المؤلفون: Marco Di Salvo, Simone Puccio, Clelia Peano, Stephan Lacour, Pietro Alifano

المصدر: BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)

مصطلحات موضوعية: RhoTermPredict, Rho-dependent terminators, RUT site, Motif, Transcription termination, Rho, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-019-2704-x; https://doaj.org/toc/1471-2105

URL الوصول: https://doaj.org/article/e5074a4a59b54a8294449450f88caae0

المؤلفون: Pietro Alifano, Simone Puccio, Stephan Lacour, Marco Di Salvo, Clelia Peano

المساهمون: Dipartimento di Scienze e Technologie Biologiche ed Ambientali [Lecce], Università del Salento [Lecce], Humanitas Clinical and Research Center [Rozzano, Milan, Italy], Istituto di Tecnologie Biomediche [Segrate] (ITB), Consiglio Nazionale delle Ricerche [Roma] (CNR), Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, Laboratoire Interdisciplinaire de Physique [Saint Martin d’Hères] (LIPhy), Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes, Di Salvo, Marco, Puccio, Simone, Peano, Clelia, Lacour, Stephan, Alifano, Pietro

المصدر: BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2019, 20 (1), pp.1-11. ⟨10.1186/s12859-019-2704-x⟩
BMC Bioinformatics, 2019, 20 (1), pp.1-11. ⟨10.1186/s12859-019-2704-x⟩
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)

مصطلحات موضوعية: RhoTermPredict, Bacillus subtilis, Biochemistry, Genome, chemistry.chemical_compound, 0302 clinical medicine, Structural Biology, Transcription (biology), RNA polymerase, Databases, Genetic, lcsh:QH301-705.5, ComputingMilieux_MISCELLANEOUS, Terminator Regions, Genetic, 0303 health sciences, biology, Applied Mathematics, Salmonella enterica, Computer Science Applications1707 Computer Vision and Pattern Recognition, Computer Science Applications, RNA, Bacterial, 030220 oncology & carcinogenesis, Rho-dependent terminator, lcsh:R858-859.7, DNA microarray, Algorithm, Algorithms, Bacterial genome size, lcsh:Computer applications to medicine. Medical informatics, RUT site, Rho-dependent terminators, 03 medical and health sciences, Rho, Escherichia coli, Molecular Biology, 030304 developmental biology, Base Sequence, Escherichia coli K12, Sequence Analysis, RNA, Transcription termination, Computational genomics, RNA, biology.organism_classification, Rho Factor, lcsh:Biology (General), chemistry, Motif, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Genome, Bacterial, Software

وصف الملف: ELETTRONICO

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1fef025f1fbaf2e3fccf66f98a0e296
https://hal.inria.fr/hal-02423208

المؤلفون: Simon Leonard, Stephan Lacour, Sam Meyer, William Nasser, Sylvie Reverchon, Florence Hommais

المساهمون: Microbiologie, adaptation et pathogénie (MAP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), Chromatine et Régulation de la Pathogénie bactérienne (CRP), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes

المصدر: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2019, 47 (15), pp.1-12. ⟨10.1093/nar/gkz485⟩
Nucleic Acids Research, 2019, 47 (15), pp.1-12. ⟨10.1093/nar/gkz485⟩

مصطلحات موضوعية: Untranslated region, Datasets as Topic, RNA-Seq, Computational biology, Genome, 03 medical and health sciences, Intergenic region, Enterobacteriaceae, Genetics, Escherichia coli, RNA, Antisense, RNA, Messenger, 030304 developmental biology, 0303 health sciences, Internet, biology, Sequence Analysis, RNA, 030302 biochemistry & molecular biology, RNA, Robustness (evolution), High-Throughput Nucleotide Sequencing, Salmonella enterica, biology.organism_classification, Dickeya dadantii, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], RNA, Bacterial, Transfer RNA, RNA, Small Untranslated, Methods Online, Algorithms, Genome, Bacterial, Software

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::99ff54b528788ffa21dcd87744b75e5f
https://hal.archives-ouvertes.fr/hal-02152104/file/APERO.pdf

المؤلفون: Thomas Egli, Paolo Landini, Stephan Lacour, Johannes Wolf

المصدر: Environmental Microbiology Reports. 6:1-13

مصطلحات موضوعية: Genetics, Regulation of gene expression, Biology, Agricultural and Biological Sciences (miscellaneous), chemistry.chemical_compound, Regulon, chemistry, Sigma factor, Transcription (biology), RNA polymerase, Gene, rpoS, Ecology, Evolution, Behavior and Systematics, DNA

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::6f3420c597a5f804ed8fd0b836e36ac5
https://doi.org/10.1111/1758-2229.12112

المؤلفون: Olivier Leroy, Paolo Landini, Stephan Lacour, Annie Kolb

المصدر: Journal of Biological Chemistry. 279:55255-55261

مصطلحات موضوعية: Threonine, Transcription, Genetic, Glutamine, Genetic Vectors, Mutant, Glutamic Acid, Sigma Factor, Biology, Settore BIO/19 - Microbiologia Generale, Binding, Competitive, Biochemistry, chemistry.chemical_compound, Potassium Permanganate, Sigma factor, Transcription (biology), RNA polymerase, Deoxyribonuclease I, Promoter Regions, Genetic, Molecular Biology, Alanine, Dose-Response Relationship, Drug, Heparin, Escherichia coli Proteins, Wild type, DNA, DNA-Directed RNA Polymerases, Cell Biology, Molecular biology, chemistry, Mutation, Plasmids, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1003e66183e2d9f9849b86517f99b57
https://doi.org/10.1074/jbc.m410855200

المؤلفون: Stephan Lacour, Paolo Landini

المصدر: Journal of Bacteriology. 186:7186-7195

مصطلحات موضوعية: Regulation of gene expression, Mutant, Promoter, Biology, Microbiology, Molecular biology, chemistry.chemical_compound, chemistry, RNA polymerase, Gene expression, Consensus sequence, Molecular Biology, Gene, rpoS

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::97236f5557a1f58ac562e277ddf1f13b
https://doi.org/10.1128/jb.186.21.7186-7195.2004

المؤلفون: Annie Kolb, Paolo Landini, Alexander Jakob Boris Zehnder, Stephan Lacour

المصدر: Biochemical and Biophysical Research Communications. 292:922-930

مصطلحات موضوعية: Transcription, Genetic, Macromolecular Substances, Molecular Sequence Data, Response element, Nuclease Protection Assays, Biophysics, Sigma Factor, RNA polymerase II, Biology, Biochemistry, Abortive initiation, Bacterial Proteins, Sigma factor, Escherichia coli, Promoter Regions, Genetic, Molecular Biology, Base Sequence, General transcription factor, Heparin, Escherichia coli Proteins, Promoter, DNA-Directed RNA Polymerases, Cell Biology, Molecular biology, Mutagenesis, Site-Directed, biology.protein, Transcription factor II F, Transcription factor II D, Protein Binding

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::730a0af3d7bdab256eba45616dbe1f7f
https://doi.org/10.1006/bbrc.2002.6744

المؤلفون: Stephan Lacour, Omaya Dudin, Hiroshi Ogasawara, Akira Ishihama, Johannes Geiselmann

المساهمون: Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF), Research Center for Human and Environmental Sciences, Shinsyu University, Department of Frontier Bioscience and Research Center for Micro-Nano Technology, Hosei University [Chiyoda], Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes, Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS), Hosei University

المصدر: Journal of Bacteriology
Journal of Bacteriology, American Society for Microbiology, 2014, 196 (3), ⟨10.1128/JB.00938-13⟩
Journal of Bacteriology, 2014, 196 (3), ⟨10.1128/JB.00938-13⟩

مصطلحات موضوعية: Regulator, Motility, Sigma Factor, Biology, Microbiology, Bacterial Proteins, Sigma factor, Transcription (biology), Cyclic AMP, Escherichia coli, Molecular Biology, Psychological repression, Transcription factor, Genetics, Escherichia coli Proteins, Promoter, Gene Expression Regulation, Bacterial, Articles, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Cell biology, Flagella, Biofilms, Trans-Activators, bacteria, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], rpoS

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f565e6a2be1ad7f04329efb8507707d
https://hal.inria.fr/hal-00926632

المؤلفون: Paolo, Landini, Thomas, Egli, Johannes, Wolf, Stephan, Lacour

المصدر: Environmental microbiology reports. 6(1)

مصطلحات موضوعية: Bacterial Proteins, Stress, Physiological, Escherichia coli, Sigma Factor, Gene Expression Regulation, Bacterial, Promoter Regions, Genetic, Ecosystem

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::ab976c3a58d5a374f9f3beeb4b2e1e67
https://pubmed.ncbi.nlm.nih.gov/24596257

المؤلفون: Omaya Dudin, Johannes Geiselmann, Stephan Lacour

المساهمون: Modeling, simulation, measurement, and control of bacterial regulatory networks (IBIS), Laboratoire Adaptation et pathogénie des micro-organismes [Grenoble] (LAPM), Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Inria Grenoble - Rhône-Alpes, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut Jean Roget, Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Inria Grenoble - Rhône-Alpes, Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)

المصدر: Research in Microbiology
Research in Microbiology, Elsevier, 2013, 164 (8), pp.838-847. ⟨10.1016/j.resmic.2013.07.002⟩
Research in Microbiology, 2013, 164 (8), pp.838-847. ⟨10.1016/j.resmic.2013.07.002⟩

مصطلحات موضوعية: Green Fluorescent Proteins, Sigma Factor, Biology, Microbiology, 03 medical and health sciences, chemistry.chemical_compound, Bacterial Proteins, Genes, Reporter, Transcription (biology), Sigma factor, RNA polymerase, Gene expression, Escherichia coli, Enhancer, Molecular Biology, 030304 developmental biology, Regulation of gene expression, 0303 health sciences, 030306 microbiology, Escherichia coli Proteins, Gene Expression Profiling, fungi, food and beverages, Promoter, General Medicine, biochemical phenomena, metabolism, and nutrition, equipment and supplies, Molecular biology, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Artificial Gene Fusion, chemistry, bacteria, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], rpoS

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7bc1dd265063edff683d71e83b486ca
https://hal.inria.fr/hal-00857366