نتائج البحث - "Santeri Puranen"

المساهمون: Helsinki Institute for Information Technology, Department of Mathematics and Statistics, Jukka Corander / Principal Investigator, Biostatistics Helsinki, University Medical Center Utrecht, Helsinki Institute for Information Technology (HIIT), Centre of Excellence in Computational Inference, COIN, University of Helsinki, Department of Computer Science, Aalto-yliopisto, Aalto University

المصدر: bioRxiv

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2f59142340e0d46b39512a4338d7bf6
http://hdl.handle.net/10138/324985

7

Genome-wide epistasis and co-selection study using mutual information

المؤلفون: Brian J. Arnold, Santeri Puranen, Nicholas J. Croucher, Simon R. Harris, John A. Lees, Stephen D. Bentley, Juri Kuronen, Yingying Xu, Jukka Corander, Johan Pensar, Neil MacAlasdair, Julian Parkhill, Aleksi Sipola, Claire Chewapreecha, Gerry Tonkin-Hill, Leonor Sánchez-Busó, Maiju Pesonen

المساهمون: University of Helsinki, Department of Computer Science, Harvard University, University of Oslo, New York University, University of Cambridge, Imperial College London, Aalto-yliopisto, Aalto University, Department of Mathematics and Statistics, Helsinki Institute for Information Technology, Jukka Corander / Principal Investigator, Tonkin-Hill, Gerry [0000-0003-4397-2224], Parkhill, Julian [0000-0002-7069-5958], Apollo - University of Cambridge Repository

المصدر: Nucleic Acids Research

وصف الملف: application/pdf; application/zip

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92ef9cac3da083547ab506b81f839603
https://doi.org/10.1093/nar/gkz656

8

Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium

المؤلفون: Sergio Arredondo-Alonso, Malbert R. C. Rogers, Rob J. L. Willems, Johan Pensar, Jukka Corander, Janetta Top, Johanna C. Braat, Samuel Kaski, Santeri Puranen, W. van Schaik, Alan McNally, Anita C. Schürch, Maiju Pesonen, Pekka Marttinen

المساهمون: Utrecht University, University of Birmingham, Professorship Kaski Samuel, Centre of Excellence in Computational Inference, COIN, University of Helsinki, Department of Computer Science, Aalto-yliopisto, Aalto University, Helsinki Institute for Information Technology, Department of Mathematics and Statistics, Jukka Corander / Principal Investigator, Biostatistics Helsinki

المصدر: Arredondo-Alonso, S, Top, J, McNally, A, Puranen, S, Pesonen, M, Pensar, J, Marttinen, P, Braat, J C, Rogers, M R C, van Schaik, W, Kaski, S, Willems, R J L, Corander, J & Schürch, A C 2020, ' Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium ', mBio, vol. 11, no. 1, e03284-19 . https://doi.org/10.1128/mBio.03284-19
mBio, 11(1). American Society for Microbiology
mBio, Vol 11, Iss 1 (2020)
mBio
mBio, Vol 11, Iss 1, p e03284-19 (2020)

مصطلحات موضوعية: Enterococcus faecium, DIVERSITY, ABORTIVE INFECTION SYSTEM, Plasmid, PHYLOGENETIC ANALYSIS, R PACKAGE, Non-U.S. Gov't, Phylogeny, Genetics, 0303 health sciences, Cross Infection, Research Support, Non-U.S. Gov't, Genomics, Hospitals, QR1-502, 3. Good health, Anti-Bacterial Agents, GENOME, Horizontal gene transfer, 1181 Ecology, evolutionary biology, Plasmidome, VANCOMYCIN TOLERANCE, Source specificity, Research Article, Plasmids, Gene Transfer, Horizontal, Sequence analysis, Ecological and Evolutionary Science, Biology, Research Support, Microbiology, 03 medical and health sciences, Antibiotic resistance, Extrachromosomal DNA, Virology, Machine learning, Journal Article, Humans, Long-read sequencing, Gram-Positive Bacterial Infections, 030304 developmental biology, BILE-SALT HYDROLASE, Whole Genome Sequencing, 030306 microbiology, Sequence Analysis, DNA, biochemical phenomena, metabolism, and nutrition, biology.organism_classification, Editor's Pick, EVOLUTION, FAECALIS, DNA Transposable Elements, Nosocomial pathogen, Niche adaptation, RESISTANCE, Genome, Bacterial

وصف الملف: text/plain; image/pdf; application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1ec26e79c8c490a535f9307e5ead8f2
https://hdl.handle.net/1874/395124

9

High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

المؤلفون: Yingying Xu, Yoshiyuki Kabashima, Maiju Pesonen, Jukka Corander, Santeri Puranen, Johan Pensar

مصطلحات موضوعية: Statistics and Probability, FOS: Computer and information sciences, Computer Science - Machine Learning, Theoretical computer science, Computer science, Boltzmann machine, Machine Learning (stat.ML), 01 natural sciences, Statistics - Computation, Machine Learning (cs.LG), 010104 statistics & probability, 03 medical and health sciences, symbols.namesake, Statistics - Machine Learning, 0101 mathematics, Computation (stat.CO), 030304 developmental biology, 0303 health sciences, Parallelizable manifold, Markov chain, Applied Mathematics, Mutual information, Function (mathematics), Computational Mathematics, Computational Theory and Mathematics, symbols, Pairwise comparison, Likelihood function, Gibbs sampling

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6d00b970a71ca9c522b9d6028fcae21
http://hdl.handle.net/10852/84113

View record from ScienceDirect

10

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

المؤلفون: Stephen D. Bentley, Maiju Pesonen, James M. Musser, Marcin J. Skwark, Paul Turner, Santeri Puranen, Claire Chewapreecha, Julian Parkhill, Nicholas J. Croucher, Stephen B. Beres, Erik Aurell, Yingying Xu, Simon R. Harris, Jukka Corander

المساهمون: Medical Research Council (MRC), Skwark, Marcin J [0000-0002-2022-6766], Croucher, Nicholas J [0000-0001-6303-8768], Puranen, Santeri [0000-0001-6388-7110], Chewapreecha, Claire [0000-0002-1313-4011], Xu, Ying Ying [0000-0002-9096-0552], Turner, Paul [0000-0002-1013-7815], Harris, Simon R [0000-0003-1512-6194], Beres, Stephen B [0000-0003-3041-0185], Parkhill, Julian [0000-0002-7069-5958], Apollo - University of Cambridge Repository, Vanderbilt University, Imperial College London, Department of Computer Science, University of Cambridge, University of Oxford, Wellcome Trust Sanger Institute, Houston Methodist Hospital, Cornell University, Department of Applied Physics, Aalto-yliopisto, Aalto University, Department of Mathematics and Statistics, Jukka Corander / Principal Investigator, Biostatistics Helsinki

المصدر: PLoS Genetics
PLoS Genetics, Vol 13, Iss 2, p e1006508 (2017)

مصطلحات موضوعية: Heredity, Gene Identification and Analysis, STREPTOCOCCUS-PNEUMONIAE, Pathology and Laboratory Medicine, 0302 clinical medicine, 112 Statistics and probability, 1183 Plant biology, microbiology, virology, Genetics & Heredity, education.field_of_study, 1184 Genetics, developmental biology, physiology, PENICILLIN RESISTANCE, Nucleotide Mapping, ASSOCIATION, Genomics, Aminoacyltransferases, Bacterial Pathogens, DIRECT-COUPLING ANALYSIS, Fitness Epistasis, Medical Microbiology, Perspective, Network Analysis, Genotype, Bioinformatics, Locus (genetics), Microbial Genomics, Microbial Sensitivity Tests, beta-Lactams, Microbiology, beta-Lactam Resistance, 03 medical and health sciences, Bacterial Proteins, Genome-Wide Association Studies, Genetics, Bacterial Genetics, Humans, Penicillin-Binding Proteins, CONTACT PREDICTION, education, Molecular Biology Techniques, Microbial Pathogens, Molecular Biology, Ecology, Evolution, Behavior and Systematics, ta113, 0604 Genetics, Science & Technology, Bacteria, Gene Mapping, Organisms, Computational Biology, Biology and Life Sciences, Epistasis, Genetic, Split-Decomposition Method, Yeast, 030104 developmental biology, Genetics, Population, Genetic Loci, Mutation, Peptidyl Transferases, Epistasis, Structural Genomics, 030217 neurology & neurosurgery, Developmental Biology, 0301 basic medicine, Cancer Research, Linkage disequilibrium, Genetic Networks, Genome, Database and Informatics Methods, Medicine and Health Sciences, Gene Regulatory Networks, Genetics (clinical), Bacterial Genomics, Microbial Genetics, Pneumococcus, Anti-Bacterial Agents, Deletion Mutation, Streptococcus pneumoniae, Group A streptococci, Pathogens, Sequence Analysis, Life Sciences & Biomedicine, Research Article, Computer and Information Sciences, Multiple Alignment Calculation, lcsh:QH426-470, PROTEINS, Streptococcus pyogenes, Population, Epistasis and functional genomics, Computational biology, Biology, Research and Analysis Methods, Polymorphism, Single Nucleotide, Computational Techniques, Selection, Genetic, Gene, COEVOLUTION, Fungi, Streptococcus, Human Genetics, Bacteriology, Genome Analysis, EVOLUTION, lcsh:Genetics, RESIDUE CONTACTS, STATISTICAL-METHODS, Sequence Alignment, Genome, Bacterial, Genome-Wide Association Study

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::037923af2b850ac978a8309e61ed99cf

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