المؤلفون: Makova, Kateryna D.^{Aff1, IDs41586024074732_cor1}, Pickett, Brandon D., Harris, Robert S., Hartley, Gabrielle A., Cechova, Monika, Pal, Karol, Nurk, Sergey, Yoo, DongAhn, Li, Qiuhui, Hebbar, Prajna, McGrath, Barbara C., Antonacci, Francesca, Aubel, Margaux, Biddanda, Arjun, Borchers, Matthew, Bornberg-Bauer, Erich^{Aff8, Aff10}, Bouffard, Gerard G., Brooks, Shelise Y., Carbone, Lucia^{Aff11, Aff12}, Carrel, Laura, Carroll, Andrew, Chang, Pi-Chuan, Chin, Chen-Shan, Cook, Daniel E., Craig, Sarah J. C., de Gennaro, Luciana, Diekhans, Mark, Dutra, Amalia, Garcia, Gage H., Grady, Patrick G. S., Green, Richard E., Haddad, Diana, Hallast, Pille, Harvey, William T., Hickey, Glenn, Hillis, David A., Hoyt, Savannah J., Jeong, Hyeonsoo, Kamali, Kaivan, Pond, Sergei L. Kosakovsky, LaPolice, Troy M., Lee, Charles, Lewis, Alexandra P., Loh, Yong-Hwee E., Masterson, Patrick, McGarvey, Kelly M., McCoy, Rajiv C., Medvedev, Paul, Miga, Karen H., Munson, Katherine M., Pak, Evgenia, Paten, Benedict, Pinto, Brendan J., Potapova, Tamara, Rhie, Arang, Rocha, Joana L., Ryabov, Fedor, Ryder, Oliver A., Sacco, Samuel, Shafin, Kishwar, Shepelev, Valery A., Slon, Viviane, Solar, Steven J., Storer, Jessica M., Sudmant, Peter H., Sweetalana, Sweeten, Alex^{Aff2, Aff6}, Tassia, Michael G., Thibaud-Nissen, Françoise, Ventura, Mario, Wilson, Melissa A., Young, Alice C., Zeng, Huiqing, Zhang, Xinru, Szpiech, Zachary A., Huber, Christian D., Gerton, Jennifer L., Yi, Soojin V., Schatz, Michael C., Alexandrov, Ivan A., Koren, Sergey, O’Neill, Rachel J., Eichler, Evan E.^{Aff5, Aff26, IDs41586024074732_cor83}, Phillippy, Adam M.^{Aff2, IDs41586024074732_cor84}

المصدر: Nature: International weekly journal of science. 630(8016):401-411

المؤلفون: Joyce, Collin, Murrell, Sasha, Murrell, Ben, Omorodion, Oluwarotimi, Ver, Lorena S, Carrico, Nancy, Bastidas, Raiza, Nedellec, Rebecca, Bick, Michael, Woehl, Jordan, Zhao, Fangzhu, Burns, Alison, Barman, Shawn, Appel, Michael, Ramos, Alejandra, Wickramasinghe, Lalinda, Eren, Kemal, Vollbrecht, Thomas, Smith, Davey M, Pond, Sergei L Kosakovsky, McBride, Ryan, Worth, Charli, Batista, Facundo, Sok, Devin, Network, The IAVI Protocol C Investigators The IAVI African HIV Research, Poignard, Pascal, Briney, Bryan, Wilson, Ian A, Landais, Elise, Burton, Dennis R

المصدر: PLOS Pathogens. 19(6)

مصطلحات موضوعية: Medical Microbiology, Biomedical and Clinical Sciences, Immunology, HIV/AIDS, Biotechnology, Vaccine Related, Infectious Diseases, Vaccine Related (AIDS), Prevention, Immunization, Infection, Good Health and Well Being, Humans, Broadly Neutralizing Antibodies, HIV Antibodies, HIV Infections, Epitopes, Dermatitis, HIV-1, IAVI Protocol C Investigators & The IAVI African HIV Research Network, Microbiology, Virology, Medical microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/2fj1q3vb

المؤلفون: Benndorf, Rainer, Velazquez, Ryan, Zehr, Jordan D, Pond, Sergei L Kosakovsky, Martin, Jody L, Lucaci, Alexander G

المصدر: Cell Stress and Chaperones. 27(4)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Evolutionary Biology, Biotechnology, Genetics, 2.1 Biological and endogenous factors, Aetiology, Generic health relevance, Animals, Heat-Shock Proteins, Heat-Shock Proteins, Small, Humans, Molecular Chaperones, Mutation, Vertebrates, alpha-Crystallin B Chain, alpha-Crystallins, Purifying selection, Neuropathy, Myopathy, Disease-associated missense mutation, Genetic dominance, Genotype-phenotype relationship, Alpha B-crystallin, Genetic dominance, Neuropathy,  Myopathy, Biochemistry and Cell Biology, Biochemistry & Molecular Biology, Biochemistry and cell biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3rs7d3t4

المؤلفون: Martin, Darren P, Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D, Wilkinson, Eduan, Lucaci, Alexander G, Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J, NGS-SA, UK, COVID-19 Genomics, Gupta, Ravindra K, Wertheim, Joel O, Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W, Lemey, Philippe, MacLean, Oscar A, Robertson, David L, de Oliveira, Tulio, Pond, Sergei L Kosakovsky

المصدر: Cell. 184(20)

مصطلحات موضوعية: Biological Sciences, Evolutionary Biology, Prevention, Vaccine Related, Emerging Infectious Diseases, Infectious Diseases, Pneumonia, Biodefense, Lung, Infection, Good Health and Well Being, Amino Acid Sequence, COVID-19, Codon, Evolution, Molecular, Genes, Viral, Genetic Drift, Host Adaptation, Humans, Immune Evasion, Mutation, Pandemics, Phylogeny, Public Health, SARS-CoV-2, NGS-SA, COVID-19 Genomics UK, COVID 19, convergent mutations, directional selection, diversifying selection, evolutionary adaptation, immune evasion, lineage-defining mutations, positive selection, recurrent mutations, transmission advantage, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/01802609

المؤلفون: Fischer, Will, Giorgi, Elena E, Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A, Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T, Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Africa, Network for Genomic Surveillance in South, Wilkinson, Eduan, Msomi, Nokukhanya, Iranzadeh, Arash, Fonseca, Vagner, Doolabh, Deelan, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J, Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Marvin, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Pond, Sergei L Kosakovsky, Weaver, Steven, Giovanetti, Marta, Alcantara, Luiz Carlos Junior, Martin, Darren, Bhiman, Jinal N, Williamson, Carolyn, Gnanakaran, Sandrasegaram, Korber, Bette

المصدر: Cell Host & Microbe. 29(7)

مصطلحات موضوعية: Medical Microbiology, Biomedical and Clinical Sciences, Biological Sciences, Pneumonia, Vaccine Related, Emerging Infectious Diseases, Prevention, Genetics, Lung, HIV/AIDS, Infectious Diseases, Infection, Good Health and Well Being, COVID-19, Evolution, Molecular, Genome, Viral, HIV-1, Humans, Immune Evasion, Mutation, Pandemics, Receptors, Virus, Recombination, Genetic, SARS-CoV-2, Selection, Genetic, Spike Glycoprotein, Coronavirus, Viral Proteins, Network for Genomic Surveillance in South Africa, evolution, glycosylation, immune escape, insertions and deletions, recombination, Microbiology, Immunology, Biochemistry and cell biology, Medical microbiology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/3df1z0j3

المؤلفون: Rahman, Shakibur, Pond, Sergei L. Kosakovsky, Webb, Andrew, Hey, Jody

المصدر: Proceedings of the National Academy of Sciences of the United States of America, 2021 May . 118(20), 1-8.

URL الوصول: https://www.jstor.org/stable/27040424

المؤلفون: Wertheim, Joel O, Murrell, Ben, Mehta, Sanjay R, Forgione, Lisa A, Pond, Sergei L Kosakovsky, Smith, Davey M, Torian, Lucia V

المصدر: The Journal of Infectious Diseases. 218(12)

مصطلحات موضوعية: Biomedical and Clinical Sciences, Public Health, Health Sciences, HIV/AIDS, 2.2 Factors relating to the physical environment, Aetiology, Infection, Good Health and Well Being, Adolescent, Adult, Cluster Analysis, Female, HIV Infections, HIV-1, Humans, Male, Middle Aged, Molecular Epidemiology, New York City, Population Surveillance, Sensitivity and Specificity, Young Adult, HIV, surveillance, molecular epidemiology, transmission network, cluster, genetic distance, dynamics, LASSO, machine learning, Biological Sciences, Medical and Health Sciences, Microbiology, Biological sciences, Biomedical and clinical sciences, Health sciences

URL الوصول: https://escholarship.org/uc/item/4mz0s2zt

المؤلفون: Pond, Sergei L Kosakovsky, Weaver, Steven, Brown, Andrew J Leigh, Wertheim, Joel O

المصدر: Molecular Biology and Evolution. 35(7)

مصطلحات موضوعية: Biological Sciences, Bioinformatics and Computational Biology, Infectious Diseases, HIV/AIDS, Genetics, Infection, Good Health and Well Being, Computational Biology, HIV Infections, HIV-1, Humans, Molecular Epidemiology, Software, molecular epidemiology, HIV, network, transmission cluster, surveillance, Biochemistry and Cell Biology, Evolutionary Biology, Biochemistry and cell biology, Evolutionary biology

وصف الملف: application/pdf

URL الوصول: https://escholarship.org/uc/item/65d9s9mx

المؤلفون: Landais, Elise, Murrell, Ben, Briney, Bryan, Murrell, Sasha, Rantalainen, Kimmo, Berndsen, Zachary T, Ramos, Alejandra, Wickramasinghe, Lalinda, Smith, Melissa Laird, Eren, Kemal, de Val, Natalia, Wu, Mengyu, Cappelletti, Audrey, Umotoy, Jeffrey, Lie, Yolanda, Wrin, Terri, Algate, Paul, Chan-Hui, Po-Ying, Karita, Etienne, Investigators, The IAVI Protocol C, Network, The IAVI African HIV Research, Ward, Andrew B, Wilson, Ian A, Burton, Dennis R, Smith, Davey, Pond, Sergei L Kosakovsky, Poignard, Pascal

المصدر: Immunity. 47(5)

مصطلحات موضوعية: Vaccine Related (AIDS), Prevention, HIV/AIDS, Biotechnology, Vaccine Related, Immunization, Good Health and Well Being, AIDS Vaccines, Antibodies, Neutralizing, Cell Lineage, Complementarity Determining Regions, HIV Antibodies, Humans, env Gene Products, Human Immunodeficiency Virus, IAVI Protocol C Investigators, IAVI African HIV Research Network, Immunology

URL الوصول: https://escholarship.org/uc/item/8ph388qv

المؤلفون: Wagner, Gabriel A, Landais, Elise, Caballero, Gemma, Phung, Pham, Pond, Sergei L Kosakovsky, Poignard, Pascal, Richman, Douglas D, Little, Susan J, Smith, Davey M

المصدر: Journal of Virology. 91(17)

مصطلحات موضوعية: Medical Microbiology, Biomedical and Clinical Sciences, Immunology, Vaccine Related, HIV/AIDS, Infectious Diseases, Clinical Research, Immunization, Aetiology, 2.1 Biological and endogenous factors, Infection, Good Health and Well Being, Adult, Antibodies, Neutralizing, California, Case-Control Studies, HIV Antibodies, HIV Envelope Protein gp120, HIV Infections, HIV-1, Humans, Immunoglobulin G, Male, Neutralization Tests, Superinfection, Young Adult, neutralizing antibody, deep sequencing, HIV dual infection, HIV superinfection, vaccine, neutralizing antibodies, Biological Sciences, Agricultural and Veterinary Sciences, Medical and Health Sciences, Virology, Agricultural, veterinary and food sciences, Biological sciences, Biomedical and clinical sciences

URL الوصول: https://escholarship.org/uc/item/5381g158