المؤلفون: Moran JC; Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA.; University of Miami Medical Scientist Training Program, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA., Brivanlou A; Department of Microbiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA., Brischigliaro M; Department of Neurology, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA., Fontanesi F; Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA., Rouskin S; Department of Microbiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA., Barrientos A; Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA.; Department of Neurology, University of Miami Miller School of Medicine, 1600 NW 10th Avenue, Miami, FL 33136, USA.; The Miami Veterans Affairs (VA) Medical System, 1201 NW 16th Street, Miami, FL 33125, USA.

المصدر: Science (New York, N.Y.) [Science] 2024 Jul 19; Vol. 385 (6706), pp. eadm9238. Date of Electronic Publication: 2024 Jul 19.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

مواضيع طبية MeSH: Gene Expression Regulation* , Mitochondrial Proteins*/genetics , Mitochondrial Proteins*/metabolism , Neoplasm Proteins*/genetics , Neoplasm Proteins*/metabolism , RNA Folding* , RNA, Messenger*/chemistry , RNA, Messenger*/genetics , RNA, Mitochondrial*/chemistry , RNA, Mitochondrial*/genetics , Genome, Mitochondrial*, Humans ; Mitochondria/genetics ; Mitochondria/metabolism ; Mutation ; Protein Biosynthesis/genetics ; HEK293 Cells ; High-Throughput Nucleotide Sequencing

المؤلفون: Moafinejad SN; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., de Aquino BRH; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Boniecki MJ; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Pandaranadar Jeyeram IPN; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Nikolaev G; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Magnus M; Department of Molecular and Cellular Biology, Harvard University, 52 Oxford St, Cambridge, MA 02138, USA., Farsani MA; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Badepally NG; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Wirecki TK; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Stefaniak F; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland., Bujnicki JM; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

المصدر: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W368-W373.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: RNA Folding* , Software* , RNA*/chemistry , Internet* , Nucleic Acid Conformation* , Models, Molecular*, Monte Carlo Method

المؤلفون: Hien EDM; Department of Biology, Faculty of Science, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada., Chauvier A; Department of Biology, Faculty of Science, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada., St-Pierre P; Department of Biology, Faculty of Science, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada., Lafontaine DA; Department of Biology, Faculty of Science, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada.

المصدر: Biochemistry [Biochemistry] 2024 Jul 02; Vol. 63 (13), pp. 1608-1620. Date of Electronic Publication: 2024 Jun 12.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE

مواضيع طبية MeSH: Riboswitch*/genetics , Thiamine Pyrophosphate*/metabolism , Thiamine Pyrophosphate*/chemistry , Escherichia coli*/genetics , Escherichia coli*/metabolism , RNA Folding* , Nucleic Acid Conformation*, Transcription, Genetic ; RNA, Bacterial/chemistry ; RNA, Bacterial/metabolism ; RNA, Bacterial/genetics ; Escherichia coli Proteins/metabolism ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/chemistry ; Gene Expression Regulation, Bacterial ; Bacterial Proteins

المؤلفون: Huang H; Department of Computer Science and Engineering, CUHK, Hong Kong SAR, 999077, China.; School of Computer Science and Engineering, Beihang University, Beijing, 100191, China., Lin Z; Department of Computer Science and Engineering, CUHK, Hong Kong SAR, 999077, China.; School of Artificial Intelligence, Nanjing University, Nanjing, 210023, China., He D; Department of Computer Science and Engineering, CUHK, Hong Kong SAR, 999077, China., Hong L; Department of Computer Science and Engineering, CUHK, Hong Kong SAR, 999077, China., Li Y; Department of Computer Science and Engineering, CUHK, Hong Kong SAR, 999077, China.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2024 Jun 28; Vol. 40 (Supplement_1), pp. i347-i356.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: RNA*/chemistry , Nucleic Acid Conformation* , RNA Folding*, Computational Biology/methods ; Algorithms ; Software ; Neural Networks, Computer ; Sequence Analysis, RNA/methods

المؤلفون: Dubovichenko MV; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia., Batsa M; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia., Bobkov GA; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia., Vlasov GS; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia., El-Deeb AA; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia., Kolpashchikov DM; Laboratory of Frontier Nucleic Acid Technologies in Gene Therapy of Cancer, SCAMT Institute, ITMO University, Saint-Petersburg, 191002, Russia.; Chemistry Department, University of Central Florida, Orlando, FL 32816, USA.; Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32816, USA.; National Center for Forensic Science, University of Central Florida, Orlando, FL, 32816, USA.

المصدر: Nucleic acids research [Nucleic Acids Res] 2024 Jun 10; Vol. 52 (10), pp. 5866-5879.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: DNA, Catalytic*/chemistry , DNA, Catalytic*/metabolism , RNA*/chemistry , RNA*/metabolism , RNA Cleavage* , RNA Folding*, Nucleic Acid Conformation ; DNA/chemistry ; DNA/metabolism ; Ribonuclease H/metabolism ; Binding Sites ; Substrate Specificity

المؤلفون: Jin L; Department of Physics and Institute of Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA., Zhang S; Department of Physics and Institute of Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA., Song Z; Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA., Heng X; Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA., Chen SJ; Department of Physics and Institute of Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA.; Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA.

المصدر: Nucleic acids research [Nucleic Acids Res] 2024 Jun 10; Vol. 52 (10), pp. 6066-6078.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: HIV-1*/genetics , RNA, Viral*/metabolism , RNA, Viral*/chemistry , RNA, Viral*/genetics , RNA Folding* , Transcription, Genetic* , HIV Long Terminal Repeat*/genetics, Kinetics ; Nucleic Acid Conformation ; Humans ; 5' Untranslated Regions ; Gene Expression Regulation, Viral ; Magnetic Resonance Spectroscopy

المؤلفون: Mukherjee S; Cancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health (NIH), Bethesda, MD, USA; Department of Computer Science, Ben-Gurion University, Beer-Sheva, Israel. Electronic address: mukherjee.sumit89@gmail.com., Barash D; Department of Computer Science, Ben-Gurion University, Beer-Sheva, Israel.

المصدر: Trends in biotechnology [Trends Biotechnol] 2024 May; Vol. 42 (5), pp. 517-521. Date of Electronic Publication: 2023 Dec 01.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Review

بيانات الدورية: Publisher: Elsevier Science Publishers Country of Publication: England NLM ID: 8310903 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-3096 (Electronic) Linking ISSN: 01677799 NLM ISO Abbreviation: Trends Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Synthetic Biology*/methods , RNA*/genetics , RNA*/chemistry , RNA*/metabolism , RNA Folding*

المؤلفون: Niemyska W; Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland; Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Banacha 2, 02-097 Warsaw, Poland. Electronic address: wanda@mimuw.edu.pl., Mukherjee S; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Trojdena 4, 02-109 Warsaw, Poland., Gren BA; Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland., Niewieczerzal S; Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland., Bujnicki JM; Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Trojdena 4, 02-109 Warsaw, Poland. Electronic address: janusz@iimcb.gov.pl., Sulkowska JI; Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland. Electronic address: jsulkowska@cent.uw.edu.pl.

المصدر: Journal of molecular biology [J Mol Biol] 2024 Mar 15; Vol. 436 (6), pp. 168455. Date of Electronic Publication: 2024 Jan 23.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

مواضيع طبية MeSH: RNA*/chemistry , RNA*/genetics , RNA Folding*, Molecular Dynamics Simulation

المؤلفون: Beckmann IK; Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, 1090 Wien, Austria.; Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical University of Vienna, A-1030 Vienna, Austria., Waldl M; Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, 1090 Wien, Austria.; Vienna Doctoral School in Chemistry (DoSChem), University of Vienna, 1090 Vienna, Austria.; Center for Anatomy and Cell Biology, Medical University of Vienna, 1090 Vienna, Austria., Will S; LIX - Batiment Turing, Ecole Polytechnique, 91120 Palaiseau, France., Hofacker IL; Department of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, 1090 Wien, Austria ivo@tbi.univie.ac.at.; Faculty of Computer Science, Research Group Bioinformatics and Computational Biology, University of Vienna, 1090 Vienna, Austria.

المصدر: RNA (New York, N.Y.) [RNA] 2024 Jan 16; Vol. 30 (2), pp. 113-123. Date of Electronic Publication: 2024 Jan 16.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9509184 Publication Model: Electronic Cited Medium: Internet ISSN: 1469-9001 (Electronic) Linking ISSN: 13558382 NLM ISO Abbreviation: RNA Subsets: MEDLINE

مواضيع طبية MeSH: RNA*/chemistry , RNA Folding*, Nucleic Acid Conformation ; Feasibility Studies ; Software

المؤلفون: Ugrina M; Institute of Physics, University of Augsburg, Universitätsstraße 1, 86159 Augsburg, Germany.; Department of Theoretical Biophysics, Max-Planck-Institute of Biophysics, Max-von-Laue-Straße 3, 60438 Frankfurt am Main, Germany., Burkhart I; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany., Müller D; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany., Schwalbe H; Institute for Organic Chemistry and Chemical Biology, Center for Biomolecular Magnetic Resonance (BMRZ), Goethe University Frankfurt am Main, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany., Schwierz N; Institute of Physics, University of Augsburg, Universitätsstraße 1, 86159 Augsburg, Germany.

المصدر: Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. 87-100.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: G-Quadruplexes* , RNA Folding*, Entropy ; Molecular Dynamics Simulation ; Nucleic Acid Conformation ; RNA/chemistry