المؤلفون: Pardo-Palacios, Francisco J., Wang, Dingjie^{Aff2, Aff3}, Reese, Fairlie^{Aff4, Aff5}, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite^{Aff10, Aff11}, Adams, Matthew S., Balderrama-Gutierrez, Gabriela^{Aff4, Aff5}, Behera, Amit K., Gonzalez Martinez, Jose M., Hunt, Toby, Lagarde, Julien^{Aff7, Aff14}, Liang, Cindy E., Li, Haoran^{Aff2, Aff3}, Meade, Marcus Jerryd, Moraga Amador, David A., Prjibelski, Andrey D.^{Aff17, Aff18}, Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Çelik, Muhammed Hasan^{Aff4, Aff5}, Chen, Ying, Du, Mei R. M., Felton, Colette, Göke, Jonathan^{Aff21, Aff23}, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Li, Jian-Liang, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Nip, Ka Ming, Pertea, Mihaela^{Aff27, Aff28}, Ritchie, Matthew E.^{Aff22, Aff29}, Sim, Andre D., Tang, Alison D., Wan, Yuk Kei^{Aff21, Aff30}, Wang, Changqing, Wong, Brandon Y.^{Aff27, Aff28}, Yang, Chen, Barnes, If, Berry, Andrew E., Capella-Gutierrez, Salvador, Cousineau, Alyssa, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Götz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Ren, Xingjie, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Smith, Melissa Laird, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid A., Carninci, Piero^{Aff40, Aff42}, Denslow, Nancy D.^{Aff10, Aff43}, Guigó, Roderic^{Aff7, Aff44}, Hunter, Margaret E., Maehr, Rene, Shen, Yin, Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher^{Aff13, IDs41592024022983_cor81}, Frankish, Adam^{Aff9, IDs41592024022983_cor82}, Au, Kin Fai^{Aff2, Aff3, IDs41592024022983_cor83}, Sheynkman, Gloria M.^{Aff15, Aff48, Aff49, IDs41592024022983_cor84}, Mortazavi, Ali^{Aff4, Aff5, IDs41592024022983_cor85}, Conesa, Ana^{Aff1, Aff50, IDs41592024022983_cor86}, Brooks, Angela N.^{Aff6, Aff13, IDs41592024022983_cor87}

المصدر: Nature Methods: Techniques for life scientists and chemists. 21(7):1349-1363

المؤلفون: Nevers, Yannis, Jones, Tamsin, Jyothi, Dushyanth, Yates, Bethan, Ferret, Meritxell, Portell-Silva, Laura, Codo, Laia, Cosentino, Salvatore, Marcet-Houben, Marina, Vlasova, Anna, Poidevin, Laetitia, Kress, Arnaud, Hickman, Mark, Persson, Emma, Piližota, Ivana, Guijarro-Clarke, Cristina, Altenhoff, Adrian, Bruford, Elspeth, Dessimoz, Christophe, Ebersberger, Ingo, Emms, David, Gabaldón, Toni, Glover, Natasha, Hu, Yanhui, Iwasaki, Wataru, Lecompte, Odile, Linard, Benjamin, Martin, Maria, Roos, David, Sonhammer, Erik, Thomas, Paul, Thybert, David, Vandepoele, Klaas, Capella-Gutierrez, Salvador, Codó, Laia, Gonzalez-Uriarte, Asier, Garrayo-Ventas, Javier, Repchevsky, Dmitry, Sundesha, Vicky, Sonnhammer, Erik

المساهمون: Université de Lausanne = University of Lausanne (UNIL), Laboratoire des sciences de l'ingénieur, de l'informatique et de l'imagerie (ICube), École Nationale du Génie de l'Eau et de l'Environnement de Strasbourg (ENGEES)-Université de Strasbourg (UNISTRA)-Institut National des Sciences Appliquées - Strasbourg (INSA Strasbourg), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Les Hôpitaux Universitaires de Strasbourg (HUS)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et Nanosciences Grand-Est (MNGE), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Méthodes et Algorithmes pour la Bioinformatique (MAB), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), European Molecular Biology Laboratory (EMBL) (core funds to D.J. and M.J.M.), National Institutes of Health [U24HG007822 to D.J. and M.J.M., 75N93019C00077 to D.S.R.], National Human Genome Research Institute (NHGRI) [U24HG003345 to T.E.M.J, B.Y., E.A.B.], JSPS KAKENHI [16H06279, 19H05688 to W.I.], JST CREST [JPMJCR19S2 to W.I.], MEXT [JPMXD1521474594 to W.I.], Horizon 2020 [676559 to S.C.-G., 637765] (to D.M.E.), ELIXIR (to S.C.-G.), Wellcome Grant [208349/Z/17/Z to E.A.B.], National Science Foundation (USA) [1917302 to P.D.T.], Wellcome Trust [WT-218288, WT-212929 to D.S.R.], Service and Infrastructure grant from the Swiss Institute of Bioinformatics, Swiss National Science Foundation [186397, 205085 to C.D.]. Funding for open access charge: Swiss National Science Foundation [205085].

المصدر: Nucleic Acids Research
Nucleic Acids Research, 2022, 50 (W1), pp.W623-W632. ⟨10.1093/nar/gkac330⟩

مصطلحات موضوعية: [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]

URL الوصول: https://explore.openaire.eu/search/publication?articleId=od_______165::c0ef7edea95c1e5e3d95e611576fc0c6
https://hal.science/hal-04102295/file/gkac330.pdf

المؤلفون: Modic, Jolanda, Capella-Gutiérrez, Salvador, Canosa, Alejandro, Repchevsky, Dmitry, Haziza, Frederic, Ariosa, Roberto, Fernández, José María, Codó, Laia, Trajbarič, Mihael, Štepec, Dejan, Faura, Alvaro Garcia

مصطلحات موضوعية: Metadata, Standards, Data Models, Data Catalogue

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e936f8ef70667406437466d029cc28c7

المؤلفون: Capella-Gutierrez, Salvador, Canosa, Alejandro, De La Calle, Elena, Codo, Laia, Repchevsky, Dmitry, Fernández, José María, Valencia, Alfonso, Modic, Jolanda, Černivec, Aleš

مصطلحات موضوعية: Metadata, Standards, Data Catalogue, Data models

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18e312203aa7a17666f938c235e62cf2

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المؤلفون: Repchevsky, Dmitry, Naro, Daniel, Royo, Romina, Llorente Viejo, Silvia, Delgado Mercè, Jaime, Gelpi, Josep Lluis

المساهمون: Universitat Politècnica de Catalunya. Departament d'Arquitectura de Computadors, Universitat Politècnica de Catalunya. IMP - Information Modeling and Processing

المصدر: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname

مصطلحات موضوعية: Dades -- Compressió (Informàtica), Data compression (Computer science), Informàtica::Sistemes d'informació::Emmagatzematge i recuperació de la informació [Àrees temàtiques de la UPC], Compression, Genomics, MPEG-G

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::affe83c09fe41236405c225c0df473d9
https://hdl.handle.net/2117/168998

المؤلفون: Capella-Gutierrez, Salvador, de la Iglesia, Diana, Haas, Juergen, Lourenco, Analia, Fernandez, José M., Repchevsky, Dmitry, Dessimoz, Christophe, Schwede, Torsten, Notredame, Cedric, Gelpí, Josep Lluís, Valencia, Alfonso

المساهمون: Barcelona Supercomputing Center

المصدر: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Recercat. Dipósit de la Recerca de Catalunya
instname

مصطلحات موضوعية: Benchmarking, OpenEBench, Enginyeria biomèdica [Àrees temàtiques de la UPC], Computational Biology, Biologia computacional, Computational biology and bioinformatics

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d974dcf7bbad94ee1a790e0553b63416
http://hdl.handle.net/2117/107279

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المؤلفون: Pardo-Palacios FJ; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; These authors contributed equally to this work., Wang D; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Reese F; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Carbonell-Sala S; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; These authors contributed equally to this work., Williams B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.; These authors contributed equally to this work., Loveland JE; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., De María M; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Adams MS; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Balderrama-Gutierrez G; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA.; These authors contributed equally to this work., Behera AK; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Gonzalez JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Hunt T; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.; These authors contributed equally to this work., Lagarde J; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Flomics Biotech, Dr Aiguader 88, Barcelona 08003, Spain.; These authors contributed equally to this work., Liang CE; Molecular Cell and Developmental Biology, University of California, Santa Cruz, Santa Cruz, USA.; These authors contributed equally to this work., Li H; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA.; These authors contributed equally to this work., Jerryd Meade M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; These authors contributed equally to this work., Moraga Amador DA; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA.; These authors contributed equally to this work., Prjibelski AD; Department of Computer Science, University of Helsinki, Helsinki, Finland.; Center for Bioinformatics and Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.; These authors contributed equally to this work., Birol I; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Bostan H; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Brooks AM; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Hasan Çelik M; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Chen Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Du MRM; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Felton C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Göke J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Department of Statistics and Data Science, National University of Singapore, Singapore, Singapore., Hafezqorani S; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Herwig R; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan., Lee J; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Liang Li J; Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, Durham, USA., Lienhard M; Department Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Berlin, Germany., Mikheenko A; Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK., Mulligan D; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Ming Nip K; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Pertea M; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Ritchie ME; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Australia., Sim AD; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore., Tang AD; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Kei Wan Y; Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore., Wang C; Walter and Eliza Hall Institute of Medical Research, Parkville, Australia., Wong BY; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA.; Center for Computational Biology, Johns Hopkins University, Baltimore, USA., Yang C; Canada's Michael Smith Genome Sciences Centre, BC Cancer, Vancouver, Canada., Barnes I; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Berry A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Capella S; Barcelona Supercomputing Cente, Barcelona, Spain., Dhillon N; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Fernandez-Gonzalez JM; Barcelona Supercomputing Cente, Barcelona, Spain., Ferrández-Peral L; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Garcia-Reyero N; Environmental Laboratory, US Army Engineer Research & Development Center, Vicksburg, USA., Goetz S; Biobam Bioinformatics SL, Valencia, Spain., Hernández-Ferrer C; Barcelona Supercomputing Cente, Barcelona, Spain., Kondratova L; Genetics Institute, University of Florida, Gainesville, USA., Liu T; Cardiff University, Cardiff, UK., Martinez-Martin A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Menor C; Biobam Bioinformatics SL, Valencia, Spain., Mestre-Tomás J; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Mudge JM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Panayotova NG; Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, USA., Paniagua A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain., Repchevsky D; Barcelona Supercomputing Cente, Barcelona, Spain., Rouchka E; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Saint-John B; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Sapena E; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK, UK., Sheynkman L; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA., Laird Smith M; Department of Biochemistry & Molecular Genetics, University of Louisville, Louisville, USA., Suner MM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Takahashi H; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan., Youngworth IA; Department of Genetics, Stanford University, Palo Alto, USA., Carninci P; Center for Integrative Medical Sciences, Laboratory for Transcriptome Technology, RIKEN, Yokohama, Japan.; Human Technopole, Milano, Italy., Denslow ND; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, USA.; Center for Environmental and Human Toxicology, Department of Physiological Sciences,, University of Florida, Gainesville, USA., Guigó R; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Catalonia, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Catalonia, Spain., Hunter ME; U.S. Geological Survey, Wetland and Aquatic Research Center, Gainesville, USA., Tilgner HU; Brain and Mind Research Institute and Center for Neurogenetics, Weill Cornell Medicine, New York City, USA., Wold BJ; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA., Vollmers C; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA., Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fai Au K; Department of Biomedical Informatics, The Ohio State University, Columbus, USA.; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, USA., Sheynkman GM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, USA.; Center for Public Health Genomics.; UVA Cancer Center, University of Virginia, Charlottesville, USA., Mortazavi A; Developmental and Cell Biology, University of California, Irvine, Irvine, USA.; Center for Complex Biological Systems, University of California, Irvine, Irvine, USA., Conesa A; Institute for Integrative Systems Biology, Spanish National Research Council (CSIC), Paterna, Spain.; Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, USA., Brooks AN; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, USA.; Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, USA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 27. Date of Electronic Publication: 2023 Jul 27.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE