, Amino Acid Sequence ; Bacterial Proteins/genetics ; Bacterial Proteins/isolation & purification ; Burkholderia/enzymology ; Catalytic Domain ; Fatty Acids, Unsaturated/chemistry ; Isomerases/genetics ; Isomerases/isolation & purification ; Kinetics ; Models, Chemical ; Mutation ; Protein Structure, Quaternary ; Pseudomonas putida/enzymology ; Sequence Alignment

SCR Organism: Burkholderia lata

المؤلفون: Yunes JM; UC Berkeley - UCSF Graduate Program in Bioengineering, University of California, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA., Babbitt PC; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.; Department of Pharmaceutical Chemistry, University of California, San Francisco, CA, USA.; Quantitative Biosciences Institute, University of California, San Francisco, CA, USA.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2019 Feb 01; Vol. 35 (3), pp. 442-451.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology* , Software*, Proteins/*chemistry, Gene Ontology

المؤلفون: Mitchell AL; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Attwood TK; School of Computer Science, The University of Manchester, Manchester M13 9PL, UK., Babbitt PC; Department of Bioengineering & Therapeutic Sciences, University of California, San Francisco, CA 94158, USA., Blum M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Bork P; European Molecular Biology Laboratory, Structural and Computational Biology Unit, Meyerhofstr.1, 69117 Heidelberg, Germany., Bridge A; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland., Brown SD; Department of Bioengineering & Therapeutic Sciences, University of California, San Francisco, CA 94158, USA., Chang HY; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., El-Gebali S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fraser MI; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Gough J; Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK., Haft DR; J. Craig Venter Institute (JCVI), 9605 Medical Center Drive, Suite 150, Rockville, MD 20850, USA., Huang H; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA., Letunic I; Biobyte Solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany., Lopez R; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Luciani A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Madeira F; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Marchler-Bauer A; National Center for Biotechnology Information, National Library of Medicine, NIH Bldg, 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA., Mi H; Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, CA 90033, USA., Natale DA; Protein Information Resource, Georgetown University Medical Center, Washington, DC, USA., Necci M; Department of Biomedical Sciences, University of Padua, via U. Bassi 58/b, 35131 Padua, Italy.; Department of Agricultural Sciences, University of Udine, via Palladio 8, 33100 Udine, Italy.; Fondazione Edmund Mach, Via E. Mach 1, 38010 S. Michele all'Adige, Italy., Nuka G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Orengo C; Structural and Molecular Biology, University College London, Darwin Building, London WC1E 6BT, UK., Pandurangan AP; Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK., Paysan-Lafosse T; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Pesseat S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Potter SC; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Qureshi MA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Rawlings ND; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Redaschi N; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland., Richardson LJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Rivoire C; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland., Salazar GA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Sangrador-Vegas A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Sigrist CJA; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland., Sillitoe I; Structural and Molecular Biology, University College London, Darwin Building, London WC1E 6BT, UK., Sutton GG; J. Craig Venter Institute (JCVI), 9605 Medical Center Drive, Suite 150, Rockville, MD 20850, USA., Thanki N; National Center for Biotechnology Information, National Library of Medicine, NIH Bldg, 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA., Thomas PD; Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, CA 90033, USA., Tosatto SCE; Department of Biomedical Sciences, University of Padua, via U. Bassi 58/b, 35131 Padua, Italy., Yong SY; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

المصدر: Nucleic acids research [Nucleic Acids Res] 2019 Jan 08; Vol. 47 (D1), pp. D351-D360.

نوع المنشور: Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Protein* , Molecular Sequence Annotation*, Animals ; Databases, Genetic ; Gene Ontology ; Humans ; Internet ; Multigene Family ; Protein Domains/genetics ; Sequence Homology, Amino Acid ; Software ; User-Computer Interface